Rh7DG403200

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000250
Physical Location & Seq
Reverse (-)
55630261 .. 55649732
19472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG403200.1

Sequence Viewer

Length: 507 bp
ATGCATGTCGATGGCGCATCGAATTTCTCTGGCGCAGGAGCCAGCATTGTCCTCCAAAGTTCTGAGGGTCTTCAGATTGAGAGCGTCGTACATCTCGCTTTCCCAGCGTTGAACAATGTGGCAGAGTATGAAGCGTTAGTCACAGGTTTAAACATTGCGAAGAAATTGTGCATCCAACGATTACAAGTATACTCAGACTCCCAACCAGTTATCGGATTCTCTAACGAGGAATACACAGCAAAAGATGAGCGGATGACCAAGTATAGTAATTTGGTGCGAGAGTTGATGCGGGGATTTGAGCAGTTGTCGCTAGTAAAAGTGTCCCGTGAGAAGAACTCCCGCACGGACGAATTAGCGAAAGCAGCGTTAGGCTACACAAATGCCATTAACCTCGTCAAAATTGAAGTACTTGAAGCCCCAGGCACCGATAGGGAGCAGACTACGATGGCCTTGATTCTCAAGCCGTCCAATGGGGTGAGATGGGAAGACGATGGCAATGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 rve

Protein Analysis

168

Amino Acids

18.51

Weight (kDa)

5.14

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 11 - 122 2.2e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica Prupe.6G166700_v2.0.a1
pyrus_communis pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis RchiOBHm_Chr5g0018261
rosa_laevigata RLG00000022447
rosa_multiflora Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa Rorug02G0381000
rosa_samantha Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 422
AccBSI CCGCTC 1 cut(s) 250
AccI GTMKAC 1 cut(s) 189
AciI CCGC 3 cut(s) 250, 289, 340
AcsI RAATTY 1 cut(s) 22
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 2 cut(s) 90, 408
AfiI CCNNNNNNNGG 2 cut(s) 212, 470
AgsI TTSAA 3 cut(s) 112, 404, 413
AjnI CCWGG 1 cut(s) 418
AoxI GGCC 1 cut(s) 447
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 1 cut(s) 22
AspLEI GCGC 2 cut(s) 17, 35
AsuHPI GGTGA 1 cut(s) 487
BanI GGYRCC 1 cut(s) 422
BbsI GAAGAC 2 cut(s) 62, 492
BbvI GCAGC 1 cut(s) 374
BccI CCATC 4 cut(s) 5, 439, 474, 485
BceAI ACGGC 1 cut(s) 448
BciT130I CCWGG 1 cut(s) 420
BfaI CTAG 1 cut(s) 311
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
BmcAI AGTACT 1 cut(s) 408
Bme1390I CCNGG 1 cut(s) 420
BmiI GGNNCC 2 cut(s) 40, 424
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 3 cut(s) 26, 180, 276
BpiI GAAGAC 2 cut(s) 62, 492
BplI GAGNNNNNCTC 2 cut(s) 320, 352
BpuEI CTTGAG 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 418
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 470
Bse1I ACTGG 1 cut(s) 206
Bse3DI GCAATG 2 cut(s) 153, 502
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 418
BseGI GGATG 2 cut(s) 171, 258
BseLI CCNNNNNNNGG 2 cut(s) 212, 470
BseMI GCAATG 2 cut(s) 153, 502
BseMII CTCAG 2 cut(s) 54, 207
BseNI ACTGG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 374
BseYI CCCAGC 1 cut(s) 103
BshFI GGCC 1 cut(s) 449
BshNI GGYRCC 1 cut(s) 422
BslFI GGGAC 1 cut(s) 307
BslI CCNNNNNNNGG 2 cut(s) 212, 470
BsmFI GGGAC 1 cut(s) 307
BsnI GGCC 1 cut(s) 449
BspACI CCGC 3 cut(s) 250, 289, 340
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 2 cut(s) 55, 206
BspLI GGNNCC 2 cut(s) 40, 424
BspT107I GGYRCC 1 cut(s) 422
BsrBI CCGCTC 1 cut(s) 250
BsrDI GCAATG 2 cut(s) 153, 502
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 418
BssNAI GTATAC 1 cut(s) 190
Bst1107I GTATAC 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 420
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 63, 193
BstF5I GGATG 2 cut(s) 171, 258
BstHHI GCGC 2 cut(s) 17, 35
BstMWI GCNNNNNNNGC 3 cut(s) 104, 307, 362
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 418
BstV1I GCAGC 1 cut(s) 374
BstV2I GAAGAC 2 cut(s) 62, 492
BstZ17I GTATAC 1 cut(s) 190
BsuRI GGCC 1 cut(s) 449
BtsCI GGATG 2 cut(s) 171, 258
Cac8I GCNNGC 1 cut(s) 43
CfoI GCGC 2 cut(s) 17, 35
CseI GACGC 1 cut(s) 73
Csp6I GTAC 2 cut(s) 89, 407
CviAII CATG 1 cut(s) 5
CviJI RGCY 5 cut(s) 41, 372, 416, 449, 463
CviKI_1 RGCY 5 cut(s) 41, 372, 416, 449, 463
CviQI GTAC 2 cut(s) 89, 407
DdeI CTNAG 2 cut(s) 63, 193
DraI TTTAAA 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 418
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 8
FaiI YATR 4 cut(s) 6, 129, 190, 264
FaqI GGGAC 1 cut(s) 307
FatI CATG 1 cut(s) 4
FauI CCCGC 2 cut(s) 282, 347
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 2 cut(s) 158, 265
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 1 cut(s) 311
GlaI GCGC 2 cut(s) 16, 34
GluI GCNGC 1 cut(s) 363
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 1 cut(s) 449
HgaI GACGC 1 cut(s) 73
HhaI GCGC 2 cut(s) 17, 35
Hin1II CATG 1 cut(s) 8
Hin6I GCGC 2 cut(s) 15, 33
HinP1I GCGC 2 cut(s) 15, 33
HinfI GANTC 3 cut(s) 197, 216, 454
HphI GGTGA 1 cut(s) 487
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 4 cut(s) 64, 75, 196, 215
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 1 cut(s) 89
HpyCH4V TGCA 2 cut(s) 4, 171
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 307, 362
HpyF3I CTNAG 2 cut(s) 63, 193
Hsp92II CATG 1 cut(s) 8
HspAI GCGC 2 cut(s) 15, 33
LmnI GCTCC 2 cut(s) 38, 433
LpnPI CCDG 8 cut(s) 15, 21, 55, 117, 129, 219, 405, 432
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 3 cut(s) 26, 180, 276
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 139
MbiI CCGCTC 1 cut(s) 250
MboII GAAGA 4 cut(s) 62, 172, 343, 497
MluCI AATT 5 cut(s) 22, 164, 268, 350, 399
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 4 cut(s) 58, 62, 220, 401
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 149, 387
MslI CAYNNNNRTG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 420
MssI GTTTAAAC 1 cut(s) 150
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 3 cut(s) 104, 307, 362
NlaIII CATG 1 cut(s) 8
NlaIV GGNNCC 2 cut(s) 40, 424
NmuCI GTSAC 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PfeI GAWTC 2 cut(s) 216, 454
PkrI GCNGC 1 cut(s) 364
PleI GAGTC 1 cut(s) 191
PmeI GTTTAAAC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 418
PspFI CCCAGC 1 cut(s) 103
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 2 cut(s) 40, 424
RsaI GTAC 2 cut(s) 90, 408
RsaNI GTAC 2 cut(s) 89, 407
RseI CAYNNNNRTG 1 cut(s) 9
SaqAI TTAA 2 cut(s) 149, 387
SatI GCNGC 1 cut(s) 363
ScaI AGTACT 1 cut(s) 408
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 420
SetI ASST 2 cut(s) 148, 393
SfaNI GCATC 3 cut(s) 26, 180, 276
SmiMI CAYNNNNRTG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 5 cut(s) 22, 164, 268, 350, 399
SsiI CCGC 3 cut(s) 250, 289, 340
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 418
TaqI TCGA 2 cut(s) 9, 20
TasI AATT 5 cut(s) 22, 164, 268, 350, 399
TatI WGTACW 1 cut(s) 406
TfiI GAWTC 2 cut(s) 216, 454
Tru1I TTAA 2 cut(s) 149, 387
Tru9I TTAA 2 cut(s) 149, 387
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 144
TspGWI ACGGA 1 cut(s) 359
XapI RAATTY 1 cut(s) 22
XceI RCATGY 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 1 cut(s) 311
ZrmI AGTACT 1 cut(s) 408
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.