Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

4624546 .. 4626375

Gene Structure 1830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G002560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGTGGCTTAACCCACAGAAATGCATCTTCGGGGTCGAGGCAGGAAGGTTTCTCGGGTATATCATTAGCCACAGGGGAATTGAGGCCAATCCAGAGAAGGTGCAGGCTATATTAGACATGGTATCCCCAACCTACCGGAACGAGCACGTCGAGATGATAGCCTGGACAGCGGAGCACGAAGCTGCTTTCCTTGGCTTGAAGTCGTACTTGTCAGAGGTACCTCTACTCTACAAACCTGTTCCCGGGGAAATGCTCTACATATATCTGGCGGCATCGTCAACTGCCGTGAGTTCAGTCCTGATTAGGAAGGACTCCGATTGCGAGTACCCAGTGTACTACGCTAGAAAAGGTTACACTGGTGCAGAATCCAAGTACCCGGACATTGAAAAAGTAGCACTGGCTCTCCTAGTATCAGCCCGGAAGCTCAGACATTACTTCCAAGCACATTCTATCACCGTTTTCACTAATCACCCATTGAGGCTGGTTTTGCAGAAACCAGAGACATCGGGCAGGTTAATTAAATGGGCCATCGAGCTTGGGGAGTTCGATATCAAGTACCAGCCCCGGACAGCCATCAAAGCATCCAACAAGAAAACCAGCGGAGCCGGCATCCTGCTAATTAGCCCGGACGATCAAGTCTATGAGTACGCCCTCAAATTTGCCTTCAAGGCATCCAACAATGCCGCAGAATACGAGGCACTCATAGCAGGTTTGCAGATCGCCCGGGAACTAGGGATCCAACACCTTAGTATCTTCAGTGATTCTCAATTGGTCGTAAACCAGGTCAGCGGTAACTTCGAGGCAAAGGAGCCCCACATGTTCACCTCCTACATTTTTACCCAAATACCGAGGGCAGAAAACGACAAGGCAGATGCCCTTGCTAAGCTCGCATCAACTTCTCCAAACCCTACCTATGGGGCCACTAAAGTCGAAATTCTCACGGGACCCAGCACTTCCAAAACGGTGGCAGAAGTATTTTCGGTGGATCACACAGCTTCATGGATGGACCCAATTGTGAAATATATGGTCGACGGCCTAGCACCGGATGATAAAGTCGAGGCCAGAAGACTACAGCTAAGGTCAGCTCGATACACGATCATGAATGGCAAACTGTACAGAAGAGGGCATTGCTTTCCCAACCTAAAGTGTGTGACACCGGAGGAAGGTCACAAAATAATGAAGGACATTCACGCTGGTGTATGTGGTAACCATGCCGGAGCCCGGTCTCTTGCACACAAGACCCTAAGGGCAGGATATTTCTGGCCAATCATGTCGGCCCTGGCTCAAACAATATCCAGTTCTTGCCACAAATGCCAAATGTATGCAAATATCCCTAGGGCACCGCCCATCGCCCTTTCCATCCTCCTTGCACCATGGCCGTTCTGTCAGTGGGGTTTGGACTTGATTGGTAAACTTCCCACGGCAGTGGGACAGTTCAAATACGCCATTGTTGCCGTGGACTACCAAACAAAGTGGGTAGAGGCAGAACCTCTCATCGCCATCACCACGGAAAAGGTCAAAAGCTTCCTATGGAAGAACATCTACTGCAGGTTTGGAGTCCCGATACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

523

Amino Acids

58.36

Weight (kDa)

8.93

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	55 - 153	3e-18	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	84 - 182	4.9e-18	RNase H-like domain found in reverse transcriptase
RVT_3	PF13456	195 - 295	7.9e-14	Reverse transcriptase-like
Integrase_H2C2	PF17921	386 - 441	5.9e-07	Integrase zinc binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	635
Acc36I	ACCTGC	3 cut(s)	501, 698, 1539
Acc65I	GGTACC	1 cut(s)	217
AccB1I	GGYRCC	2 cut(s)	217, 1339
AccI	GTMKAC	1 cut(s)	1029
AciI	CCGC	6 cut(s)	170, 269, 600, 684, 789, 1343
AclWI	GGATC	3 cut(s)	730, 743, 993
AcoI	YGGCCR	2 cut(s)	1262, 1376
AcsI	RAATTY	2 cut(s)	656, 933
AcuI	CTGAAG	1 cut(s)	739
AfaI	GTAC	8 cut(s)	206, 219, 326, 335, 374, 557, 647, 1115
AfiI	CCNNNNNNNGG	5 cut(s)	242, 914, 1042, 1163, 1221
AflIII	ACRYGT	1 cut(s)	816
AgsI	TTSAA	4 cut(s)	199, 386, 667, 1438
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	3 cut(s)	161, 780, 1278
AleI	CACNNNNGTG	2 cut(s)	1194, 1424
AloI	GAACNNNNNNTCC	2 cut(s)	720, 752
AluBI	AGCT	8 cut(s)	182, 424, 535, 886, 995, 1075, 1085, 1524
AluI	AGCT	8 cut(s)	182, 424, 535, 886, 995, 1075, 1085, 1524
Alw21I	GWGCWC	2 cut(s)	147, 177
Alw26I	GTCTC	2 cut(s)	494, 1230
AlwI	GGATC	3 cut(s)	730, 743, 993
Ama87I	CYCGRG	3 cut(s)	53, 242, 723
AoxI	GGCC	8 cut(s)	84, 525, 918, 1033, 1059, 1262, 1275, 1376
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	2 cut(s)	656, 933
Asp718I	GGTACC	1 cut(s)	217
AspA2I	CCTAGG	1 cut(s)	1334
AspS9I	GGNCC	5 cut(s)	525, 918, 944, 1006, 1276
AsuC2I	CCSGG	9 cut(s)	243, 244, 377, 418, 565, 626, 724, 725, 1222
AsuHPI	GGTGA	4 cut(s)	445, 461, 814, 1495
AvaI	CYCGRG	3 cut(s)	53, 242, 723
AvaII	GGWCC	2 cut(s)	944, 1006
AvrII	CCTAGG	1 cut(s)	1334
AxyI	CCTNAGG	1 cut(s)	1244
BaeGI	GKGCMC	1 cut(s)	1342
BaeI	ACNNNNGTAYC	2 cut(s)	733, 766
BalI	TGGCCA	1 cut(s)	1264
BamHI	GGATCC	1 cut(s)	735
BanI	GGYRCC	2 cut(s)	217, 1339
BanII	GRGCYC	2 cut(s)	813, 1222
BarI	GAAGNNNNNNTAC	2 cut(s)	1526, 1558
BbsI	GAAGAC	1 cut(s)	1072
Bbv12I	GWGCWC	2 cut(s)	147, 177
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	6 cut(s)	536, 581, 997, 1355, 1367, 1508
BceAI	ACGGC	5 cut(s)	269, 1048, 1363, 1437, 1439
BciT130I	CCWGG	3 cut(s)	163, 782, 1280
BciVI	GTATCC	1 cut(s)	133
BcnI	CCSGG	9 cut(s)	243, 244, 377, 418, 565, 626, 724, 725, 1222
BcoDI	GTCTC	2 cut(s)	494, 1230
BfaI	CTAG	5 cut(s)	342, 407, 731, 1037, 1335
BfmI	CTRYAG	2 cut(s)	1070, 1546
BfuAI	ACCTGC	3 cut(s)	501, 698, 1539
BfuI	GTATCC	1 cut(s)	133
BglI	GCCNNNNNGGC	1 cut(s)	668
BisI	GCNGC	3 cut(s)	183, 270, 684
BlnI	CCTAGG	1 cut(s)	1334
BlpI	GCTNAGC	1 cut(s)	882
BlsI	GCNGC	3 cut(s)	184, 271, 685
Bme18I	GGWCC	2 cut(s)	944, 1006
BmeT110I	CYCGRG	3 cut(s)	53, 242, 723
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	5 cut(s)	525, 918, 944, 1006, 1276
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	7 cut(s)	33, 281, 590, 618, 680, 862, 899
BmuI	ACTGGG	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	1072
Bpu10I	CCTNAGC	1 cut(s)	1076
Bpu1102I	GCTNAGC	1 cut(s)	882
BpuMI	CCSGG	9 cut(s)	243, 244, 377, 418, 565, 626, 724, 725, 1222
BsaI	GGTCTC	1 cut(s)	1230
BsaWI	WCCGGW	3 cut(s)	135, 1042, 1156
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	5 cut(s)	242, 914, 1042, 1163, 1221
Bse118I	RCCGGY	1 cut(s)	605
Bse1I	ACTGG	4 cut(s)	329, 361, 402, 1296
Bse21I	CCTNAGG	1 cut(s)	1244
Bse3DI	GCAATG	1 cut(s)	1126
BseBI	CCWGG	3 cut(s)	163, 782, 1280
BseGI	GGATG	6 cut(s)	581, 609, 671, 1008, 1051, 1359
BseLI	CCNNNNNNNGG	5 cut(s)	242, 914, 1042, 1163, 1221
BseMI	GCAATG	1 cut(s)	1126
BseMII	CTCAG	1 cut(s)	439
BseNI	ACTGG	4 cut(s)	329, 361, 402, 1296
BseSI	GKGCMC	1 cut(s)	1342
BseXI	GCAGC	1 cut(s)	169
BseYI	CCCAGC	1 cut(s)	947
BsgI	GTGCAG	2 cut(s)	122, 381
BshFI	GGCC	8 cut(s)	86, 527, 920, 1035, 1061, 1264, 1277, 1378
BshNI	GGYRCC	2 cut(s)	217, 1339
BsiHKAI	GWGCWC	2 cut(s)	147, 177
BsiHKCI	CYCGRG	3 cut(s)	53, 242, 723
BslFI	GGGAC	3 cut(s)	957, 1443, 1544
BslI	CCNNNNNNNGG	5 cut(s)	242, 914, 1042, 1163, 1221
BsmAI	GTCTC	2 cut(s)	494, 1230
BsmFI	GGGAC	3 cut(s)	957, 1443, 1544
BsnI	GGCC	8 cut(s)	86, 527, 920, 1035, 1061, 1264, 1277, 1378
Bso31I	GGTCTC	1 cut(s)	1230
BsoBI	CYCGRG	3 cut(s)	53, 242, 723
Bsp1286I	GDGCHC	5 cut(s)	147, 177, 813, 1222, 1342
Bsp1407I	TGTACA	1 cut(s)	1113
Bsp143I	GATC	5 cut(s)	631, 717, 735, 985, 1095
Bsp1720I	GCTNAGC	1 cut(s)	882
Bsp19I	CCATGG	1 cut(s)	1373
BspACI	CCGC	6 cut(s)	170, 269, 600, 684, 789, 1343
BspANI	GGCC	8 cut(s)	86, 527, 920, 1035, 1061, 1264, 1277, 1378
BspCNI	CTCAG	1 cut(s)	438
BspHI	TCATGA	1 cut(s)	1098
BspMAI	CTGCAG	1 cut(s)	1550
BspMI	ACCTGC	3 cut(s)	501, 698, 1539
BspPI	GGATC	3 cut(s)	730, 743, 993
BspT107I	GGYRCC	2 cut(s)	217, 1339
BspTNI	GGTCTC	1 cut(s)	1230
BsrDI	GCAATG	1 cut(s)	1126
BsrFI	RCCGGY	1 cut(s)	605
BsrGI	TGTACA	1 cut(s)	1113
BsrI	ACTGG	4 cut(s)	329, 361, 402, 1296
BssAI	RCCGGY	1 cut(s)	605
BssMI	GATC	5 cut(s)	631, 717, 735, 985, 1095
BssT1I	CCWWGG	3 cut(s)	190, 1334, 1373
Bst2UI	CCWGG	3 cut(s)	163, 782, 1280
Bst4CI	ACNGT	4 cut(s)	457, 964, 1113, 1434
Bst6I	CTCTTC	1 cut(s)	1114
BstAUI	TGTACA	1 cut(s)	1113
BstC8I	GCNNGC	3 cut(s)	105, 607, 888
BstDEI	CTNAG	5 cut(s)	425, 746, 882, 1076, 1244
BstDSI	CCRYGG	4 cut(s)	1373, 1419, 1455, 1506
BstEII	GGTNACC	1 cut(s)	1205
BstF5I	GGATG	6 cut(s)	581, 609, 671, 1008, 1051, 1359
BstKTI	GATC	5 cut(s)	634, 720, 738, 988, 1098
BstMAI	GTCTC	2 cut(s)	494, 1230
BstMBI	GATC	5 cut(s)	631, 717, 735, 985, 1095
BstMWI	GCNNNNNNNGC	9 cut(s)	167, 487, 578, 606, 668, 704, 887, 1311, 1451
BstNI	CCWGG	3 cut(s)	163, 782, 1280
BstNSI	RCATGY	1 cut(s)	820
BstPI	GGTNACC	1 cut(s)	1205
BstSFI	CTRYAG	2 cut(s)	1070, 1546
BstSLI	GKGCMC	1 cut(s)	1342
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	1072
BstX2I	RGATCY	1 cut(s)	735
BstXI	CCANNNNNNTGG	2 cut(s)	964, 1426
BstYI	RGATCY	1 cut(s)	735
Bsu36I	CCTNAGG	1 cut(s)	1244
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	8 cut(s)	86, 527, 920, 1035, 1061, 1264, 1277, 1378
BtgI	CCRYGG	4 cut(s)	1373, 1419, 1455, 1506
BtgZI	GCGATG	2 cut(s)	1333, 1480
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	6 cut(s)	581, 609, 671, 1008, 1051, 1359
BtsI	GCAGTG	1 cut(s)	1431
BtsIMutI	CAGTG	6 cut(s)	336, 354, 395, 763, 1394, 1431
BveI	ACCTGC	3 cut(s)	501, 698, 1539
Cac8I	GCNNGC	3 cut(s)	105, 607, 888
CciI	TCATGA	1 cut(s)	1098
Cfr10I	RCCGGY	1 cut(s)	605
Cfr13I	GGNCC	5 cut(s)	525, 918, 944, 1006, 1276
Cfr9I	CCCGGG	2 cut(s)	242, 723
CsiI	ACCWGGT	1 cut(s)	780
Csp6I	GTAC	8 cut(s)	205, 218, 325, 334, 373, 556, 646, 1114
CspCI	CAANNNNNGTGG	2 cut(s)	1454, 1489
CviAII	CATG	7 cut(s)	118, 817, 999, 1099, 1211, 1270, 1374
CviQI	GTAC	8 cut(s)	205, 218, 325, 334, 373, 556, 646, 1114
DdeI	CTNAG	5 cut(s)	425, 746, 882, 1076, 1244
DpnI	GATC	5 cut(s)	633, 719, 737, 987, 1097
DpnII	GATC	5 cut(s)	631, 717, 735, 985, 1095
DrdI	GACNNNNNNGTC	1 cut(s)	635
DseDI	GACNNNNNNGTC	1 cut(s)	635
EaeI	YGGCCR	2 cut(s)	1262, 1376
Eam1104I	CTCTTC	1 cut(s)	1114
EarI	CTCTTC	1 cut(s)	1114
Eco130I	CCWWGG	3 cut(s)	190, 1334, 1373
Eco24I	GRGCYC	2 cut(s)	813, 1222
Eco31I	GGTCTC	1 cut(s)	1230
Eco32I	GATATC	1 cut(s)	550
Eco47I	GGWCC	2 cut(s)	944, 1006
Eco57I	CTGAAG	1 cut(s)	739
Eco81I	CCTNAGG	1 cut(s)	1244
Eco88I	CYCGRG	3 cut(s)	53, 242, 723
Eco91I	GGTNACC	1 cut(s)	1205
EcoO109I	RGGNCCY	1 cut(s)	944
EcoO65I	GGTNACC	1 cut(s)	1205
EcoRII	CCWGG	3 cut(s)	161, 780, 1278
EcoRV	GATATC	1 cut(s)	550
EcoT14I	CCWWGG	3 cut(s)	190, 1334, 1373
EcoT22I	ATGCAT	1 cut(s)	26
EcoT38I	GRGCYC	2 cut(s)	813, 1222
ErhI	CCWWGG	3 cut(s)	190, 1334, 1373
FaeI	CATG	7 cut(s)	121, 820, 1002, 1102, 1214, 1273, 1377
FalI	AAGNNNNNCTT	2 cut(s)	191, 223
FaqI	GGGAC	3 cut(s)	957, 1443, 1544
FatI	CATG	7 cut(s)	117, 816, 998, 1098, 1210, 1269, 1373
FblI	GTMKAC	1 cut(s)	1029
Fnu4HI	GCNGC	3 cut(s)	183, 270, 684
FokI	GGATG	6 cut(s)	568, 596, 658, 1015, 1058, 1346
FriOI	GRGCYC	2 cut(s)	813, 1222
Fsp4HI	GCNGC	3 cut(s)	183, 270, 684
FspBI	CTAG	5 cut(s)	342, 407, 731, 1037, 1335
GluI	GCNGC	3 cut(s)	183, 270, 684
GsaI	CCCAGC	1 cut(s)	951
HaeIII	GGCC	8 cut(s)	86, 527, 920, 1035, 1061, 1264, 1277, 1378
Hin1II	CATG	7 cut(s)	121, 820, 1002, 1102, 1214, 1273, 1377
HincII	GTYRAC	2 cut(s)	279, 1030
HindII	GTYRAC	2 cut(s)	279, 1030
HindIII	AAGCTT	1 cut(s)	1522
HinfI	GANTC	4 cut(s)	311, 365, 761, 1557
HphI	GGTGA	4 cut(s)	445, 461, 814, 1495
Hpy166II	GTNNAC	7 cut(s)	279, 334, 778, 822, 1030, 1412, 1459
Hpy188I	TCNGA	3 cut(s)	214, 316, 428
Hpy188III	TCNNGA	5 cut(s)	92, 151, 298, 1099, 1561
Hpy8I	GTNNAC	7 cut(s)	279, 334, 778, 822, 1030, 1412, 1459
Hpy99I	CGWCG	2 cut(s)	152, 1034
HpyAV	CCTTC	6 cut(s)	39, 91, 301, 673, 1157, 1174
HpyCH4III	ACNGT	4 cut(s)	457, 964, 1113, 1434
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	9 cut(s)	24, 103, 362, 490, 715, 1232, 1325, 1370, 1548
HpyF10VI	GCNNNNNNNGC	9 cut(s)	167, 487, 578, 606, 668, 704, 887, 1311, 1451
HpyF3I	CTNAG	5 cut(s)	425, 746, 882, 1076, 1244
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	7 cut(s)	121, 820, 1002, 1102, 1214, 1273, 1377
KflI	GGGWCCC	1 cut(s)	944
KpnI	GGTACC	1 cut(s)	221
KroI	GCCGGC	1 cut(s)	605
KroNI	GCCGGC	1 cut(s)	607
Kzo9I	GATC	5 cut(s)	631, 717, 735, 985, 1095
LmnI	GCTCC	4 cut(s)	172, 602, 808, 1217
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	7 cut(s)	33, 281, 590, 618, 680, 862, 899
MabI	ACCWGGT	1 cut(s)	780
MaeI	CTAG	5 cut(s)	342, 407, 731, 1037, 1335
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	5 cut(s)	350, 791, 1150, 1166, 1205
MalI	GATC	5 cut(s)	633, 719, 737, 987, 1097
MboI	GATC	5 cut(s)	631, 717, 735, 985, 1095
MboII	GAAGA	5 cut(s)	19, 745, 1077, 1131, 1546
MfeI	CAATTG	2 cut(s)	767, 1011
MflI	RGATCY	1 cut(s)	735
MhlI	GDGCHC	5 cut(s)	147, 177, 813, 1222, 1342
MlsI	TGGCCA	1 cut(s)	1264
MluCI	AATT	7 cut(s)	78, 516, 618, 656, 767, 933, 1011
MluNI	TGGCCA	1 cut(s)	1264
MlyI	GAGTC	2 cut(s)	305, 1566
MmeI	TCCRAC	3 cut(s)	609, 699, 763
Mox20I	TGGCCA	1 cut(s)	1264
Mph1103I	ATGCAT	1 cut(s)	26
MroNI	GCCGGC	1 cut(s)	605
MscI	TGGCCA	1 cut(s)	1264
MseI	TTAA	3 cut(s)	9, 515, 519
MslI	CAYNNNNRTG	4 cut(s)	19, 1097, 1194, 1424
Msp20I	TGGCCA	1 cut(s)	1264
MspA1I	CMGCKG	3 cut(s)	170, 600, 789
MunI	CAATTG	2 cut(s)	767, 1011
MvaI	CCWGG	3 cut(s)	163, 782, 1280
MwoI	GCNNNNNNNGC	9 cut(s)	167, 487, 578, 606, 668, 704, 887, 1311, 1451
NaeI	GCCGGC	1 cut(s)	607
NciI	CCSGG	9 cut(s)	243, 244, 377, 418, 565, 626, 724, 725, 1222
NcoI	CCATGG	1 cut(s)	1373
NdeII	GATC	5 cut(s)	631, 717, 735, 985, 1095
NgoMIV	GCCGGC	1 cut(s)	605
NlaIII	CATG	7 cut(s)	121, 820, 1002, 1102, 1214, 1273, 1377
NmuCI	GTSAC	2 cut(s)	1150, 1166
NsiI	ATGCAT	1 cut(s)	26
NspI	RCATGY	1 cut(s)	820
OliI	CACNNNNGTG	2 cut(s)	1194, 1424
PacI	TTAATTAA	1 cut(s)	519
PagI	TCATGA	1 cut(s)	1098
PciI	ACATGT	1 cut(s)	816
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PdiI	GCCGGC	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	365, 761
PkrI	GCNGC	3 cut(s)	184, 271, 685
PleI	GAGTC	2 cut(s)	305, 1565
PpsI	GAGTC	2 cut(s)	305, 1565
PpuMI	RGGWCCY	1 cut(s)	944
PscI	ACATGT	1 cut(s)	816
Psp5II	RGGWCCY	1 cut(s)	944
Psp6I	CCWGG	3 cut(s)	161, 780, 1278
PspEI	GGTNACC	1 cut(s)	1205
PspFI	CCCAGC	1 cut(s)	947
PspGI	CCWGG	3 cut(s)	161, 780, 1278
PspPI	GGNCC	5 cut(s)	525, 918, 944, 1006, 1276
PspPPI	RGGWCCY	1 cut(s)	944
PstI	CTGCAG	1 cut(s)	1550
PsuI	RGATCY	1 cut(s)	735
RsaI	GTAC	8 cut(s)	206, 219, 326, 335, 374, 557, 647, 1115
RsaNI	GTAC	8 cut(s)	205, 218, 325, 334, 373, 556, 646, 1114
RseI	CAYNNNNRTG	4 cut(s)	19, 1097, 1194, 1424
SalI	GTCGAC	1 cut(s)	1028
SaqAI	TTAA	3 cut(s)	9, 515, 519
SatI	GCNGC	3 cut(s)	183, 270, 684
Sau3AI	GATC	5 cut(s)	631, 717, 735, 985, 1095
Sau96I	GGNCC	5 cut(s)	525, 918, 944, 1006, 1276
SchI	GAGTC	2 cut(s)	305, 1566
SduI	GDGCHC	5 cut(s)	147, 177, 813, 1222, 1342
SexAI	ACCWGGT	1 cut(s)	780
SfaNI	GCATC	7 cut(s)	33, 281, 590, 618, 680, 862, 899
SfcI	CTRYAG	2 cut(s)	1070, 1546
SinI	GGWCC	2 cut(s)	944, 1006
SmaI	CCCGGG	2 cut(s)	244, 725
SmiMI	CAYNNNNRTG	4 cut(s)	19, 1097, 1194, 1424
Sse9I	AATT	7 cut(s)	78, 516, 618, 656, 767, 933, 1011
SsiI	CCGC	6 cut(s)	170, 269, 600, 684, 789, 1343
SspMI	CTAG	5 cut(s)	342, 407, 731, 1037, 1335
StyI	CCWWGG	3 cut(s)	190, 1334, 1373
TaaI	ACNGT	4 cut(s)	457, 964, 1113, 1434
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	9 cut(s)	36, 150, 531, 546, 798, 930, 1029, 1056, 1087
TasI	AATT	7 cut(s)	78, 516, 618, 656, 767, 933, 1011
TatI	WGTACW	2 cut(s)	333, 1113
TauI	GCSGC	2 cut(s)	272, 686
TfiI	GAWTC	2 cut(s)	365, 761
Tru1I	TTAA	3 cut(s)	9, 515, 519
Tru9I	TTAA	3 cut(s)	9, 515, 519
TscAI	CASTG	6 cut(s)	336, 361, 402, 763, 1394, 1431
TseFI	GTSAC	2 cut(s)	1150, 1166
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	2 cut(s)	1150, 1166
TspDTI	ATGAA	3 cut(s)	987, 1115, 1193
TspGWI	ACGGA	1 cut(s)	1523
TspMI	CCCGGG	2 cut(s)	242, 723
TspRI	CASTG	6 cut(s)	336, 361, 402, 763, 1394, 1431
VpaK11BI	GGWCC	2 cut(s)	944, 1006
XapI	RAATTY	2 cut(s)	656, 933
XceI	RCATGY	1 cut(s)	820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1453
XmaI	CCCGGG	2 cut(s)	242, 723
XmaJI	CCTAGG	1 cut(s)	1334
XmiI	GTMKAC	1 cut(s)	1029
XspI	CTAG	5 cut(s)	342, 407, 731, 1037, 1335
Zsp2I	ATGCAT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.