Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

8311509 .. 8313258

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G004150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGCAAAACCCTGAACACTCGGGGCGACTCAGTAAATGGGCGATTGAGCTCAGCGAATTTGACATCGAGTACAAGCCAAGAACCGCCATGAAGGGCCAGGCAGTGGCGGACTTCATCGCTGAACTTACTGAGCGTCAGCCGGAACCCGGTACTCAAACCAATCCCGGAACCGAAATGATAATCAGTGCAGAGGCAACTCCCCCACAGTCAGACTGGGACCTACATGTGGACGGCTCCGCCTGTGCCAAGGCCAGCGGCGCCGGAGTCATCTTAACCGGACCTGGGGGACTAAACGCAGAGTACGCGTTGAAGTTCAACTTCAAAGCTTCAAACAATATGGCGGAGTACGAGGCGCTCATCGCCGGCTTACTCCTCGCCATTGACTCAGGAGCTGACAGCGTCAACATATTCAGCGACTCCCAACTAGTCGTCAACCAGGTCAATGACAGTTTCCAAGCCAAGGACCAGCAGCTAGCGGCGTATTTGGGGTACGTCAAAACATTGCTAAAAAAGTTCAAATTCCATACAATCACACAGATCCCCAGGGAAAAGAACGCTAAGGCTGATTCACTGGCGAGACTGGCGACCGCCCAACCACATCAGAGTCCAGCGGACACAAGGGTGGAGTGCCTGGACAAGCCAAGTATCACAAAGACCCTGGCGGAAATCTTCAACGTTCAGGTCAACCCCAGCTGGATGGATGAGATCATTGCATATAAGCGCAACGGAACCAAGTGGATAGAAGCAGAACCACTAACGGCAATAACTACCGCCAAGGTAATTCACTTCCTCTGGAAGAATATCTACTGCCGCTACGGTGTCCCACACACAATCATTACAGACAACGGTACACAGTTCAACAATGACGAGCTCATCTCCTTCACCGCCAACTTAGGCACCAAGTTGAGATTTGCGTCTGTCGCCCACCCCCAGACCAATGGTCAGGTCGAAGCGGCAAACAAGATAATCAAAAAGTTGTTAAAAAAGAAGCTCGACGACGCCAAGGGTTTATGGGCGGAAAGGCTCCCAGAGGTCCTGTGGGCCATCCGAACAACTCCAACCTCCGCCACCGGAGAAACTCCTTTTTGTATGATGTTCGGCACAGAGGCTGTCTTACCCATTGAAGTTACTCAACCTACCGCTAGAGTCGAAGGCTACTGCCCAAAGACCAACAGCGTCGGCGTCAACTTGGACAGGGACCTCCTAGAAGAGAAGAGACTCAAGGCCCATTTACACAATCTACAAAACAAGCAACGGGTATCACGTTTTTACAACGCCAGAGTCAGGGCCCGGAACCTCCAACTGGGGACTCGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

439

Amino Acids

48.68

Weight (kDa)

8.41

Isoelectric Point (pI)

33.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_H	PF00075	74 - 153	1.3e-06	RNase H
RVT_3	PF13456	82 - 194	1e-19	Reverse transcriptase-like
rve	PF00665	244 - 310	2.5e-06	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	257, 896
AccB7I	CCANNNNNTGG	1 cut(s)	103
AccII	CGCG	1 cut(s)	305
AclI	AACGTT	1 cut(s)	675
AclWI	GGATC	1 cut(s)	532
AcsI	RAATTY	2 cut(s)	56, 518
AcyI	GRCGYC	3 cut(s)	258, 999, 1182
AfaI	GTAC	6 cut(s)	71, 151, 302, 347, 491, 850
AfiI	CCNNNNNNNGG	7 cut(s)	103, 146, 226, 282, 460, 1284, 1303
AflIII	ACRYGT	2 cut(s)	223, 303
AgsI	TTSAA	8 cut(s)	310, 316, 322, 330, 517, 673, 859, 1124
AhdI	GACNNNNNGTC	1 cut(s)	939
AhlI	ACTAGT	1 cut(s)	424
AjnI	CCWGG	6 cut(s)	96, 280, 435, 542, 630, 657
AleI	CACNNNNGTG	1 cut(s)	620
AluBI	AGCT	7 cut(s)	49, 326, 392, 472, 693, 871, 991
AluI	AGCT	7 cut(s)	49, 326, 392, 472, 693, 871, 991
Alw21I	GWGCWC	2 cut(s)	51, 873
Alw26I	GTCTC	2 cut(s)	571, 1210
AlwI	GGATC	1 cut(s)	532
AlwNI	CAGNNNCTG	2 cut(s)	392, 1109
Ama87I	CYCGRG	1 cut(s)	19
AoxI	GGCC	5 cut(s)	94, 249, 1041, 1224, 1287
ApaI	GGGCCC	1 cut(s)	1291
ApeKI	GCWGC	1 cut(s)	469
ApoI	RAATTY	2 cut(s)	56, 518
AspLEI	GCGC	3 cut(s)	260, 355, 723
AsuC2I	CCSGG	3 cut(s)	147, 165, 1291
AsuHPI	GGTGA	1 cut(s)	874
AsuNHI	GCTAGC	1 cut(s)	472
AvaI	CYCGRG	1 cut(s)	19
AvaII	GGWCC	5 cut(s)	217, 278, 463, 1033, 1198
BaeGI	GKGCMC	1 cut(s)	1291
BanI	GGYRCC	2 cut(s)	257, 896
BanII	GRGCYC	3 cut(s)	51, 873, 1291
BarI	GAAGNNNNNNTAC	2 cut(s)	788, 820
Bbv12I	GWGCWC	2 cut(s)	51, 873
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	2 cut(s)	691, 1052
BceAI	ACGGC	2 cut(s)	247, 774
BciT130I	CCWGG	6 cut(s)	98, 282, 437, 544, 632, 659
BcnI	CCSGG	3 cut(s)	147, 165, 1291
BcoDI	GTCTC	2 cut(s)	571, 1210
BcuI	ACTAGT	1 cut(s)	424
BfaI	CTAG	4 cut(s)	425, 473, 1143, 1205
BfoI	RGCGCY	2 cut(s)	261, 356
BisI	GCNGC	5 cut(s)	256, 470, 477, 811, 954
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	5 cut(s)	257, 471, 478, 812, 955
Bme1390I	CCNGG	9 cut(s)	98, 147, 165, 282, 437, 544, 632, 659, 1291
Bme18I	GGWCC	5 cut(s)	217, 278, 463, 1033, 1198
BmeRI	GACNNNNNGTC	1 cut(s)	939
BmeT110I	CYCGRG	1 cut(s)	19
BmrFI	CCNGG	9 cut(s)	98, 147, 165, 282, 437, 544, 632, 659, 1291
BmrI	ACTGGG	2 cut(s)	223, 1313
BmtI	GCTAGC	1 cut(s)	476
BmuI	ACTGGG	2 cut(s)	223, 1313
BplI	GAGNNNNNCTC	2 cut(s)	860, 892
Bpu10I	CCTNAGC	1 cut(s)	558
Bpu1102I	GCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	1205
BpuMI	CCSGG	3 cut(s)	147, 165, 1291
BsaHI	GRCGYC	3 cut(s)	258, 999, 1182
BsaJI	CCNNGG	8 cut(s)	246, 281, 459, 542, 543, 657, 774, 1002
BsaWI	WCCGGW	2 cut(s)	275, 1070
Bsc4I	CCNNNNNNNGG	7 cut(s)	103, 146, 226, 282, 460, 1284, 1303
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	4 cut(s)	218, 576, 585, 1308
Bse3DI	GCAATG	2 cut(s)	500, 708
BseBI	CCWGG	6 cut(s)	98, 282, 437, 544, 632, 659
BseDI	CCNNGG	8 cut(s)	246, 281, 459, 542, 543, 657, 774, 1002
BseGI	GGATG	3 cut(s)	702, 706, 1044
BseLI	CCNNNNNNNGG	7 cut(s)	103, 146, 226, 282, 460, 1284, 1303
BseMI	GCAATG	2 cut(s)	500, 708
BseMII	CTCAG	4 cut(s)	43, 64, 120, 399
BseNI	ACTGG	4 cut(s)	218, 576, 585, 1308
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	1291
BseXI	GCAGC	1 cut(s)	481
BseYI	CCCAGC	1 cut(s)	689
BsgI	GTGCAG	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	305
Bsh1285I	CGRYCG	1 cut(s)	588
BshFI	GGCC	5 cut(s)	96, 251, 1043, 1226, 1289
BshNI	GGYRCC	2 cut(s)	257, 896
BsiEI	CGRYCG	1 cut(s)	588
BsiHKAI	GWGCWC	2 cut(s)	51, 873
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	8 cut(s)	140, 147, 165, 261, 276, 363, 1071, 1291
BslFI	GGGAC	4 cut(s)	230, 300, 806, 1211
BslI	CCNNNNNNNGG	7 cut(s)	103, 146, 226, 282, 460, 1284, 1303
BsmAI	GTCTC	2 cut(s)	571, 1210
BsmFI	GGGAC	4 cut(s)	230, 300, 806, 1211
BsnI	GGCC	5 cut(s)	96, 251, 1043, 1226, 1289
BsoBI	CYCGRG	1 cut(s)	19
Bsp120I	GGGCCC	1 cut(s)	1287
Bsp1286I	GDGCHC	3 cut(s)	51, 873, 1291
Bsp143I	GATC	2 cut(s)	537, 705
Bsp1720I	GCTNAGC	1 cut(s)	50
BspANI	GGCC	5 cut(s)	96, 251, 1043, 1226, 1289
BspCNI	CTCAG	4 cut(s)	42, 63, 121, 398
BspFNI	CGCG	1 cut(s)	305
BspHI	TCATGA	1 cut(s)	1316
BspOI	GCTAGC	1 cut(s)	476
BspPI	GGATC	1 cut(s)	532
BspT107I	GGYRCC	2 cut(s)	257, 896
BsrDI	GCAATG	2 cut(s)	500, 708
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	4 cut(s)	218, 576, 585, 1308
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	8 cut(s)	246, 281, 459, 542, 543, 657, 774, 1002
BssMI	GATC	2 cut(s)	537, 705
BssNI	GRCGYC	3 cut(s)	258, 999, 1182
BssT1I	CCWWGG	4 cut(s)	246, 459, 774, 1002
Bst2UI	CCWGG	6 cut(s)	98, 282, 437, 544, 632, 659
Bst4CI	ACNGT	5 cut(s)	207, 449, 818, 848, 855
Bst6I	CTCTTC	2 cut(s)	1203, 1208
BstACI	GRCGYC	3 cut(s)	258, 999, 1182
BstC8I	GCNNGC	3 cut(s)	253, 364, 474
BstDEI	CTNAG	6 cut(s)	29, 50, 129, 385, 558, 892
BstF5I	GGATG	3 cut(s)	702, 706, 1044
BstFNI	CGCG	1 cut(s)	305
BstH2I	RGCGCY	2 cut(s)	261, 356
BstHHI	GCGC	3 cut(s)	260, 355, 723
BstKTI	GATC	2 cut(s)	540, 708
BstMAI	GTCTC	2 cut(s)	571, 1210
BstMBI	GATC	2 cut(s)	537, 705
BstMCI	CGRYCG	1 cut(s)	588
BstMWI	GCNNNNNNNGC	5 cut(s)	257, 302, 359, 581, 920
BstNI	CCWGG	6 cut(s)	98, 282, 437, 544, 632, 659
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	9 cut(s)	96, 145, 163, 280, 435, 542, 630, 657, 1289
BstSLI	GKGCMC	1 cut(s)	1291
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	481
BstX2I	RGATCY	1 cut(s)	537
BstXI	CCANNNNNNTGG	2 cut(s)	697, 938
BstYI	RGATCY	1 cut(s)	537
BsuRI	GGCC	5 cut(s)	96, 251, 1043, 1226, 1289
BtgZI	GCGATG	2 cut(s)	100, 343
BtsCI	GGATG	3 cut(s)	702, 706, 1044
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	3 cut(s)	108, 190, 569
Cac8I	GCNNGC	3 cut(s)	253, 364, 474
CaiI	CAGNNNCTG	2 cut(s)	392, 1109
CciI	TCATGA	1 cut(s)	1316
CfoI	GCGC	3 cut(s)	260, 355, 723
Cfr10I	RCCGGY	1 cut(s)	362
CseI	GACGC	6 cut(s)	122, 388, 903, 1007, 1165, 1171
CsiI	ACCWGGT	1 cut(s)	435
Csp6I	GTAC	6 cut(s)	70, 150, 301, 346, 490, 849
CviAII	CATG	3 cut(s)	88, 224, 1317
CviQI	GTAC	6 cut(s)	70, 150, 301, 346, 490, 849
DdeI	CTNAG	6 cut(s)	29, 50, 129, 385, 558, 892
DinI	GGCGCC	1 cut(s)	259
DpnI	GATC	2 cut(s)	539, 707
DpnII	GATC	2 cut(s)	537, 705
DriI	GACNNNNNGTC	1 cut(s)	939
Eam1104I	CTCTTC	2 cut(s)	1203, 1208
Eam1105I	GACNNNNNGTC	1 cut(s)	939
EarI	CTCTTC	2 cut(s)	1203, 1208
EciI	GGCGGA	6 cut(s)	122, 226, 356, 677, 1031, 1054
Ecl136II	GAGCTC	2 cut(s)	49, 871
Eco130I	CCWWGG	4 cut(s)	246, 459, 774, 1002
Eco24I	GRGCYC	3 cut(s)	51, 873, 1291
Eco47I	GGWCC	5 cut(s)	217, 278, 463, 1033, 1198
Eco53kI	GAGCTC	2 cut(s)	49, 871
Eco88I	CYCGRG	1 cut(s)	19
EcoICRI	GAGCTC	2 cut(s)	49, 871
EcoO109I	RGGNCCY	4 cut(s)	217, 1033, 1198, 1287
EcoRII	CCWGG	6 cut(s)	96, 280, 435, 542, 630, 657
EcoT14I	CCWWGG	4 cut(s)	246, 459, 774, 1002
EcoT38I	GRGCYC	3 cut(s)	51, 873, 1291
EgeI	GGCGCC	1 cut(s)	259
EheI	GGCGCC	1 cut(s)	259
ErhI	CCWWGG	4 cut(s)	246, 459, 774, 1002
FaeI	CATG	3 cut(s)	91, 227, 1320
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FaqI	GGGAC	4 cut(s)	230, 300, 806, 1211
FatI	CATG	3 cut(s)	87, 223, 1316
Fnu4HI	GCNGC	5 cut(s)	256, 470, 477, 811, 954
FokI	GGATG	3 cut(s)	709, 713, 1031
FriOI	GRGCYC	3 cut(s)	51, 873, 1291
Fsp4HI	GCNGC	5 cut(s)	256, 470, 477, 811, 954
FspBI	CTAG	4 cut(s)	425, 473, 1143, 1205
GlaI	GCGC	3 cut(s)	259, 354, 722
GluI	GCNGC	5 cut(s)	256, 470, 477, 811, 954
GsaI	CCCAGC	1 cut(s)	693
HaeII	RGCGCY	2 cut(s)	261, 356
HaeIII	GGCC	5 cut(s)	96, 251, 1043, 1226, 1289
HapII	CCGG	8 cut(s)	140, 147, 165, 261, 276, 363, 1071, 1291
HgaI	GACGC	6 cut(s)	122, 388, 903, 1007, 1165, 1171
HhaI	GCGC	3 cut(s)	260, 355, 723
Hin1I	GRCGYC	3 cut(s)	258, 999, 1182
Hin1II	CATG	3 cut(s)	91, 227, 1320
Hin6I	GCGC	3 cut(s)	258, 353, 721
HinP1I	GCGC	3 cut(s)	258, 353, 721
HincII	GTYRAC	4 cut(s)	403, 433, 685, 1186
HindII	GTYRAC	4 cut(s)	403, 433, 685, 1186
HindIII	AAGCTT	1 cut(s)	324
HpaII	CCGG	8 cut(s)	140, 147, 165, 261, 276, 363, 1071, 1291
HphI	GGTGA	1 cut(s)	874
Hpy166II	GTNNAC	6 cut(s)	229, 403, 433, 685, 851, 1186
Hpy188I	TCNGA	3 cut(s)	211, 603, 1049
Hpy188III	TCNNGA	3 cut(s)	387, 793, 1317
Hpy8I	GTNNAC	6 cut(s)	229, 403, 433, 685, 851, 1186
Hpy99I	CGWCG	3 cut(s)	998, 1001, 1181
HpyAV	CCTTC	3 cut(s)	85, 889, 1145
HpyCH4III	ACNGT	5 cut(s)	207, 449, 818, 848, 855
HpyCH4IV	ACGT	3 cut(s)	492, 675, 1264
HpyCH4V	TGCA	3 cut(s)	4, 188, 713
HpyF10VI	GCNNNNNNNGC	5 cut(s)	257, 302, 359, 581, 920
HpyF3I	CTNAG	6 cut(s)	29, 50, 129, 385, 558, 892
HpySE526I	ACGT	3 cut(s)	492, 675, 1264
Hsp92I	GRCGYC	3 cut(s)	258, 999, 1182
Hsp92II	CATG	3 cut(s)	91, 227, 1320
HspAI	GCGC	3 cut(s)	258, 353, 721
KasI	GGCGCC	1 cut(s)	257
KroI	GCCGGC	1 cut(s)	362
KroNI	GCCGGC	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	537, 705
LmnI	GCTCC	3 cut(s)	239, 389, 1029
Lsp1109I	GCAGC	1 cut(s)	481
MabI	ACCWGGT	1 cut(s)	435
MaeI	CTAG	4 cut(s)	425, 473, 1143, 1205
MaeII	ACGT	3 cut(s)	492, 675, 1264
MaeIII	GTNAC	1 cut(s)	1126
MalI	GATC	2 cut(s)	539, 707
MboI	GATC	2 cut(s)	537, 705
MboII	GAAGA	4 cut(s)	661, 808, 1220, 1225
MflI	RGATCY	1 cut(s)	537
MhlI	GDGCHC	3 cut(s)	51, 873, 1291
MluCI	AATT	3 cut(s)	56, 518, 780
MluI	ACGCGT	1 cut(s)	303
Mly113I	GGCGCC	1 cut(s)	258
MlyI	GAGTC	9 cut(s)	21, 273, 377, 410, 613, 1155, 1212, 1290, 1303
MmeI	TCCRAC	1 cut(s)	1082
MnlI	CCTC	9 cut(s)	184, 343, 383, 800, 1024, 1072, 1099, 1211, 1307
MroNI	GCCGGC	1 cut(s)	362
MseI	TTAA	2 cut(s)	272, 980
MslI	CAYNNNNRTG	1 cut(s)	620
MspA1I	CMGCKG	3 cut(s)	255, 611, 693
MspI	CCGG	8 cut(s)	140, 147, 165, 261, 276, 363, 1071, 1291
MspR9I	CCNGG	9 cut(s)	98, 147, 165, 282, 437, 544, 632, 659, 1291
MvaI	CCWGG	6 cut(s)	98, 282, 437, 544, 632, 659
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	5 cut(s)	257, 302, 359, 581, 920
NaeI	GCCGGC	1 cut(s)	364
NarI	GGCGCC	1 cut(s)	258
NciI	CCSGG	3 cut(s)	147, 165, 1291
NdeII	GATC	2 cut(s)	537, 705
NgoMIV	GCCGGC	1 cut(s)	362
NheI	GCTAGC	1 cut(s)	472
NlaIII	CATG	3 cut(s)	91, 227, 1320
NspI	RCATGY	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	620
PagI	TCATGA	1 cut(s)	1316
PasI	CCCWGGG	1 cut(s)	543
PciI	ACATGT	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	1261
PdiI	GCCGGC	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	566
PflFI	GACNNNGTC	2 cut(s)	398, 1312
PflMI	CCANNNNNTGG	1 cut(s)	103
PfoI	TCCNGGA	1 cut(s)	163
PkrI	GCNGC	5 cut(s)	257, 471, 478, 812, 955
PleI	GAGTC	9 cut(s)	21, 272, 377, 410, 612, 1154, 1212, 1289, 1303
PluTI	GGCGCC	1 cut(s)	261
PpsI	GAGTC	9 cut(s)	21, 272, 377, 410, 612, 1154, 1212, 1289, 1303
PpuMI	RGGWCCY	3 cut(s)	217, 1033, 1198
PscI	ACATGT	1 cut(s)	223
Psp124BI	GAGCTC	2 cut(s)	51, 873
Psp1406I	AACGTT	1 cut(s)	675
Psp5II	RGGWCCY	3 cut(s)	217, 1033, 1198
Psp6I	CCWGG	6 cut(s)	96, 280, 435, 542, 630, 657
PspFI	CCCAGC	1 cut(s)	689
PspGI	CCWGG	6 cut(s)	96, 280, 435, 542, 630, 657
PspOMI	GGGCCC	1 cut(s)	1287
PspPPI	RGGWCCY	3 cut(s)	217, 1033, 1198
PstNI	CAGNNNCTG	2 cut(s)	392, 1109
PsuI	RGATCY	1 cut(s)	537
PsyI	GACNNNGTC	2 cut(s)	398, 1312
PvuII	CAGCTG	1 cut(s)	693
RsaI	GTAC	6 cut(s)	71, 151, 302, 347, 491, 850
RsaNI	GTAC	6 cut(s)	70, 150, 301, 346, 490, 849
RseI	CAYNNNNRTG	1 cut(s)	620
SacI	GAGCTC	2 cut(s)	51, 873
SaqAI	TTAA	2 cut(s)	272, 980
SatI	GCNGC	5 cut(s)	256, 470, 477, 811, 954
Sau3AI	GATC	2 cut(s)	537, 705
SchI	GAGTC	9 cut(s)	21, 273, 377, 410, 613, 1155, 1212, 1290, 1303
ScrFI	CCNGG	9 cut(s)	98, 147, 165, 282, 437, 544, 632, 659, 1291
SduI	GDGCHC	3 cut(s)	51, 873, 1291
SexAI	ACCWGGT	1 cut(s)	435
SfoI	GGCGCC	1 cut(s)	259
SinI	GGWCC	5 cut(s)	217, 278, 463, 1033, 1198
SmiMI	CAYNNNNRTG	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	1220
SmoI	CTYRAG	1 cut(s)	1220
SpeI	ACTAGT	1 cut(s)	424
Sse9I	AATT	3 cut(s)	56, 518, 780
SspDI	GGCGCC	1 cut(s)	257
SspMI	CTAG	4 cut(s)	425, 473, 1143, 1205
SstI	GAGCTC	2 cut(s)	51, 873
StyD4I	CCNGG	9 cut(s)	96, 145, 163, 280, 435, 542, 630, 657, 1289
StyI	CCWWGG	4 cut(s)	246, 459, 774, 1002
TaaI	ACNGT	5 cut(s)	207, 449, 818, 848, 855
TaiI	ACGT	3 cut(s)	495, 678, 1267
TaqI	TCGA	4 cut(s)	66, 948, 993, 1149
TaqII	GACCGA	1 cut(s)	1302
TasI	AATT	3 cut(s)	56, 518, 780
TatI	WGTACW	1 cut(s)	69
TauI	GCSGC	4 cut(s)	258, 479, 813, 956
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	2 cut(s)	272, 980
Tru9I	TTAA	2 cut(s)	272, 980
TscAI	CASTG	3 cut(s)	108, 190, 576
TseI	GCWGC	1 cut(s)	469
TspDTI	ATGAA	2 cut(s)	103, 104
TspGWI	ACGGA	1 cut(s)	741
TspRI	CASTG	3 cut(s)	108, 190, 576
Tth111I	GACNNNGTC	2 cut(s)	398, 1312
Van91I	CCANNNNNTGG	1 cut(s)	103
VpaK11BI	GGWCC	5 cut(s)	217, 278, 463, 1033, 1198
XapI	RAATTY	2 cut(s)	56, 518
XceI	RCATGY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	2 cut(s)	210, 1035
XspI	CTAG	4 cut(s)	425, 473, 1143, 1205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.