Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8485695.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

1689 .. 2306

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8485695.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ctggggtacgtcaagacactcctcaaaaaattcaaatttcacatcattacacagatccccagggaaaagaactccaaggctgactcactggcaagattcgtaaccgcccaaccacaccaaagtccgacggacacaagggtggagtgtcttgacaggctaagcatcaccaaaaccctggcgaagattttcaacattgaggtcaatcccagctggattgatgaaatcattgagtacaagcgcaatggcacactgccagcagataaggttgaagcgcggcaactcaagcggagggcagtccgttgcaacatccaaaatggcaagctttaccaccaaggattcacccatcccaaccttcggtgtctaaccccagaagaggggaaggttgtccttgccatgatacacgctagggaatgcgaaaaccactccggcgccagatctctggcagtctggccaatccaacaatgtgacaaggctacttctagcccacactcgacaacgactccaggaaagtctcaggtcctgccacaagcgccaacaatatgccgaccttccccatgccctagcggaacctctatccatcatcattggcccatggatccactccacgtggggccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

205

Amino Acids

23.05

Weight (kDa)

9.53

Isoelectric Point (pI)

52.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	428
AccII	CGCG	1 cut(s)	274
AciI	CCGC	4 cut(s)	105, 274, 286, 564
AclWI	GGATC	3 cut(s)	49, 590, 603
AcoI	YGGCCR	1 cut(s)	449
AcsI	RAATTY	2 cut(s)	29, 35
AcvI	CACGTG	1 cut(s)	607
AcyI	GRCGYC	1 cut(s)	429
AfaI	GTAC	2 cut(s)	8, 233
AfiI	CCNNNNNNNGG	3 cut(s)	354, 373, 374
AgsI	TTSAA	3 cut(s)	34, 190, 269
AjnI	CCWGG	3 cut(s)	59, 174, 502
AleI	CACNNNNGTG	1 cut(s)	137
AluBI	AGCT	2 cut(s)	210, 322
AluI	AGCT	2 cut(s)	210, 322
Alw26I	GTCTC	1 cut(s)	516
AlwI	GGATC	3 cut(s)	49, 590, 603
AlwNI	CAGNNNCTG	1 cut(s)	520
AoxI	GGCC	3 cut(s)	449, 587, 611
ApoI	RAATTY	2 cut(s)	29, 35
Asp700I	GAANNNNTTC	1 cut(s)	185
AspLEI	GCGC	4 cut(s)	240, 274, 431, 532
AspS9I	GGNCC	3 cut(s)	517, 588, 611
AsuHPI	GGTGA	2 cut(s)	157, 331
AvaII	GGWCC	1 cut(s)	517
BalI	TGGCCA	1 cut(s)	451
BamHI	GGATCC	1 cut(s)	595
BanI	GGYRCC	1 cut(s)	428
BbrPI	CACGTG	1 cut(s)	607
BccI	CCATC	2 cut(s)	351, 585
BciT130I	CCWGG	3 cut(s)	61, 176, 504
BcoDI	GTCTC	1 cut(s)	516
BfaI	CTAG	3 cut(s)	405, 480, 561
BfoI	RGCGCY	2 cut(s)	432, 533
BglII	AGATCT	1 cut(s)	434
BisI	GCNGC	1 cut(s)	275
BlpI	GCTNAGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	276
Bme1390I	CCNGG	3 cut(s)	61, 176, 504
Bme18I	GGWCC	1 cut(s)	517
BmgT120I	GGNCC	3 cut(s)	517, 588, 611
BmiI	GGNNCC	4 cut(s)	430, 568, 597, 612
BmrFI	CCNGG	3 cut(s)	61, 176, 504
BmsI	GCATC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	486
Bpu1102I	GCTNAGC	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	266
BsaAI	YACGTR	1 cut(s)	607
BsaHI	GRCGYC	1 cut(s)	429
BsaJI	CCNNGG	6 cut(s)	59, 60, 75, 174, 331, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	484, 514
Bsc4I	CCNNNNNNNGG	3 cut(s)	354, 373, 374
Bse1I	ACTGG	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	247
BseBI	CCWGG	3 cut(s)	61, 176, 504
BseDI	CCNNGG	6 cut(s)	59, 60, 75, 174, 331, 591
BseGI	GGATG	2 cut(s)	306, 343
BseLI	CCNNNNNNNGG	3 cut(s)	354, 373, 374
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	206
Bsh1236I	CGCG	1 cut(s)	274
BshFI	GGCC	3 cut(s)	451, 589, 613
BshNI	GGYRCC	1 cut(s)	428
BsiSI	CCGG	1 cut(s)	426
BslI	CCNNNNNNNGG	3 cut(s)	354, 373, 374
BsmAI	GTCTC	1 cut(s)	516
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	3 cut(s)	451, 589, 613
Bsp143I	GATC	3 cut(s)	54, 434, 595
Bsp1720I	GCTNAGC	1 cut(s)	158
Bsp19I	CCATGG	1 cut(s)	591
BspACI	CCGC	4 cut(s)	105, 274, 286, 564
BspANI	GGCC	3 cut(s)	451, 589, 613
BspCNI	CTCAG	1 cut(s)	526
BspFNI	CGCG	1 cut(s)	274
BspLI	GGNNCC	4 cut(s)	430, 568, 597, 612
BspPI	GGATC	3 cut(s)	49, 590, 603
BspT107I	GGYRCC	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	6 cut(s)	59, 60, 75, 174, 331, 591
BssMI	GATC	3 cut(s)	54, 434, 595
BssNI	GRCGYC	1 cut(s)	429
BssT1I	CCWWGG	3 cut(s)	75, 331, 591
Bst2UI	CCWGG	3 cut(s)	61, 176, 504
Bst6I	CTCTTC	1 cut(s)	366
BstACI	GRCGYC	1 cut(s)	429
BstBAI	YACGTR	1 cut(s)	607
BstC8I	GCNNGC	2 cut(s)	255, 320
BstDEI	CTNAG	2 cut(s)	158, 513
BstDSI	CCRYGG	1 cut(s)	591
BstF5I	GGATG	2 cut(s)	306, 343
BstFNI	CGCG	1 cut(s)	274
BstH2I	RGCGCY	2 cut(s)	432, 533
BstHHI	GCGC	4 cut(s)	240, 274, 431, 532
BstKTI	GATC	3 cut(s)	57, 437, 598
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	3 cut(s)	54, 434, 595
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 529
BstNI	CCWGG	3 cut(s)	61, 176, 504
BstSCI	CCNGG	3 cut(s)	59, 174, 502
BstUI	CGCG	1 cut(s)	274
BstX2I	RGATCY	3 cut(s)	54, 434, 595
BstXI	CCANNNNNNTGG	2 cut(s)	175, 439
BstYI	RGATCY	3 cut(s)	54, 434, 595
BsuRI	GGCC	3 cut(s)	451, 589, 613
BtgI	CCRYGG	1 cut(s)	591
BtsCI	GGATG	2 cut(s)	306, 343
BtsI	GCAGTG	1 cut(s)	248
BtsIMutI	CAGTG	2 cut(s)	86, 248
Cac8I	GCNNGC	2 cut(s)	255, 320
CaiI	CAGNNNCTG	1 cut(s)	520
CfoI	GCGC	4 cut(s)	240, 274, 431, 532
Cfr13I	GGNCC	3 cut(s)	517, 588, 611
Csp6I	GTAC	2 cut(s)	7, 232
CviAII	CATG	3 cut(s)	394, 555, 592
CviJI	RGCY	9 cut(s)	80, 157, 210, 322, 451, 473, 483, 589, 613
CviKI_1	RGCY	9 cut(s)	80, 157, 210, 322, 451, 473, 483, 589, 613
CviQI	GTAC	2 cut(s)	7, 232
DdeI	CTNAG	2 cut(s)	158, 513
DinI	GGCGCC	1 cut(s)	430
DpnI	GATC	3 cut(s)	56, 436, 597
DpnII	GATC	3 cut(s)	54, 434, 595
EaeI	YGGCCR	1 cut(s)	449
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	3 cut(s)	75, 331, 591
Eco47I	GGWCC	1 cut(s)	517
Eco72I	CACGTG	1 cut(s)	607
EcoO109I	RGGNCCY	2 cut(s)	517, 611
EcoRII	CCWGG	3 cut(s)	59, 174, 502
EcoT14I	CCWWGG	3 cut(s)	75, 331, 591
EgeI	GGCGCC	1 cut(s)	430
EheI	GGCGCC	1 cut(s)	430
ErhI	CCWWGG	3 cut(s)	75, 331, 591
FaeI	CATG	3 cut(s)	397, 558, 595
FaiI	YATR	4 cut(s)	395, 541, 556, 593
FatI	CATG	3 cut(s)	393, 554, 591
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	2 cut(s)	293, 330
Fsp4HI	GCNGC	1 cut(s)	275
FspBI	CTAG	3 cut(s)	405, 480, 561
GlaI	GCGC	4 cut(s)	239, 273, 430, 531
GluI	GCNGC	1 cut(s)	275
GsaI	CCCAGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	486
HaeII	RGCGCY	2 cut(s)	432, 533
HaeIII	GGCC	3 cut(s)	451, 589, 613
HapII	CCGG	1 cut(s)	426
HhaI	GCGC	4 cut(s)	240, 274, 431, 532
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	3 cut(s)	397, 558, 595
Hin6I	GCGC	4 cut(s)	238, 272, 429, 530
HinP1I	GCGC	4 cut(s)	238, 272, 429, 530
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	4 cut(s)	83, 96, 336, 499
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	2 cut(s)	157, 331
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	2 cut(s)	13, 149
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	362, 373, 558
HpyCH4IV	ACGT	2 cut(s)	9, 606
HpyCH4V	TGCA	1 cut(s)	303
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 529
HpyF3I	CTNAG	2 cut(s)	158, 513
HpySE526I	ACGT	2 cut(s)	9, 606
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	3 cut(s)	397, 558, 595
HspAI	GCGC	4 cut(s)	238, 272, 429, 530
KasI	GGCGCC	1 cut(s)	428
Kzo9I	GATC	3 cut(s)	54, 434, 595
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	3 cut(s)	405, 480, 561
MaeII	ACGT	2 cut(s)	9, 606
MaeIII	GTNAC	2 cut(s)	100, 464
MalI	GATC	3 cut(s)	56, 436, 597
MboI	GATC	3 cut(s)	54, 434, 595
MboII	GAAGA	2 cut(s)	193, 383
MflI	RGATCY	3 cut(s)	54, 434, 595
MlsI	TGGCCA	1 cut(s)	451
MluCI	AATT	2 cut(s)	29, 35
MluNI	TGGCCA	1 cut(s)	451
Mly113I	GGCGCC	1 cut(s)	429
MlyI	GAGTC	2 cut(s)	77, 493
MmeI	TCCRAC	2 cut(s)	149, 481
MnlI	CCTC	5 cut(s)	32, 190, 282, 367, 580
Mox20I	TGGCCA	1 cut(s)	451
MroXI	GAANNNNTTC	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	451
MseI	TTAA	1 cut(s)	616
MslI	CAYNNNNRTG	1 cut(s)	137
Msp20I	TGGCCA	1 cut(s)	451
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	3 cut(s)	61, 176, 504
Mva1269I	GAATGC	1 cut(s)	416
MvaI	CCWGG	3 cut(s)	61, 176, 504
MvnI	CGCG	1 cut(s)	274
MwoI	GCNNNNNNNGC	2 cut(s)	283, 529
NarI	GGCGCC	1 cut(s)	429
NcoI	CCATGG	1 cut(s)	591
NdeII	GATC	3 cut(s)	54, 434, 595
NlaIII	CATG	3 cut(s)	397, 558, 595
NlaIV	GGNNCC	4 cut(s)	430, 568, 597, 612
NmuCI	GTSAC	1 cut(s)	464
OliI	CACNNNNGTG	1 cut(s)	137
PasI	CCCWGGG	1 cut(s)	60
PctI	GAATGC	1 cut(s)	416
PdmI	GAANNNNTTC	1 cut(s)	185
PfeI	GAWTC	2 cut(s)	96, 336
PfoI	TCCNGGA	1 cut(s)	502
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	2 cut(s)	77, 493
PluTI	GGCGCC	1 cut(s)	432
PmaCI	CACGTG	1 cut(s)	607
PmlI	CACGTG	1 cut(s)	607
PpsI	GAGTC	2 cut(s)	77, 493
Ppu21I	YACGTR	1 cut(s)	607
PpuMI	RGGWCCY	1 cut(s)	517
Psp5II	RGGWCCY	1 cut(s)	517
Psp6I	CCWGG	3 cut(s)	59, 174, 502
PspCI	CACGTG	1 cut(s)	607
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	3 cut(s)	59, 174, 502
PspN4I	GGNNCC	4 cut(s)	430, 568, 597, 612
PspPI	GGNCC	3 cut(s)	517, 588, 611
PspPPI	RGGWCCY	1 cut(s)	517
PstNI	CAGNNNCTG	1 cut(s)	520
PsuI	RGATCY	3 cut(s)	54, 434, 595
PvuII	CAGCTG	1 cut(s)	210
RsaI	GTAC	2 cut(s)	8, 233
RsaNI	GTAC	2 cut(s)	7, 232
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	616
SatI	GCNGC	1 cut(s)	275
Sau3AI	GATC	3 cut(s)	54, 434, 595
Sau96I	GGNCC	3 cut(s)	517, 588, 611
SchI	GAGTC	2 cut(s)	77, 493
ScrFI	CCNGG	3 cut(s)	61, 176, 504
SfaNI	GCATC	1 cut(s)	171
SfoI	GGCGCC	1 cut(s)	430
SinI	GGWCC	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	29, 35
SsiI	CCGC	4 cut(s)	105, 274, 286, 564
SspDI	GGCGCC	1 cut(s)	428
SspMI	CTAG	3 cut(s)	405, 480, 561
StyD4I	CCNGG	3 cut(s)	59, 174, 502
StyI	CCWWGG	3 cut(s)	75, 331, 591
TaiI	ACGT	2 cut(s)	12, 609
TaqI	TCGA	1 cut(s)	491
TasI	AATT	2 cut(s)	29, 35
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	2 cut(s)	96, 336
Tru1I	TTAA	1 cut(s)	616
Tru9I	TTAA	1 cut(s)	616
TscAI	CASTG	2 cut(s)	93, 255
TseFI	GTSAC	1 cut(s)	464
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	1 cut(s)	234
TspGWI	ACGGA	2 cut(s)	143, 287
TspRI	CASTG	2 cut(s)	93, 255
VpaK11BI	GGWCC	1 cut(s)	517
XapI	RAATTY	2 cut(s)	29, 35
XmnI	GAANNNNTTC	1 cut(s)	185
XspI	CTAG	3 cut(s)	405, 480, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.