Uncharacterized protein K02A2.6-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RT_RNaseH_2 | PF17919 | 2 - 70 | 4.6e-10 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 3 - 99 | 2.4e-18 | RNase H-like domain found in reverse transcriptase |
| Integrase_H2C2 | PF17921 | 317 - 372 | 5.6e-07 | Integrase zinc binding domain |
| rve | PF00665 | 394 - 487 | 7.7e-09 | Integrase core domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 4 cut(s) | 223, 252, 572, 1332 |
| Acc65I | GGTACC | 3 cut(s) | 123, 1379, 1697 |
| AccB1I | GGYRCC | 4 cut(s) | 123, 1132, 1379, 1697 |
| AccI | GTMKAC | 4 cut(s) | 513, 822, 1714, 1860 |
| AciI | CCGC | 6 cut(s) | 20, 558, 773, 1136, 1929, 1996 |
| AclWI | GGATC | 6 cut(s) | 786, 1429, 1639, 1685, 1877, 1890 |
| AcoI | YGGCCR | 2 cut(s) | 1055, 1169 |
| AcsI | RAATTY | 1 cut(s) | 530 |
| AcuI | CTGAAG | 2 cut(s) | 572, 956 |
| AcyI | GRCGYC | 1 cut(s) | 1350 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 425, 604, 707, 835, 956, 1879 |
| AgsI | TTSAA | 6 cut(s) | 137, 541, 811, 1231, 1655, 1916 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1470 |
| AhlI | ACTAGT | 1 cut(s) | 470 |
| AjnI | CCWGG | 8 cut(s) | 119, 156, 333, 424, 1071, 1353, 1889, 1967 |
| AleI | CACNNNNGTG | 2 cut(s) | 987, 1217 |
| Alw21I | GWGCWC | 1 cut(s) | 44 |
| Alw26I | GTCTC | 2 cut(s) | 245, 1601 |
| AlwI | GGATC | 6 cut(s) | 786, 1429, 1639, 1685, 1877, 1890 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1423, 1993 |
| Ama87I | CYCGRG | 3 cut(s) | 597, 1736, 1872 |
| ApeKI | GCWGC | 2 cut(s) | 338, 1547 |
| ApoI | RAATTY | 1 cut(s) | 530 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1654, 1686 |
| Asp718I | GGTACC | 3 cut(s) | 123, 1379, 1697 |
| AspLEI | GCGC | 1 cut(s) | 1992 |
| AspS9I | GGNCC | 8 cut(s) | 276, 331, 711, 737, 799, 1581, 1898, 1925 |
| AsuHPI | GGTGA | 5 cut(s) | 196, 212, 384, 1288, 1448 |
| AvaI | CYCGRG | 3 cut(s) | 597, 1736, 1872 |
| AvaII | GGWCC | 3 cut(s) | 737, 799, 1581 |
| AxyI | CCTNAGG | 1 cut(s) | 1037 |
| BaeGI | GKGCMC | 2 cut(s) | 1135, 1430 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 1350, 1363, 1383, 1396 |
| BalI | TGGCCA | 1 cut(s) | 1057 |
| BamHI | GGATCC | 1 cut(s) | 1882 |
| BanI | GGYRCC | 4 cut(s) | 123, 1132, 1379, 1697 |
| BanII | GRGCYC | 3 cut(s) | 44, 1015, 1872 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1319, 1351, 1844, 1876 |
| BbsI | GAAGAC | 2 cut(s) | 578, 865 |
| Bbv12I | GWGCWC | 1 cut(s) | 44 |
| BbvI | GCAGC | 2 cut(s) | 350, 1534 |
| BccI | CCATC | 8 cut(s) | 287, 443, 790, 1148, 1160, 1247, 1301, 1894 |
| BceAI | ACGGC | 4 cut(s) | 841, 1156, 1232, 1602 |
| BciT130I | CCWGG | 8 cut(s) | 121, 158, 335, 426, 1073, 1355, 1891, 1969 |
| BciVI | GTATCC | 2 cut(s) | 494, 1351 |
| BcoDI | GTCTC | 2 cut(s) | 245, 1601 |
| BcuI | ACTAGT | 1 cut(s) | 470 |
| BfaI | CTAG | 5 cut(s) | 149, 386, 471, 741, 830 |
| BfmI | CTRYAG | 2 cut(s) | 863, 1339 |
| BfoI | RGCGCY | 1 cut(s) | 1993 |
| BfuAI | ACCTGC | 4 cut(s) | 223, 252, 572, 1332 |
| BfuI | GTATCC | 2 cut(s) | 494, 1351 |
| BisI | GCNGC | 4 cut(s) | 21, 339, 558, 1548 |
| BlsI | GCNGC | 4 cut(s) | 22, 340, 559, 1549 |
| BmcAI | AGTACT | 1 cut(s) | 1644 |
| Bme18I | GGWCC | 3 cut(s) | 737, 799, 1581 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1470 |
| BmeT110I | CYCGRG | 3 cut(s) | 597, 1736, 1872 |
| BmgT120I | GGNCC | 8 cut(s) | 276, 331, 711, 737, 799, 1581, 1898, 1925 |
| BmrI | ACTGGG | 6 cut(s) | 74, 404, 614, 1378, 1433, 1852 |
| BmsI | GCATC | 7 cut(s) | 32, 554, 655, 692, 1714, 1795, 1981 |
| BmuI | ACTGGG | 6 cut(s) | 74, 404, 614, 1378, 1433, 1852 |
| BpiI | GAAGAC | 2 cut(s) | 578, 865 |
| BpmI | CTGGAG | 1 cut(s) | 1623 |
| Bpu10I | CCTNAGC | 1 cut(s) | 869 |
| BsaHI | GRCGYC | 1 cut(s) | 1350 |
| BsaI | GGTCTC | 1 cut(s) | 1601 |
| BsaWI | WCCGGW | 1 cut(s) | 949 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 138, 168, 1553, 1583 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 425, 604, 707, 835, 956, 1879 |
| Bse118I | RCCGGY | 1 cut(s) | 479 |
| Bse21I | CCTNAGG | 1 cut(s) | 1037 |
| Bse3DI | GCAATG | 1 cut(s) | 919 |
| BseBI | CCWGG | 8 cut(s) | 121, 158, 335, 426, 1073, 1355, 1891, 1969 |
| BseGI | GGATG | 7 cut(s) | 455, 545, 801, 844, 1152, 1886, 1972 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 425, 604, 707, 835, 956, 1879 |
| BseMI | GCAATG | 1 cut(s) | 919 |
| BseMII | CTCAG | 3 cut(s) | 57, 190, 1719 |
| BseSI | GKGCMC | 2 cut(s) | 1135, 1430 |
| BseXI | GCAGC | 2 cut(s) | 350, 1534 |
| BseYI | CCCAGC | 1 cut(s) | 1986 |
| BsgI | GTGCAG | 1 cut(s) | 132 |
| BshNI | GGYRCC | 4 cut(s) | 123, 1132, 1379, 1697 |
| BsiHKAI | GWGCWC | 1 cut(s) | 44 |
| BsiHKCI | CYCGRG | 3 cut(s) | 597, 1736, 1872 |
| BslFI | GGGAC | 6 cut(s) | 1236, 1656, 1804, 1853, 1890, 1961 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 425, 604, 707, 835, 956, 1879 |
| BsmAI | GTCTC | 2 cut(s) | 245, 1601 |
| BsmFI | GGGAC | 6 cut(s) | 1236, 1656, 1804, 1853, 1890, 1961 |
| Bso31I | GGTCTC | 1 cut(s) | 1601 |
| BsoBI | CYCGRG | 3 cut(s) | 597, 1736, 1872 |
| Bsp1286I | GDGCHC | 5 cut(s) | 44, 1015, 1135, 1430, 1872 |
| Bsp1407I | TGTACA | 1 cut(s) | 906 |
| Bsp19I | CCATGG | 2 cut(s) | 1166, 1976 |
| BspACI | CCGC | 6 cut(s) | 20, 558, 773, 1136, 1929, 1996 |
| BspCNI | CTCAG | 3 cut(s) | 56, 189, 1718 |
| BspHI | TCATGA | 2 cut(s) | 891, 1848 |
| BspMAI | CTGCAG | 1 cut(s) | 1343 |
| BspMI | ACCTGC | 4 cut(s) | 223, 252, 572, 1332 |
| BspPI | GGATC | 6 cut(s) | 786, 1429, 1639, 1685, 1877, 1890 |
| BspT107I | GGYRCC | 4 cut(s) | 123, 1132, 1379, 1697 |
| BspTNI | GGTCTC | 1 cut(s) | 1601 |
| BsrDI | GCAATG | 1 cut(s) | 919 |
| BsrFI | RCCGGY | 1 cut(s) | 479 |
| BsrGI | TGTACA | 1 cut(s) | 906 |
| BssAI | RCCGGY | 1 cut(s) | 479 |
| BssNAI | GTATAC | 1 cut(s) | 514 |
| BssNI | GRCGYC | 1 cut(s) | 1350 |
| BssT1I | CCWWGG | 5 cut(s) | 1127, 1166, 1533, 1809, 1976 |
| Bst1107I | GTATAC | 1 cut(s) | 514 |
| Bst2UI | CCWGG | 8 cut(s) | 121, 158, 335, 426, 1073, 1355, 1891, 1969 |
| Bst4CI | ACNGT | 7 cut(s) | 208, 757, 906, 1227, 1366, 1472, 1818 |
| Bst6I | CTCTTC | 2 cut(s) | 907, 1741 |
| BstACI | GRCGYC | 1 cut(s) | 1350 |
| BstAUI | TGTACA | 1 cut(s) | 906 |
| BstC8I | GCNNGC | 3 cut(s) | 681, 1068, 1994 |
| BstDEI | CTNAG | 8 cut(s) | 43, 176, 717, 750, 869, 1037, 1431, 1705 |
| BstDSI | CCRYGG | 5 cut(s) | 1166, 1248, 1299, 1584, 1976 |
| BstEII | GGTNACC | 1 cut(s) | 998 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 423 |
| BstF5I | GGATG | 7 cut(s) | 455, 545, 801, 844, 1152, 1886, 1972 |
| BstH2I | RGCGCY | 1 cut(s) | 1993 |
| BstHHI | GCGC | 1 cut(s) | 1992 |
| BstMAI | GTCTC | 2 cut(s) | 245, 1601 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 578, 680, 1063, 1104, 1244, 1347, 1451, 1595 |
| BstNI | CCWGG | 8 cut(s) | 121, 158, 335, 426, 1073, 1355, 1891, 1969 |
| BstNSI | RCATGY | 1 cut(s) | 1765 |
| BstPI | GGTNACC | 1 cut(s) | 998 |
| BstSFI | CTRYAG | 2 cut(s) | 863, 1339 |
| BstSLI | GKGCMC | 2 cut(s) | 1135, 1430 |
| BstV1I | GCAGC | 2 cut(s) | 350, 1534 |
| BstV2I | GAAGAC | 2 cut(s) | 578, 865 |
| BstX2I | RGATCY | 2 cut(s) | 1434, 1882 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 432, 1219 |
| BstYI | RGATCY | 2 cut(s) | 1434, 1882 |
| BstZ17I | GTATAC | 1 cut(s) | 514 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1037 |
| BsuI | GTATCC | 2 cut(s) | 494, 1351 |
| BtgI | CCRYGG | 5 cut(s) | 1166, 1248, 1299, 1584, 1976 |
| BtgZI | GCGATG | 2 cut(s) | 1126, 1273 |
| BtsCI | GGATG | 7 cut(s) | 455, 545, 801, 844, 1152, 1886, 1972 |
| BtsI | GCAGTG | 1 cut(s) | 1224 |
| BtsIMutI | CAGTG | 5 cut(s) | 87, 105, 1187, 1224, 1599 |
| BveI | ACCTGC | 4 cut(s) | 223, 252, 572, 1332 |
| Cac8I | GCNNGC | 3 cut(s) | 681, 1068, 1994 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1423, 1993 |
| CciI | TCATGA | 2 cut(s) | 891, 1848 |
| CfoI | GCGC | 1 cut(s) | 1992 |
| Cfr10I | RCCGGY | 1 cut(s) | 479 |
| Cfr13I | GGNCC | 8 cut(s) | 276, 331, 711, 737, 799, 1581, 1898, 1925 |
| Cfr9I | CCCGGG | 2 cut(s) | 597, 1872 |
| CseI | GACGC | 1 cut(s) | 1339 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1247, 1282 |
| DdeI | CTNAG | 8 cut(s) | 43, 176, 717, 750, 869, 1037, 1431, 1705 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1470 |
| EaeI | YGGCCR | 2 cut(s) | 1055, 1169 |
| Eam1104I | CTCTTC | 2 cut(s) | 907, 1741 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1470 |
| EarI | CTCTTC | 2 cut(s) | 907, 1741 |
| Ecl136II | GAGCTC | 1 cut(s) | 42 |
| Eco130I | CCWWGG | 5 cut(s) | 1127, 1166, 1533, 1809, 1976 |
| Eco24I | GRGCYC | 3 cut(s) | 44, 1015, 1872 |
| Eco31I | GGTCTC | 1 cut(s) | 1601 |
| Eco32I | GATATC | 1 cut(s) | 301 |
| Eco47I | GGWCC | 3 cut(s) | 737, 799, 1581 |
| Eco53kI | GAGCTC | 1 cut(s) | 42 |
| Eco57I | CTGAAG | 2 cut(s) | 572, 956 |
| Eco81I | CCTNAGG | 1 cut(s) | 1037 |
| Eco88I | CYCGRG | 3 cut(s) | 597, 1736, 1872 |
| Eco91I | GGTNACC | 1 cut(s) | 998 |
| EcoICRI | GAGCTC | 1 cut(s) | 42 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 423 |
| EcoO109I | RGGNCCY | 3 cut(s) | 737, 1898, 1925 |
| EcoO65I | GGTNACC | 1 cut(s) | 998 |
| EcoRII | CCWGG | 8 cut(s) | 119, 156, 333, 424, 1071, 1353, 1889, 1967 |
| EcoRV | GATATC | 1 cut(s) | 301 |
| EcoT14I | CCWWGG | 5 cut(s) | 1127, 1166, 1533, 1809, 1976 |
| EcoT38I | GRGCYC | 3 cut(s) | 44, 1015, 1872 |
| ErhI | CCWWGG | 5 cut(s) | 1127, 1166, 1533, 1809, 1976 |
| FaqI | GGGAC | 6 cut(s) | 1236, 1656, 1804, 1853, 1890, 1961 |
| FauI | CCCGC | 1 cut(s) | 1936 |
| FblI | GTMKAC | 4 cut(s) | 513, 822, 1714, 1860 |
| Fnu4HI | GCNGC | 4 cut(s) | 21, 339, 558, 1548 |
| FokI | GGATG | 7 cut(s) | 442, 532, 808, 851, 1139, 1873, 1959 |
| FriOI | GRGCYC | 3 cut(s) | 44, 1015, 1872 |
| Fsp4HI | GCNGC | 4 cut(s) | 21, 339, 558, 1548 |
| FspBI | CTAG | 5 cut(s) | 149, 386, 471, 741, 830 |
| GlaI | GCGC | 1 cut(s) | 1991 |
| GluI | GCNGC | 4 cut(s) | 21, 339, 558, 1548 |
| GsaI | CCCAGC | 1 cut(s) | 1990 |
| GsuI | CTGGAG | 1 cut(s) | 1623 |
| HaeII | RGCGCY | 1 cut(s) | 1993 |
| HgaI | GACGC | 1 cut(s) | 1339 |
| HhaI | GCGC | 1 cut(s) | 1992 |
| Hin1I | GRCGYC | 1 cut(s) | 1350 |
| Hin6I | GCGC | 1 cut(s) | 1990 |
| HinP1I | GCGC | 1 cut(s) | 1990 |
| HincII | GTYRAC | 2 cut(s) | 823, 1489 |
| HindII | GTYRAC | 2 cut(s) | 823, 1489 |
| HindIII | AAGCTT | 2 cut(s) | 1315, 1520 |
| HinfI | GANTC | 6 cut(s) | 62, 116, 359, 389, 1669, 1691 |
| HphI | GGTGA | 5 cut(s) | 196, 212, 384, 1288, 1448 |
| Hpy188I | TCNGA | 8 cut(s) | 51, 67, 179, 358, 591, 763, 1636, 1708 |
| Hpy188III | TCNNGA | 5 cut(s) | 892, 1501, 1579, 1666, 1849 |
| Hpy99I | CGWCG | 1 cut(s) | 827 |
| HpyAV | CCTTC | 7 cut(s) | 52, 547, 711, 950, 967, 1703, 1779 |
| HpyCH4III | ACNGT | 7 cut(s) | 208, 757, 906, 1227, 1366, 1472, 1818 |
| HpyCH4IV | ACGT | 1 cut(s) | 444 |
| HpyCH4V | TGCA | 8 cut(s) | 113, 674, 1025, 1118, 1163, 1341, 1620, 1765 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 578, 680, 1063, 1104, 1244, 1347, 1451, 1595 |
| HpyF3I | CTNAG | 8 cut(s) | 43, 176, 717, 750, 869, 1037, 1431, 1705 |
| HpySE526I | ACGT | 1 cut(s) | 444 |
| Hsp92I | GRCGYC | 1 cut(s) | 1350 |
| HspAI | GCGC | 1 cut(s) | 1990 |
| KpnI | GGTACC | 3 cut(s) | 127, 1383, 1701 |
| LmnI | GCTCC | 2 cut(s) | 476, 1010 |
| Lsp1109I | GCAGC | 2 cut(s) | 350, 1534 |
| LweI | GCATC | 7 cut(s) | 32, 554, 655, 692, 1714, 1795, 1981 |
| MaeI | CTAG | 5 cut(s) | 149, 386, 471, 741, 830 |
| MaeII | ACGT | 1 cut(s) | 444 |
| MaeIII | GTNAC | 6 cut(s) | 101, 943, 959, 998, 1366, 1796 |
| MboII | GAAGA | 5 cut(s) | 578, 870, 924, 1339, 1758 |
| MflI | RGATCY | 2 cut(s) | 1434, 1882 |
| MhlI | GDGCHC | 5 cut(s) | 44, 1015, 1135, 1430, 1872 |
| MlsI | TGGCCA | 1 cut(s) | 1057 |
| MluCI | AATT | 5 cut(s) | 267, 363, 492, 530, 804 |
| MluNI | TGGCCA | 1 cut(s) | 1057 |
| MlyI | GAGTC | 3 cut(s) | 56, 368, 1678 |
| MmeI | TCCRAC | 2 cut(s) | 483, 573 |
| Mox20I | TGGCCA | 1 cut(s) | 1057 |
| MscI | TGGCCA | 1 cut(s) | 1057 |
| MseI | TTAA | 4 cut(s) | 266, 270, 327, 1829 |
| MslI | CAYNNNNRTG | 4 cut(s) | 890, 987, 1217, 1722 |
| Msp20I | TGGCCA | 1 cut(s) | 1057 |
| MspA1I | CMGCKG | 1 cut(s) | 35 |
| MvaI | CCWGG | 8 cut(s) | 121, 158, 335, 426, 1073, 1355, 1891, 1969 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 578, 680, 1063, 1104, 1244, 1347, 1451, 1595 |
| NcoI | CCATGG | 2 cut(s) | 1166, 1976 |
| NmuCI | GTSAC | 2 cut(s) | 959, 1366 |
| NspI | RCATGY | 1 cut(s) | 1765 |
| OliI | CACNNNNGTG | 2 cut(s) | 987, 1217 |
| PacI | TTAATTAA | 1 cut(s) | 270 |
| PaeR7I | CTCGAG | 1 cut(s) | 1736 |
| PagI | TCATGA | 2 cut(s) | 891, 1848 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1686 |
| PfeI | GAWTC | 3 cut(s) | 116, 389, 1691 |
| PflFI | GACNNNGTC | 2 cut(s) | 757, 1844 |
| PfoI | TCCNGGA | 4 cut(s) | 1353, 1557, 1820, 1889 |
| PkrI | GCNGC | 4 cut(s) | 22, 340, 559, 1549 |
| PleI | GAGTC | 3 cut(s) | 56, 367, 1677 |
| PpsI | GAGTC | 3 cut(s) | 56, 367, 1677 |
| PpuMI | RGGWCCY | 1 cut(s) | 737 |
| Psp124BI | GAGCTC | 1 cut(s) | 44 |
| Psp5II | RGGWCCY | 1 cut(s) | 737 |
| Psp6I | CCWGG | 8 cut(s) | 119, 156, 333, 424, 1071, 1353, 1889, 1967 |
| PspEI | GGTNACC | 1 cut(s) | 998 |
| PspFI | CCCAGC | 1 cut(s) | 1986 |
| PspGI | CCWGG | 8 cut(s) | 119, 156, 333, 424, 1071, 1353, 1889, 1967 |
| PspPI | GGNCC | 8 cut(s) | 276, 331, 711, 737, 799, 1581, 1898, 1925 |
| PspPPI | RGGWCCY | 1 cut(s) | 737 |
| PspXI | VCTCGAGB | 1 cut(s) | 1736 |
| PstI | CTGCAG | 1 cut(s) | 1343 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1423, 1993 |
| PsuI | RGATCY | 2 cut(s) | 1434, 1882 |
| PsyI | GACNNNGTC | 2 cut(s) | 757, 1844 |
| PvuII | CAGCTG | 1 cut(s) | 35 |
| RseI | CAYNNNNRTG | 4 cut(s) | 890, 987, 1217, 1722 |
| SacI | GAGCTC | 1 cut(s) | 44 |
| SalI | GTCGAC | 1 cut(s) | 821 |
| SaqAI | TTAA | 4 cut(s) | 266, 270, 327, 1829 |
| SatI | GCNGC | 4 cut(s) | 21, 339, 558, 1548 |
| Sau96I | GGNCC | 8 cut(s) | 276, 331, 711, 737, 799, 1581, 1898, 1925 |
| ScaI | AGTACT | 1 cut(s) | 1644 |
| SchI | GAGTC | 3 cut(s) | 56, 368, 1678 |
| SduI | GDGCHC | 5 cut(s) | 44, 1015, 1135, 1430, 1872 |
| SfaNI | GCATC | 7 cut(s) | 32, 554, 655, 692, 1714, 1795, 1981 |
| SfcI | CTRYAG | 2 cut(s) | 863, 1339 |
| Sfr274I | CTCGAG | 1 cut(s) | 1736 |
| SinI | GGWCC | 3 cut(s) | 737, 799, 1581 |
| SlaI | CTCGAG | 1 cut(s) | 1736 |
| SmaI | CCCGGG | 2 cut(s) | 599, 1874 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 890, 987, 1217, 1722 |
| SmlI | CTYRAG | 1 cut(s) | 1736 |
| SmoI | CTYRAG | 1 cut(s) | 1736 |
| SpeI | ACTAGT | 1 cut(s) | 470 |
| Sse9I | AATT | 5 cut(s) | 267, 363, 492, 530, 804 |
| SsiI | CCGC | 6 cut(s) | 20, 558, 773, 1136, 1929, 1996 |
| SspI | AATATT | 1 cut(s) | 768 |
| SspMI | CTAG | 5 cut(s) | 149, 386, 471, 741, 830 |
| SstI | GAGCTC | 1 cut(s) | 44 |
| StyI | CCWWGG | 5 cut(s) | 1127, 1166, 1533, 1809, 1976 |
| TaaI | ACNGT | 7 cut(s) | 208, 757, 906, 1227, 1366, 1472, 1818 |
| TaiI | ACGT | 1 cut(s) | 447 |
| TasI | AATT | 5 cut(s) | 267, 363, 492, 530, 804 |
| TatI | WGTACW | 3 cut(s) | 84, 906, 1642 |
| TauI | GCSGC | 2 cut(s) | 23, 560 |
| TfiI | GAWTC | 3 cut(s) | 116, 389, 1691 |
| Tru1I | TTAA | 4 cut(s) | 266, 270, 327, 1829 |
| Tru9I | TTAA | 4 cut(s) | 266, 270, 327, 1829 |
| TscAI | CASTG | 5 cut(s) | 87, 112, 1187, 1224, 1606 |
| TseFI | GTSAC | 2 cut(s) | 959, 1366 |
| TseI | GCWGC | 2 cut(s) | 338, 1547 |
| Tsp45I | GTSAC | 2 cut(s) | 959, 1366 |
| TspDTI | ATGAA | 6 cut(s) | 780, 908, 986, 1865, 1930, 1967 |
| TspGWI | ACGGA | 3 cut(s) | 1316, 1385, 1607 |
| TspMI | CCCGGG | 2 cut(s) | 597, 1872 |
| TspRI | CASTG | 5 cut(s) | 87, 112, 1187, 1224, 1606 |
| Tth111I | GACNNNGTC | 2 cut(s) | 757, 1844 |
| VpaK11BI | GGWCC | 3 cut(s) | 737, 799, 1581 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 423 |
| XapI | RAATTY | 1 cut(s) | 530 |
| XceI | RCATGY | 1 cut(s) | 1765 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1069, 1246 |
| XhoI | CTCGAG | 1 cut(s) | 1736 |
| XmaI | CCCGGG | 2 cut(s) | 597, 1872 |
| XmiI | GTMKAC | 4 cut(s) | 513, 822, 1714, 1860 |
| XspI | CTAG | 5 cut(s) | 149, 386, 471, 741, 830 |
| ZrmI | AGTACT | 1 cut(s) | 1644 |