Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

44693466 .. 44695034

Gene Structure 1569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G029200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

ATGGTACAGGCCATCCTTAACCTGGCGGACCCCGAGTATAAAGTGGACGTCCAATGTCTCCAGGGCAAGTTAATAGCCCTTTCTCGATTCATCTCCAGACTCACTGATATGTGTGCCCCATTCTTCAAACTCCTCAAAACAACTCACAAGAAAATCATCAACTGGAACCCAGAGTGTCAGGCGGCGTTCCAGGGCCTGAAGGAATACCTAGCGACAGTCCCTCTCCTTTCTGTCCCTGTGCAAGGAGAGACACTGTTTATCTACCTAGCGGTCTCGGTATCGGCGGTAAGCTGCGCCATCGTCCGACGGGAGGGCCAAGACGAGCTCCCAGTGTTCTACGCCGGCAGAGGCATGAACGGAGCAGAAACAAGGTATCCTCCCTTGGAGCAACTAGCCCTCGCACTCATTGTTACCGCCAGGCGCCTCCGCCAATACTTCCAGGCTCACACGATCCATGTGGTAACCAATCAGCCGCTGAGGCAAGTGATGCAGAACCCTGAACACTCGGGGCGCCTCAGTAAGTGGGCCATTGAGCTCAGAGAGTTCGACATAGACTACAAGCCAAGAACCGCCATGAAGGGCCAGGCAGTGGCAGACTTCATCGCTGAACTCACCGAGCGTCAGCCAAAACTCGGTACCGAGACAGGGCCCGGAACAGAAATGGTAACCACTGAGGAAACAGCTCCACACTCGGATTGGAACCTGCATGTGGACGGCTCCGCTAGCGCCAAGGCCAGCGGCGCCGGAGTCATCTTAACAGGACCCGGGGGACTGAACACTGAATACGCGTTGACATTCAACTTCAAAGCTTCAAACAATATGGCGGAGTACGAAGCACTCATTGCCGGCCTACTCCTTGCCATCGACTCGGGTGCTGACAGCGTCAACATATTCAGCGACTCTCAATTAGTCGTTAACCAGGTCAACGACAGCTTCCAAGCCAAGGACCAGCAATTAGCGGCATATTTGGGGTACGTCAAAACGCTGCTTAAAAAGTTCAAATTTCACACCATCACACAAATCCCCAGGGAAAGGAACGCCAAAGCCGATTCACTGGCGAGACTGGCAACCGCCCAACCACATCAAAGTCTAGCGGACACAAGGGTGGAAAGCCTTGACAGACCAAGCATCACAAAAACCCTGGCGGAGATCTTCAGCATTGAGGTCAGTCCCAGCTGGATGGACGAGATCATTGCATACAAGCACAGCGGCACATTGCCGGAGGATAAGATCCAAGTGAGACAGCTCAAACGGAGAGCAACCCGCTATAACATCCAGAATGGCAAGCTTTACCGCCAGGGATTCACCCATCCCAACCTCCGCTGTCTCACCCCGGAGGAGGGAAAGGTTGTTCTAGGAGAGATACACGACGGAGAATGTGGAAACCACTCGGGCGCCAGATCCTTGGCCAACCGCACAATGCGACAGGGCTACTTCTGGCCCACACTTGGTGATGACGCCTGGCGGATTTCAAGGTCTTGCCACAAATGCCAACAGTTTGCAGATCTCCCACATGCACCGGCAGAACAGCTGTCAGTCATCATCGGCCCTTGGATTCACTCCACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

522

Amino Acids

58.12

Weight (kDa)

8.04

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	55 - 153	2.7e-15	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	84 - 182	5.9e-15	RNase H-like domain found in reverse transcriptase
RNase_H	PF00075	233 - 314	5.5e-07	RNase H
RVT_3	PF13456	237 - 355	5.8e-20	Reverse transcriptase-like
Integrase_H2C2	PF17921	449 - 500	5.7e-08	Integrase zinc binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	51
Acc36I	ACCTGC	1 cut(s)	711
Acc65I	GGTACC	1 cut(s)	635
AccB1I	GGYRCC	5 cut(s)	420, 510, 635, 740, 1394
AccB7I	CCANNNNNTGG	1 cut(s)	589
AccII	CGCG	1 cut(s)	788
AclWI	GGATC	3 cut(s)	445, 1225, 1395
AcoI	YGGCCR	1 cut(s)	1407
AcsI	RAATTY	1 cut(s)	1001
AcuI	CTGAAG	2 cut(s)	218, 1138
AcyI	GRCGYC	6 cut(s)	48, 421, 511, 741, 1395, 1458
AdeI	CACNNNGTG	1 cut(s)	1451
AfaI	GTAC	4 cut(s)	6, 637, 830, 974
AflIII	ACRYGT	1 cut(s)	786
AgsI	TTSAA	6 cut(s)	127, 799, 805, 813, 1000, 1473
AleI	CACNNNNGTG	1 cut(s)	1103
AloI	GAACNNNNNNTCC	2 cut(s)	1335, 1367
Alw21I	GWGCWC	2 cut(s)	327, 537
Alw26I	GTCTC	7 cut(s)	62, 242, 277, 635, 1054, 1234, 1331
AlwI	GGATC	3 cut(s)	445, 1225, 1395
AlwNI	CAGNNNCTG	2 cut(s)	196, 475
Ama87I	CYCGRG	5 cut(s)	32, 505, 764, 868, 1390
ApaI	GGGCCC	1 cut(s)	651
ApeKI	GCWGC	2 cut(s)	291, 985
ApoI	RAATTY	1 cut(s)	1001
Asp718I	GGTACC	1 cut(s)	635
AspLEI	GCGC	6 cut(s)	296, 423, 513, 728, 743, 1397
AsuC2I	CCSGG	4 cut(s)	651, 765, 766, 1334
AsuHPI	GGTGA	4 cut(s)	604, 1297, 1321, 1463
AsuNHI	GCTAGC	1 cut(s)	722
AvaI	CYCGRG	5 cut(s)	32, 505, 764, 868, 1390
AvaII	GGWCC	3 cut(s)	28, 761, 946
BaeGI	GKGCMC	2 cut(s)	118, 651
BalI	TGGCCA	1 cut(s)	1409
BanI	GGYRCC	5 cut(s)	420, 510, 635, 740, 1394
BanII	GRGCYC	3 cut(s)	327, 537, 651
Bbv12I	GWGCWC	2 cut(s)	327, 537
BbvCI	CCTCAGC	1 cut(s)	476
BbvI	GCAGC	2 cut(s)	278, 972
BccI	CCATC	6 cut(s)	20, 305, 869, 1019, 1174, 1317
BceAI	ACGGC	1 cut(s)	730
BcgI	CGANNNNNNTGC	4 cut(s)	854, 888, 1175, 1209
BciVI	GTATCC	1 cut(s)	384
BcnI	CCSGG	4 cut(s)	651, 765, 766, 1334
BcoDI	GTCTC	7 cut(s)	62, 242, 277, 635, 1054, 1234, 1331
BfaI	CTAG	6 cut(s)	209, 266, 392, 723, 1091, 1355
BfoI	RGCGCY	5 cut(s)	424, 514, 729, 744, 1398
BfuAI	ACCTGC	1 cut(s)	711
BfuI	GTATCC	1 cut(s)	384
BglI	GCCNNNNNGGC	1 cut(s)	478
BglII	AGATCT	2 cut(s)	1149, 1504
BisI	GCNGC	7 cut(s)	183, 292, 473, 739, 960, 986, 1210
BlsI	GCNGC	7 cut(s)	184, 293, 474, 740, 961, 987, 1211
Bme18I	GGWCC	3 cut(s)	28, 761, 946
BmeT110I	CYCGRG	5 cut(s)	32, 505, 764, 868, 1390
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	2 cut(s)	477, 1137
BmtI	GCTAGC	1 cut(s)	726
BmuI	ACTGGG	1 cut(s)	323
BpmI	CTGGAG	2 cut(s)	44, 79
Bpu10I	CCTNAGC	1 cut(s)	476
BpuMI	CCSGG	4 cut(s)	651, 765, 766, 1334
BsaAI	YACGTR	1 cut(s)	1566
BsaHI	GRCGYC	6 cut(s)	48, 421, 511, 741, 1395, 1458
BsaI	GGTCTC	1 cut(s)	277
Bse118I	RCCGGY	3 cut(s)	341, 845, 1519
Bse1I	ACTGG	4 cut(s)	167, 329, 1059, 1068
Bse3DI	GCAATG	3 cut(s)	840, 1191, 1214
BseGI	GGATG	4 cut(s)	12, 1185, 1272, 1309
BseMI	GCAATG	3 cut(s)	840, 1191, 1214
BseMII	CTCAG	4 cut(s)	467, 529, 550, 663
BseNI	ACTGG	4 cut(s)	167, 329, 1059, 1068
BseRI	GAGGAG	2 cut(s)	122, 1352
BseSI	GKGCMC	2 cut(s)	118, 651
BseXI	GCAGC	2 cut(s)	278, 972
BseYI	CCCAGC	1 cut(s)	1172
Bsh1236I	CGCG	1 cut(s)	788
BshNI	GGYRCC	5 cut(s)	420, 510, 635, 740, 1394
BsiHKAI	GWGCWC	2 cut(s)	327, 537
BsiHKCI	CYCGRG	5 cut(s)	32, 505, 764, 868, 1390
BsiSI	CCGG	8 cut(s)	342, 651, 744, 765, 846, 1220, 1334, 1520
BslFI	GGGAC	4 cut(s)	203, 218, 783, 1155
BsmAI	GTCTC	7 cut(s)	62, 242, 277, 635, 1054, 1234, 1331
BsmFI	GGGAC	4 cut(s)	203, 218, 783, 1155
Bso31I	GGTCTC	1 cut(s)	277
BsoBI	CYCGRG	5 cut(s)	32, 505, 764, 868, 1390
Bsp120I	GGGCCC	1 cut(s)	647
Bsp1286I	GDGCHC	4 cut(s)	118, 327, 537, 651
Bsp143I	GATC	6 cut(s)	450, 1149, 1188, 1230, 1400, 1504
BspCNI	CTCAG	4 cut(s)	468, 528, 549, 664
BspFNI	CGCG	1 cut(s)	788
BspMI	ACCTGC	1 cut(s)	711
BspOI	GCTAGC	1 cut(s)	726
BspPI	GGATC	3 cut(s)	445, 1225, 1395
BspT107I	GGYRCC	5 cut(s)	420, 510, 635, 740, 1394
BspTNI	GGTCTC	1 cut(s)	277
BsrDI	GCAATG	3 cut(s)	840, 1191, 1214
BsrFI	RCCGGY	3 cut(s)	341, 845, 1519
BsrI	ACTGG	4 cut(s)	167, 329, 1059, 1068
BssAI	RCCGGY	3 cut(s)	341, 845, 1519
BssMI	GATC	6 cut(s)	450, 1149, 1188, 1230, 1400, 1504
BssNI	GRCGYC	6 cut(s)	48, 421, 511, 741, 1395, 1458
BssT1I	CCWWGG	5 cut(s)	381, 729, 942, 1404, 1550
Bst4CI	ACNGT	3 cut(s)	217, 255, 1497
BstACI	GRCGYC	6 cut(s)	48, 421, 511, 741, 1395, 1458
BstAPI	GCANNNNNTGC	2 cut(s)	487, 842
BstBAI	YACGTR	1 cut(s)	1566
BstC8I	GCNNGC	5 cut(s)	343, 724, 736, 847, 1286
BstDEI	CTNAG	4 cut(s)	476, 515, 536, 672
BstEII	GGTNACC	2 cut(s)	460, 664
BstENI	CCTNNNNNAGG	1 cut(s)	240
BstF5I	GGATG	4 cut(s)	12, 1185, 1272, 1309
BstFNI	CGCG	1 cut(s)	788
BstH2I	RGCGCY	5 cut(s)	424, 514, 729, 744, 1398
BstHHI	GCGC	6 cut(s)	296, 423, 513, 728, 743, 1397
BstKTI	GATC	6 cut(s)	453, 1152, 1191, 1233, 1403, 1507
BstMAI	GTCTC	7 cut(s)	62, 242, 277, 635, 1054, 1234, 1331
BstMBI	GATC	6 cut(s)	450, 1149, 1188, 1230, 1400, 1504
BstMWI	GCNNNNNNNGC	7 cut(s)	478, 487, 723, 740, 842, 1064, 1488
BstNSI	RCATGY	2 cut(s)	710, 1517
BstPI	GGTNACC	2 cut(s)	460, 664
BstSLI	GKGCMC	2 cut(s)	118, 651
BstUI	CGCG	1 cut(s)	788
BstV1I	GCAGC	2 cut(s)	278, 972
BstX2I	RGATCY	4 cut(s)	1149, 1230, 1400, 1504
BstXI	CCANNNNNNTGG	2 cut(s)	1180, 1405
BstYI	RGATCY	4 cut(s)	1149, 1230, 1400, 1504
BsuI	GTATCC	1 cut(s)	384
BtgZI	GCGATG	1 cut(s)	586
BtsCI	GGATG	4 cut(s)	12, 1185, 1272, 1309
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	7 cut(s)	102, 251, 336, 594, 669, 777, 1052
BveI	ACCTGC	1 cut(s)	711
Cac8I	GCNNGC	5 cut(s)	343, 724, 736, 847, 1286
CaiI	CAGNNNCTG	2 cut(s)	196, 475
CfoI	GCGC	6 cut(s)	296, 423, 513, 728, 743, 1397
Cfr10I	RCCGGY	3 cut(s)	341, 845, 1519
Cfr9I	CCCGGG	1 cut(s)	764
CseI	GACGC	3 cut(s)	608, 871, 1466
CsiI	ACCWGGT	1 cut(s)	918
Csp6I	GTAC	4 cut(s)	5, 636, 829, 973
CviAII	CATG	5 cut(s)	352, 455, 574, 707, 1514
CviQI	GTAC	4 cut(s)	5, 636, 829, 973
DdeI	CTNAG	4 cut(s)	476, 515, 536, 672
DinI	GGCGCC	4 cut(s)	422, 512, 742, 1396
DpnI	GATC	6 cut(s)	452, 1151, 1190, 1232, 1402, 1506
DpnII	GATC	6 cut(s)	450, 1149, 1188, 1230, 1400, 1504
DraIII	CACNNNGTG	1 cut(s)	1451
EaeI	YGGCCR	1 cut(s)	1407
EciI	GGCGGA	5 cut(s)	41, 416, 839, 1160, 1480
Ecl136II	GAGCTC	2 cut(s)	325, 535
Eco130I	CCWWGG	5 cut(s)	381, 729, 942, 1404, 1550
Eco24I	GRGCYC	3 cut(s)	327, 537, 651
Eco31I	GGTCTC	1 cut(s)	277
Eco47I	GGWCC	3 cut(s)	28, 761, 946
Eco53kI	GAGCTC	2 cut(s)	325, 535
Eco57I	CTGAAG	2 cut(s)	218, 1138
Eco88I	CYCGRG	5 cut(s)	32, 505, 764, 868, 1390
Eco91I	GGTNACC	2 cut(s)	460, 664
EcoICRI	GAGCTC	2 cut(s)	325, 535
EcoNI	CCTNNNNNAGG	1 cut(s)	240
EcoO109I	RGGNCCY	3 cut(s)	193, 647, 761
EcoO65I	GGTNACC	2 cut(s)	460, 664
EcoT14I	CCWWGG	5 cut(s)	381, 729, 942, 1404, 1550
EcoT38I	GRGCYC	3 cut(s)	327, 537, 651
EgeI	GGCGCC	4 cut(s)	422, 512, 742, 1396
EheI	GGCGCC	4 cut(s)	422, 512, 742, 1396
ErhI	CCWWGG	5 cut(s)	381, 729, 942, 1404, 1550
FaeI	CATG	5 cut(s)	355, 458, 577, 710, 1517
FaqI	GGGAC	4 cut(s)	203, 218, 783, 1155
FatI	CATG	5 cut(s)	351, 454, 573, 706, 1513
FauI	CCCGC	1 cut(s)	1271
Fnu4HI	GCNGC	7 cut(s)	183, 292, 473, 739, 960, 986, 1210
FokI	GGATG	3 cut(s)	1192, 1259, 1296
FriOI	GRGCYC	3 cut(s)	327, 537, 651
Fsp4HI	GCNGC	7 cut(s)	183, 292, 473, 739, 960, 986, 1210
FspBI	CTAG	6 cut(s)	209, 266, 392, 723, 1091, 1355
GlaI	GCGC	6 cut(s)	295, 422, 512, 727, 742, 1396
GluI	GCNGC	7 cut(s)	183, 292, 473, 739, 960, 986, 1210
GsaI	CCCAGC	1 cut(s)	1176
GsuI	CTGGAG	2 cut(s)	44, 79
HaeII	RGCGCY	5 cut(s)	424, 514, 729, 744, 1398
HapII	CCGG	8 cut(s)	342, 651, 744, 765, 846, 1220, 1334, 1520
HgaI	GACGC	3 cut(s)	608, 871, 1466
HhaI	GCGC	6 cut(s)	296, 423, 513, 728, 743, 1397
Hin1I	GRCGYC	6 cut(s)	48, 421, 511, 741, 1395, 1458
Hin1II	CATG	5 cut(s)	355, 458, 577, 710, 1517
Hin6I	GCGC	6 cut(s)	294, 421, 511, 726, 741, 1395
HinP1I	GCGC	6 cut(s)	294, 421, 511, 726, 741, 1395
HincII	GTYRAC	4 cut(s)	792, 886, 916, 925
HindII	GTYRAC	4 cut(s)	792, 886, 916, 925
HindIII	AAGCTT	2 cut(s)	807, 1286
HinfI	GANTC	8 cut(s)	87, 99, 747, 866, 899, 1049, 1302, 1555
HpaI	GTTAAC	1 cut(s)	916
HpaII	CCGG	8 cut(s)	342, 651, 744, 765, 846, 1220, 1334, 1520
HphI	GGTGA	4 cut(s)	604, 1297, 1321, 1463
Hpy166II	GTNNAC	6 cut(s)	46, 712, 792, 886, 916, 925
Hpy188I	TCNGA	3 cut(s)	305, 539, 694
Hpy188III	TCNNGA	3 cut(s)	84, 96, 1276
Hpy8I	GTNNAC	6 cut(s)	46, 712, 792, 886, 916, 925
Hpy99I	CGWCG	2 cut(s)	309, 1373
HpyAV	CCTTC	2 cut(s)	193, 571
HpyCH4III	ACNGT	3 cut(s)	217, 255, 1497
HpyCH4IV	ACGT	3 cut(s)	48, 975, 1565
HpyCH4V	TGCA	6 cut(s)	241, 490, 706, 1196, 1502, 1517
HpyF10VI	GCNNNNNNNGC	7 cut(s)	478, 487, 723, 740, 842, 1064, 1488
HpyF3I	CTNAG	4 cut(s)	476, 515, 536, 672
HpySE526I	ACGT	3 cut(s)	48, 975, 1565
Hsp92I	GRCGYC	6 cut(s)	48, 421, 511, 741, 1395, 1458
Hsp92II	CATG	5 cut(s)	355, 458, 577, 710, 1517
HspAI	GCGC	6 cut(s)	294, 421, 511, 726, 741, 1395
KasI	GGCGCC	4 cut(s)	420, 510, 740, 1394
KpnI	GGTACC	1 cut(s)	639
KroI	GCCGGC	2 cut(s)	341, 845
KroNI	GCCGGC	2 cut(s)	343, 847
KspAI	GTTAAC	1 cut(s)	916
Kzo9I	GATC	6 cut(s)	450, 1149, 1188, 1230, 1400, 1504
LmnI	GCTCC	5 cut(s)	330, 359, 385, 688, 722
Lsp1109I	GCAGC	2 cut(s)	278, 972
LweI	GCATC	2 cut(s)	477, 1137
MabI	ACCWGGT	1 cut(s)	918
MaeI	CTAG	6 cut(s)	209, 266, 392, 723, 1091, 1355
MaeII	ACGT	3 cut(s)	48, 975, 1565
MaeIII	GTNAC	3 cut(s)	409, 460, 664
MalI	GATC	6 cut(s)	452, 1151, 1190, 1232, 1402, 1506
MboI	GATC	6 cut(s)	450, 1149, 1188, 1230, 1400, 1504
MboII	GAAGA	2 cut(s)	115, 1144
MflI	RGATCY	4 cut(s)	1149, 1230, 1400, 1504
MhlI	GDGCHC	4 cut(s)	118, 327, 537, 651
MlsI	TGGCCA	1 cut(s)	1409
MluCI	AATT	3 cut(s)	905, 953, 1001
MluI	ACGCGT	1 cut(s)	786
MluNI	TGGCCA	1 cut(s)	1409
Mly113I	GGCGCC	4 cut(s)	421, 511, 741, 1395
MlyI	GAGTC	4 cut(s)	93, 756, 860, 893
MmeI	TCCRAC	1 cut(s)	328
Mox20I	TGGCCA	1 cut(s)	1409
MroNI	GCCGGC	2 cut(s)	341, 845
MscI	TGGCCA	1 cut(s)	1409
MseI	TTAA	5 cut(s)	18, 71, 755, 915, 990
MslI	CAYNNNNRTG	2 cut(s)	107, 1103
Msp20I	TGGCCA	1 cut(s)	1409
MspA1I	CMGCKG	6 cut(s)	475, 738, 1176, 1209, 1323, 1531
MspI	CCGG	8 cut(s)	342, 651, 744, 765, 846, 1220, 1334, 1520
MvnI	CGCG	1 cut(s)	788
MwoI	GCNNNNNNNGC	7 cut(s)	478, 487, 723, 740, 842, 1064, 1488
NaeI	GCCGGC	2 cut(s)	343, 847
NarI	GGCGCC	4 cut(s)	421, 511, 741, 1395
NciI	CCSGG	4 cut(s)	651, 765, 766, 1334
NdeII	GATC	6 cut(s)	450, 1149, 1188, 1230, 1400, 1504
NgoMIV	GCCGGC	2 cut(s)	341, 845
NheI	GCTAGC	1 cut(s)	722
NlaIII	CATG	5 cut(s)	355, 458, 577, 710, 1517
NspI	RCATGY	2 cut(s)	710, 1517
OliI	CACNNNNGTG	1 cut(s)	1103
PasI	CCCWGGG	1 cut(s)	1026
PcsI	WCGNNNNNNNCGW	1 cut(s)	1044
PdiI	GCCGGC	2 cut(s)	343, 847
PfeI	GAWTC	4 cut(s)	87, 1049, 1302, 1555
PflFI	GACNNNGTC	1 cut(s)	881
PflMI	CCANNNNNTGG	1 cut(s)	589
PkrI	GCNGC	7 cut(s)	184, 293, 474, 740, 961, 987, 1211
PleI	GAGTC	4 cut(s)	93, 755, 860, 893
PluTI	GGCGCC	4 cut(s)	424, 514, 744, 1398
PpsI	GAGTC	4 cut(s)	93, 755, 860, 893
Ppu21I	YACGTR	1 cut(s)	1566
PpuMI	RGGWCCY	1 cut(s)	761
Psp124BI	GAGCTC	2 cut(s)	327, 537
Psp5II	RGGWCCY	1 cut(s)	761
PspEI	GGTNACC	2 cut(s)	460, 664
PspFI	CCCAGC	1 cut(s)	1172
PspOMI	GGGCCC	1 cut(s)	647
PspPPI	RGGWCCY	1 cut(s)	761
PsrI	GAACNNNNNNTAC	2 cut(s)	767, 799
PstNI	CAGNNNCTG	2 cut(s)	196, 475
PsuI	RGATCY	4 cut(s)	1149, 1230, 1400, 1504
PsyI	GACNNNGTC	1 cut(s)	881
PvuII	CAGCTG	2 cut(s)	1176, 1531
RsaI	GTAC	4 cut(s)	6, 637, 830, 974
RsaNI	GTAC	4 cut(s)	5, 636, 829, 973
RseI	CAYNNNNRTG	2 cut(s)	107, 1103
SacI	GAGCTC	2 cut(s)	327, 537
SaqAI	TTAA	5 cut(s)	18, 71, 755, 915, 990
SatI	GCNGC	7 cut(s)	183, 292, 473, 739, 960, 986, 1210
Sau3AI	GATC	6 cut(s)	450, 1149, 1188, 1230, 1400, 1504
SchI	GAGTC	4 cut(s)	93, 756, 860, 893
SduI	GDGCHC	4 cut(s)	118, 327, 537, 651
SexAI	ACCWGGT	1 cut(s)	918
SfaNI	GCATC	2 cut(s)	477, 1137
SfoI	GGCGCC	4 cut(s)	422, 512, 742, 1396
SinI	GGWCC	3 cut(s)	28, 761, 946
SmaI	CCCGGG	1 cut(s)	766
SmiMI	CAYNNNNRTG	2 cut(s)	107, 1103
Sse9I	AATT	3 cut(s)	905, 953, 1001
SspDI	GGCGCC	4 cut(s)	420, 510, 740, 1394
SspMI	CTAG	6 cut(s)	209, 266, 392, 723, 1091, 1355
SstI	GAGCTC	2 cut(s)	327, 537
StyI	CCWWGG	5 cut(s)	381, 729, 942, 1404, 1550
TaaI	ACNGT	3 cut(s)	217, 255, 1497
TaiI	ACGT	3 cut(s)	51, 978, 1568
TaqI	TCGA	3 cut(s)	85, 546, 864
TasI	AATT	3 cut(s)	905, 953, 1001
TauI	GCSGC	5 cut(s)	185, 475, 741, 962, 1212
TfiI	GAWTC	4 cut(s)	87, 1049, 1302, 1555
Tru1I	TTAA	5 cut(s)	18, 71, 755, 915, 990
Tru9I	TTAA	5 cut(s)	18, 71, 755, 915, 990
TscAI	CASTG	7 cut(s)	109, 258, 336, 594, 676, 784, 1059
TseI	GCWGC	2 cut(s)	291, 985
TspDTI	ATGAA	4 cut(s)	79, 368, 589, 590
TspGWI	ACGGA	3 cut(s)	372, 1267, 1386
TspMI	CCCGGG	1 cut(s)	764
TspRI	CASTG	7 cut(s)	109, 258, 336, 594, 676, 784, 1059
Tth111I	GACNNNGTC	1 cut(s)	881
Van91I	CCANNNNNTGG	1 cut(s)	589
VpaK11BI	GGWCC	3 cut(s)	28, 761, 946
XagI	CCTNNNNNAGG	1 cut(s)	240
XapI	RAATTY	1 cut(s)	1001
XceI	RCATGY	2 cut(s)	710, 1517
XcmI	CCANNNNNNNNNTGG	2 cut(s)	19, 693
XmaI	CCCGGG	1 cut(s)	764
XspI	CTAG	6 cut(s)	209, 266, 392, 723, 1091, 1355
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.