Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00906

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

29224 .. 34646

Gene Structure 5423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G020130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1989 bp

ATGCCCTTCGGTCTCAAGAATGCCGGAGCCACATACCAACGCCTTGTGAACCACATGTTTGCTGATCTGATCGGTAACACCGTAGAAGTCTATGTTGATGACATGCTAGTCAAGAGCACACATGTTACAAACCATGTGGAGAATTTGGAAAGAGCATTCAAGATATTGAGGGAGTATGGAATGAGGTTGAACCCTGAAAAGTGTGCATTCGACGTCCACTCGGGAAAATTTTTGGGTTTCATGGTCCGGAGCCTCACTGGTAGAGTAGCAGCACTGAACCGTTTCATCTCAAGGTCCACCGACCGGTGTCTCCCATTCTTCAAAGCCTTGAAAGGAGCAGGAATGAGCATCAACTGGACCGAGGAGTGCGAGAAGGCTTTCATCAGTCTGAAGGAACATATGGGAAAAGCACATGTGCTCTCTAAACCAAAACCGGGGGAAATACTCCTAATCTACCTATCGGTATCGAGTGCAGCAATTAGTTCCGTACTTGTTCGTGAAGAAGAGAAGGACGAAGAAGCAATATACTATGTCAGCAAGGGATTCACGGATGTGGAACTCCGGTACCCGGAGATTGAAAAGTTGGCTCTAGCCCTCGTAACCTCAGCCAGGAAGCTTAGACCATACTTCCAAGCCCATTCCATCAAAGTAATGACTAATCAACCACTAAAGCAAGTGCTGTGGAAGCCCGAGACGTCGGGAAGGCTTGTCAAGTGGGCGATTGAATTGGGGGAATTCGACATCCACTACCACCCACGCACGGCCATCAAAGGCCAGGCTGTGGCAGATTTTATATCAGAATTCACTCGCCCACTTTACCCTGAGGTCACGACTGAGGTCCAAGAAAGTGATCAGCCACCAAGAGATGAAGCTCGACCATCAACAGAAAAGGTTCCACCTCTGAGAGAAGAGGTTCCTGCATCCAAGGACAGCGATCAAAGTCTAATATGGACGCTCCAAGTCGATGGATCCTCCAACCAAGTAGGGAGTGGAGCAGGCCTGGTCCTCACAACCCCACACAAGGCAGAATTTGAGTATGCCCTCCGATTTAACTTCAAAGCGTCTAATAACGAAGCGGAATACGAGGCTCTCATCACAGGCCTTCGTATTGCAAGAGAGCTAGGATCAGCTCGAATTCGGGTACACAGCGACTCTCAACTCGTGGTCAACCAAGTATTGTCAAAAGATCTCACAATGGCTGCATACCTTGCGAAAGTGAAATCTCTCCTATCAAGCTTCGCATCATACGAAGTCATACAAATACCGAGGGCACAAAACGAGCGTGTCGACGCATTGGCTCGACTAGCATTAGCCATCGACTGTGATGTCGGGCGAAGTACCCCAATTGAGCATCTAAACAGGCCAAGCATCAAAGAAGACCTGGAAATATCCCAAATCAATGGTGTACCCAGTTGGATGGACCCTCGCGGCTACTCTGCCCCTTACTTGTGCTGTGTAACCTTTGAGGAAGGAAGGAATGTACTGGCGGACATCCACGAGGGGCTCTGCGGGAACCACTCAGGTGCTCGCTCCTTAGCTCTCAAGACACTCAGGCAAGGGACAACACCCTGCACTTCCACAAAGGAAACTCCTTTTTCACTGGCCTATGGCTCGGAGGCAGTGGTACCAGTGGAACTGAAGACATTAACTCACCGAGTCGACACGTTCAACGTAGAGGAAAACGATCAACAATTGCGCCTCAACCTAGACTTGGTTGAGGAAAGAAGGGAGGATAAGGAGCTGTATCGGGCCGCATATCAACAGCGAGTCACCAGATACTACAATCGCAATGTCAAGGAACGAATTTTTCGAGTTGGAGACTTAGTCCTCAAAAAAGTCACACTTGCTTCAAAAGACAAACCTTCAGGAACATTGGGCGCCAACTGGGAAGGGCCCTATAAGGTCATTGGCATCGAATGTCCAGGAACTTACTCACTGTCCAATCTTGCCGGGAAAAGACTCCCCACCCTTGGAACATCCAGAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

662

Amino Acids

74.22

Weight (kDa)

7.95

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	1 - 81	1.2e-16	Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2	PF17919	119 - 217	9.7e-20	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	149 - 246	2.1e-16	RNase H-like domain found in reverse transcriptase
RVT_3	PF13456	321 - 435	9.4e-17	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	107, 1325
AatII	GACGTC	2 cut(s)	216, 698
Acc65I	GGTACC	2 cut(s)	564, 1624
AccB1I	GGYRCC	3 cut(s)	564, 1624, 1877
AccB7I	CCANNNNNTGG	1 cut(s)	781
AccI	GTMKAC	2 cut(s)	1287, 1659
AccII	CGCG	1 cut(s)	1428
AccIII	TCCGGA	1 cut(s)	246
AciI	CCGC	5 cut(s)	1076, 1428, 1487, 1509, 1752
AclWI	GGATC	3 cut(s)	963, 976, 1132
AcoI	YGGCCR	1 cut(s)	762
AcsI	RAATTY	7 cut(s)	142, 227, 734, 800, 1028, 1134, 1803
AcuI	CTGAAG	3 cut(s)	410, 1658, 1848
AcyI	GRCGYC	3 cut(s)	213, 695, 1878
AfaI	GTAC	7 cut(s)	489, 566, 1143, 1339, 1407, 1482, 1626
AfiI	CCNNNNNNNGG	9 cut(s)	303, 434, 568, 609, 760, 781, 1021, 1711, 1970
AflIII	ACRYGT	4 cut(s)	54, 121, 412, 1662
AgeI	ACCGGT	1 cut(s)	303
AgsI	TTSAA	9 cut(s)	160, 190, 322, 331, 578, 725, 1057, 1669, 1851
AjnI	CCWGG	5 cut(s)	608, 774, 999, 1380, 1921
AleI	CACNNNNGTG	2 cut(s)	551, 1521
AluBI	AGCT	7 cut(s)	616, 872, 1120, 1130, 1236, 1538, 1741
AluI	AGCT	7 cut(s)	616, 872, 1120, 1130, 1236, 1538, 1741
Alw21I	GWGCWC	3 cut(s)	119, 420, 1528
Alw26I	GTCTC	4 cut(s)	17, 314, 686, 1812
AlwI	GGATC	3 cut(s)	963, 976, 1132
AlwNI	CAGNNNCTG	1 cut(s)	1986
Ama87I	CYCGRG	2 cut(s)	220, 689
Aor13HI	TCCGGA	1 cut(s)	246
AoxI	GGCC	8 cut(s)	762, 772, 997, 1099, 1361, 1602, 1749, 1892
ApaI	GGGCCC	1 cut(s)	1896
ApeKI	GCWGC	3 cut(s)	269, 473, 1199
ApoI	RAATTY	7 cut(s)	142, 227, 734, 800, 1028, 1134, 1803
AsiGI	ACCGGT	1 cut(s)	303
Asp700I	GAANNNNTTC	4 cut(s)	281, 377, 891, 912
Asp718I	GGTACC	2 cut(s)	564, 1624
AspLEI	GCGC	2 cut(s)	1698, 1880
AspS9I	GGNCC	9 cut(s)	244, 294, 357, 838, 1003, 1420, 1749, 1892, 1893
AsuC2I	CCSGG	3 cut(s)	435, 569, 1951
AsuHPI	GGTGA	2 cut(s)	1643, 1762
AvaI	CYCGRG	2 cut(s)	220, 689
AvaII	GGWCC	6 cut(s)	244, 294, 357, 838, 1003, 1420
AxyI	CCTNAGG	1 cut(s)	822
BaeGI	GKGCMC	2 cut(s)	1273, 1896
BaeI	ACNNNNGTAYC	2 cut(s)	548, 581
BamHI	GGATCC	1 cut(s)	968
BanI	GGYRCC	3 cut(s)	564, 1624, 1877
BanII	GRGCYC	2 cut(s)	1506, 1896
BauI	CACGAG	2 cut(s)	1160, 1496
BbsI	GAAGAC	2 cut(s)	1383, 1646
Bbv12I	GWGCWC	3 cut(s)	119, 420, 1528
BbvCI	CCTCAGC	1 cut(s)	604
BbvI	GCAGC	3 cut(s)	281, 485, 1186
BccI	CCATC	6 cut(s)	650, 773, 886, 959, 1322, 1411
BceAI	ACGGC	1 cut(s)	777
BciT130I	CCWGG	5 cut(s)	610, 776, 1001, 1382, 1923
BclI	TGATCA	1 cut(s)	850
BcnI	CCSGG	3 cut(s)	435, 569, 1951
BcoDI	GTCTC	4 cut(s)	17, 314, 686, 1812
BfaI	CTAG	5 cut(s)	107, 590, 1121, 1304, 1706
BfoI	RGCGCY	1 cut(s)	1881
BglII	AGATCT	1 cut(s)	1186
BisI	GCNGC	5 cut(s)	270, 474, 1200, 1429, 1752
BlsI	GCNGC	5 cut(s)	271, 475, 1201, 1430, 1753
Bme1390I	CCNGG	8 cut(s)	435, 569, 610, 776, 1001, 1382, 1923, 1951
Bme18I	GGWCC	6 cut(s)	244, 294, 357, 838, 1003, 1420
BmeT110I	CYCGRG	2 cut(s)	220, 689
BmgT120I	GGNCC	9 cut(s)	244, 294, 357, 838, 1003, 1420, 1749, 1892, 1893
BmrFI	CCNGG	8 cut(s)	435, 569, 610, 776, 1001, 1382, 1923, 1951
BmrI	ACTGGG	2 cut(s)	1404, 1894
BmsI	GCATC	6 cut(s)	357, 929, 1250, 1360, 1377, 1920
BmuI	ACTGGG	2 cut(s)	1404, 1894
BoxI	GACNNNNGTC	2 cut(s)	306, 836
BpiI	GAAGAC	2 cut(s)	1383, 1646
Bpu10I	CCTNAGC	2 cut(s)	604, 1534
BpuEI	CTTGAG	2 cut(s)	274, 1526
BpuMI	CCSGG	3 cut(s)	435, 569, 1951
BsaHI	GRCGYC	3 cut(s)	213, 695, 1878
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	5 cut(s)	360, 434, 924, 1265, 1969
BsaWI	WCCGGW	3 cut(s)	246, 303, 561
BsaXI	ACNNNNNCTCC	2 cut(s)	1809, 1839
Bsc4I	CCNNNNNNNGG	9 cut(s)	303, 434, 568, 609, 760, 781, 1021, 1711, 1970
Bse118I	RCCGGY	1 cut(s)	303
Bse1I	ACTGG	7 cut(s)	262, 359, 1410, 1488, 1605, 1628, 1889
Bse21I	CCTNAGG	1 cut(s)	822
Bse3DI	GCAATG	1 cut(s)	1795
BseAI	TCCGGA	1 cut(s)	246
BseBI	CCWGG	5 cut(s)	610, 776, 1001, 1382, 1923
BseDI	CCNNGG	5 cut(s)	360, 434, 924, 1265, 1969
BseGI	GGATG	6 cut(s)	556, 741, 920, 1422, 1491, 1976
BseLI	CCNNNNNNNGG	9 cut(s)	303, 434, 568, 609, 760, 781, 1021, 1711, 1970
BseMI	GCAATG	1 cut(s)	1795
BseMII	CTCAG	6 cut(s)	618, 813, 825, 893, 1533, 1564
BseNI	ACTGG	7 cut(s)	262, 359, 1410, 1488, 1605, 1628, 1889
BseRI	GAGGAG	1 cut(s)	377
BseSI	GKGCMC	2 cut(s)	1273, 1896
BseXI	GCAGC	3 cut(s)	281, 485, 1186
BsgI	GTGCAG	2 cut(s)	492, 1555
Bsh1236I	CGCG	1 cut(s)	1428
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	8 cut(s)	764, 774, 999, 1101, 1363, 1604, 1751, 1894
BshNI	GGYRCC	3 cut(s)	564, 1624, 1877
BshTI	ACCGGT	1 cut(s)	303
BsiEI	CGRYCG	1 cut(s)	304
BsiHKAI	GWGCWC	3 cut(s)	119, 420, 1528
BsiHKCI	CYCGRG	2 cut(s)	220, 689
BsiSI	CCGG	7 cut(s)	24, 247, 304, 434, 562, 569, 1950
BslFI	GGGAC	1 cut(s)	1573
BslI	CCNNNNNNNGG	9 cut(s)	303, 434, 568, 609, 760, 781, 1021, 1711, 1970
BsmAI	GTCTC	4 cut(s)	17, 314, 686, 1812
BsmBI	CGTCTC	1 cut(s)	686
BsmFI	GGGAC	1 cut(s)	1573
BsmI	GAATGC	3 cut(s)	25, 155, 206
BsnI	GGCC	8 cut(s)	764, 774, 999, 1101, 1363, 1604, 1751, 1894
Bso31I	GGTCTC	1 cut(s)	17
BsoBI	CYCGRG	2 cut(s)	220, 689
Bsp120I	GGGCCC	1 cut(s)	1892
Bsp1286I	GDGCHC	6 cut(s)	119, 420, 1273, 1506, 1528, 1896
Bsp13I	TCCGGA	1 cut(s)	246
Bsp143I	GATC	8 cut(s)	64, 69, 850, 934, 968, 1124, 1186, 1684
BspACI	CCGC	5 cut(s)	1076, 1428, 1487, 1509, 1752
BspANI	GGCC	8 cut(s)	764, 774, 999, 1101, 1363, 1604, 1751, 1894
BspCNI	CTCAG	6 cut(s)	617, 814, 826, 894, 1532, 1563
BspEI	TCCGGA	1 cut(s)	246
BspFNI	CGCG	1 cut(s)	1428
BspPI	GGATC	3 cut(s)	963, 976, 1132
BspT107I	GGYRCC	3 cut(s)	564, 1624, 1877
BspTNI	GGTCTC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	1795
BsrFI	RCCGGY	1 cut(s)	303
BsrI	ACTGG	7 cut(s)	262, 359, 1410, 1488, 1605, 1628, 1889
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	5 cut(s)	360, 434, 924, 1265, 1969
BssMI	GATC	8 cut(s)	64, 69, 850, 934, 968, 1124, 1186, 1684
BssNI	GRCGYC	3 cut(s)	213, 695, 1878
BssSI	CACGAG	2 cut(s)	1160, 1496
BssT1I	CCWWGG	2 cut(s)	924, 1969
Bst2BI	CACGAG	2 cut(s)	1160, 1496
Bst2UI	CCWGG	5 cut(s)	610, 776, 1001, 1382, 1923
Bst4CI	ACNGT	4 cut(s)	82, 281, 1322, 1938
Bst6I	CTCTTC	2 cut(s)	498, 903
BstACI	GRCGYC	3 cut(s)	213, 695, 1878
BstAPI	GCANNNNNTGC	1 cut(s)	1208
BstC8I	GCNNGC	2 cut(s)	997, 1528
BstDEI	CTNAG	9 cut(s)	604, 617, 822, 834, 902, 1519, 1534, 1550, 1822
BstENI	CCTNNNNNAGG	1 cut(s)	607
BstF5I	GGATG	6 cut(s)	556, 741, 920, 1422, 1491, 1976
BstFNI	CGCG	1 cut(s)	1428
BstH2I	RGCGCY	1 cut(s)	1881
BstHHI	GCGC	2 cut(s)	1698, 1880
BstKTI	GATC	8 cut(s)	67, 72, 853, 937, 971, 1127, 1189, 1687
BstMAI	GTCTC	4 cut(s)	17, 314, 686, 1812
BstMBI	GATC	8 cut(s)	64, 69, 850, 934, 968, 1124, 1186, 1684
BstMCI	CGRYCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	3 cut(s)	685, 1208, 1304
BstNI	CCWGG	5 cut(s)	610, 776, 1001, 1382, 1923
BstNSI	RCATGY	4 cut(s)	58, 106, 125, 416
BstPAI	GACNNNNGTC	2 cut(s)	306, 836
BstSCI	CCNGG	8 cut(s)	433, 567, 608, 774, 999, 1380, 1921, 1949
BstSLI	GKGCMC	2 cut(s)	1273, 1896
BstUI	CGCG	1 cut(s)	1428
BstV1I	GCAGC	3 cut(s)	281, 485, 1186
BstV2I	GAAGAC	2 cut(s)	1383, 1646
BstX2I	RGATCY	2 cut(s)	968, 1186
BstXI	CCANNNNNNTGG	3 cut(s)	965, 1400, 1417
BstYI	RGATCY	2 cut(s)	968, 1186
Bsu36I	CCTNAGG	1 cut(s)	822
BsuRI	GGCC	8 cut(s)	764, 774, 999, 1101, 1363, 1604, 1751, 1894
BtsCI	GGATG	6 cut(s)	556, 741, 920, 1422, 1491, 1976
BtsI	GCAGTG	1 cut(s)	1626
BtsIMutI	CAGTG	6 cut(s)	255, 272, 1598, 1626, 1635, 1934
Cac8I	GCNNGC	2 cut(s)	997, 1528
CaiI	CAGNNNCTG	1 cut(s)	1986
CfoI	GCGC	2 cut(s)	1698, 1880
Cfr10I	RCCGGY	1 cut(s)	303
Cfr13I	GGNCC	9 cut(s)	244, 294, 357, 838, 1003, 1420, 1749, 1892, 1893
CseI	GACGC	3 cut(s)	961, 1050, 1298
Csp6I	GTAC	7 cut(s)	488, 565, 1142, 1338, 1406, 1481, 1625
CspAI	ACCGGT	1 cut(s)	303
CspCI	CAANNNNNGTGG	4 cut(s)	117, 152, 662, 697
CviAII	CATG	6 cut(s)	55, 103, 122, 134, 241, 413
CviQI	GTAC	7 cut(s)	488, 565, 1142, 1338, 1406, 1481, 1625
DdeI	CTNAG	9 cut(s)	604, 617, 822, 834, 902, 1519, 1534, 1550, 1822
DinI	GGCGCC	1 cut(s)	1879
DpnI	GATC	8 cut(s)	66, 71, 852, 936, 970, 1126, 1188, 1686
DpnII	GATC	8 cut(s)	64, 69, 850, 934, 968, 1124, 1186, 1684
DrdI	GACNNNNNNGTC	2 cut(s)	107, 1325
DseDI	GACNNNNNNGTC	2 cut(s)	107, 1325
EaeI	YGGCCR	1 cut(s)	762
Eam1104I	CTCTTC	2 cut(s)	498, 903
EarI	CTCTTC	2 cut(s)	498, 903
EciI	GGCGGA	1 cut(s)	1502
Eco130I	CCWWGG	2 cut(s)	924, 1969
Eco147I	AGGCCT	2 cut(s)	999, 1101
Eco24I	GRGCYC	2 cut(s)	1506, 1896
Eco31I	GGTCTC	1 cut(s)	17
Eco47I	GGWCC	6 cut(s)	244, 294, 357, 838, 1003, 1420
Eco57I	CTGAAG	3 cut(s)	410, 1658, 1848
Eco81I	CCTNAGG	1 cut(s)	822
Eco88I	CYCGRG	2 cut(s)	220, 689
EcoNI	CCTNNNNNAGG	1 cut(s)	607
EcoO109I	RGGNCCY	2 cut(s)	1892, 1893
EcoRI	GAATTC	3 cut(s)	734, 800, 1134
EcoRII	CCWGG	5 cut(s)	608, 774, 999, 1380, 1921
EcoT14I	CCWWGG	2 cut(s)	924, 1969
EcoT38I	GRGCYC	2 cut(s)	1506, 1896
EgeI	GGCGCC	1 cut(s)	1879
EheI	GGCGCC	1 cut(s)	1879
ErhI	CCWWGG	2 cut(s)	924, 1969
Esp3I	CGTCTC	1 cut(s)	686
FaeI	CATG	6 cut(s)	58, 106, 125, 137, 244, 416
FalI	AAGNNNNNCTT	2 cut(s)	1827, 1859
FaqI	GGGAC	1 cut(s)	1573
FatI	CATG	6 cut(s)	54, 102, 121, 133, 240, 412
FauI	CCCGC	1 cut(s)	1502
FauNDI	CATATG	1 cut(s)	399
FbaI	TGATCA	1 cut(s)	850
FblI	GTMKAC	2 cut(s)	1287, 1659
Fnu4HI	GCNGC	5 cut(s)	270, 474, 1200, 1429, 1752
FokI	GGATG	6 cut(s)	563, 728, 907, 1429, 1478, 1963
FriOI	GRGCYC	2 cut(s)	1506, 1896
Fsp4HI	GCNGC	5 cut(s)	270, 474, 1200, 1429, 1752
FspBI	CTAG	5 cut(s)	107, 590, 1121, 1304, 1706
GlaI	GCGC	2 cut(s)	1697, 1879
GluI	GCNGC	5 cut(s)	270, 474, 1200, 1429, 1752
HaeII	RGCGCY	1 cut(s)	1881
HaeIII	GGCC	8 cut(s)	764, 774, 999, 1101, 1363, 1604, 1751, 1894
HapII	CCGG	7 cut(s)	24, 247, 304, 434, 562, 569, 1950
HgaI	GACGC	3 cut(s)	961, 1050, 1298
HhaI	GCGC	2 cut(s)	1698, 1880
Hin1I	GRCGYC	3 cut(s)	213, 695, 1878
Hin1II	CATG	6 cut(s)	58, 106, 125, 137, 244, 416
Hin6I	GCGC	2 cut(s)	1696, 1878
HinP1I	GCGC	2 cut(s)	1696, 1878
HincII	GTYRAC	3 cut(s)	1168, 1288, 1660
HindII	GTYRAC	3 cut(s)	1168, 1288, 1660
HindIII	AAGCTT	2 cut(s)	614, 1234
HinfI	GANTC	5 cut(s)	543, 1151, 1656, 1767, 1959
HpaII	CCGG	7 cut(s)	24, 247, 304, 434, 562, 569, 1950
HphI	GGTGA	2 cut(s)	1643, 1762
Hpy166II	GTNNAC	8 cut(s)	49, 217, 297, 1144, 1168, 1288, 1406, 1660
Hpy188I	TCNGA	6 cut(s)	69, 390, 799, 903, 1046, 1615
Hpy8I	GTNNAC	8 cut(s)	49, 217, 297, 1144, 1168, 1288, 1406, 1660
Hpy99I	CGWCG	3 cut(s)	215, 700, 1292
HpyCH4III	ACNGT	4 cut(s)	82, 281, 1322, 1938
HpyCH4IV	ACGT	4 cut(s)	213, 695, 1664, 1671
HpyCH4V	TGCA	6 cut(s)	206, 473, 920, 1112, 1202, 1572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	685, 1208, 1304
HpyF3I	CTNAG	9 cut(s)	604, 617, 822, 834, 902, 1519, 1534, 1550, 1822
HpySE526I	ACGT	4 cut(s)	213, 695, 1664, 1671
Hsp92I	GRCGYC	3 cut(s)	213, 695, 1878
Hsp92II	CATG	6 cut(s)	58, 106, 125, 137, 244, 416
HspAI	GCGC	2 cut(s)	1696, 1878
KasI	GGCGCC	1 cut(s)	1877
Kpn2I	TCCGGA	1 cut(s)	246
KpnI	GGTACC	2 cut(s)	568, 1628
Ksp22I	TGATCA	1 cut(s)	850
Kzo9I	GATC	8 cut(s)	64, 69, 850, 934, 968, 1124, 1186, 1684
LmnI	GCTCC	7 cut(s)	26, 249, 335, 960, 992, 1535, 1738
Lsp1109I	GCAGC	3 cut(s)	281, 485, 1186
LweI	GCATC	6 cut(s)	357, 929, 1250, 1360, 1377, 1920
MaeI	CTAG	5 cut(s)	107, 590, 1121, 1304, 1706
MaeII	ACGT	4 cut(s)	213, 695, 1664, 1671
MaeIII	GTNAC	7 cut(s)	74, 124, 598, 826, 1456, 1768, 1837
MalI	GATC	8 cut(s)	66, 71, 852, 936, 970, 1126, 1188, 1686
MboI	GATC	8 cut(s)	64, 69, 850, 934, 968, 1124, 1186, 1684
MboII	GAAGA	7 cut(s)	310, 512, 515, 527, 920, 1388, 1651
MfeI	CAATTG	2 cut(s)	1344, 1691
MflI	RGATCY	2 cut(s)	968, 1186
MhlI	GDGCHC	6 cut(s)	119, 420, 1273, 1506, 1528, 1896
Mly113I	GGCGCC	1 cut(s)	1878
MlyI	GAGTC	4 cut(s)	1145, 1665, 1776, 1953
MmeI	TCCRAC	3 cut(s)	999, 1394, 1795
MroI	TCCGGA	1 cut(s)	246
MroXI	GAANNNNTTC	4 cut(s)	281, 377, 891, 912
MseI	TTAA	2 cut(s)	1050, 1646
MslI	CAYNNNNRTG	2 cut(s)	551, 1521
MspI	CCGG	7 cut(s)	24, 247, 304, 434, 562, 569, 1950
MspR9I	CCNGG	8 cut(s)	435, 569, 610, 776, 1001, 1382, 1923, 1951
MunI	CAATTG	2 cut(s)	1344, 1691
Mva1269I	GAATGC	3 cut(s)	25, 155, 206
MvaI	CCWGG	5 cut(s)	610, 776, 1001, 1382, 1923
MvnI	CGCG	1 cut(s)	1428
MwoI	GCNNNNNNNGC	3 cut(s)	685, 1208, 1304
NarI	GGCGCC	1 cut(s)	1878
NciI	CCSGG	3 cut(s)	435, 569, 1951
NdeI	CATATG	1 cut(s)	399
NdeII	GATC	8 cut(s)	64, 69, 850, 934, 968, 1124, 1186, 1684
NlaIII	CATG	6 cut(s)	58, 106, 125, 137, 244, 416
NmuCI	GTSAC	3 cut(s)	826, 1768, 1837
NspI	RCATGY	4 cut(s)	58, 106, 125, 416
OliI	CACNNNNGTG	2 cut(s)	551, 1521
PceI	AGGCCT	2 cut(s)	999, 1101
PciI	ACATGT	3 cut(s)	54, 121, 412
PcsI	WCGNNNNNNNCGW	4 cut(s)	78, 1245, 1284, 1807
PctI	GAATGC	3 cut(s)	25, 155, 206
PdmI	GAANNNNTTC	4 cut(s)	281, 377, 891, 912
PfeI	GAWTC	1 cut(s)	543
PflFI	GACNNNGTC	1 cut(s)	1823
PflMI	CCANNNNNTGG	1 cut(s)	781
PfoI	TCCNGGA	1 cut(s)	1921
PinAI	ACCGGT	1 cut(s)	303
PkrI	GCNGC	5 cut(s)	271, 475, 1201, 1430, 1753
PleI	GAGTC	4 cut(s)	1145, 1664, 1775, 1953
PluTI	GGCGCC	1 cut(s)	1881
PpsI	GAGTC	4 cut(s)	1145, 1664, 1775, 1953
PscI	ACATGT	3 cut(s)	54, 121, 412
PshAI	GACNNNNGTC	2 cut(s)	306, 836
Psp6I	CCWGG	5 cut(s)	608, 774, 999, 1380, 1921
PspGI	CCWGG	5 cut(s)	608, 774, 999, 1380, 1921
PspOMI	GGGCCC	1 cut(s)	1892
PspPI	GGNCC	9 cut(s)	244, 294, 357, 838, 1003, 1420, 1749, 1892, 1893
PstNI	CAGNNNCTG	1 cut(s)	1986
PsuI	RGATCY	2 cut(s)	968, 1186
PsyI	GACNNNGTC	1 cut(s)	1823
RsaI	GTAC	7 cut(s)	489, 566, 1143, 1339, 1407, 1482, 1626
RsaNI	GTAC	7 cut(s)	488, 565, 1142, 1338, 1406, 1481, 1625
RseI	CAYNNNNRTG	2 cut(s)	551, 1521
SalI	GTCGAC	2 cut(s)	1286, 1658
SaqAI	TTAA	2 cut(s)	1050, 1646
SatI	GCNGC	5 cut(s)	270, 474, 1200, 1429, 1752
Sau3AI	GATC	8 cut(s)	64, 69, 850, 934, 968, 1124, 1186, 1684
Sau96I	GGNCC	9 cut(s)	244, 294, 357, 838, 1003, 1420, 1749, 1892, 1893
SchI	GAGTC	4 cut(s)	1145, 1665, 1776, 1953
ScrFI	CCNGG	8 cut(s)	435, 569, 610, 776, 1001, 1382, 1923, 1951
SduI	GDGCHC	6 cut(s)	119, 420, 1273, 1506, 1528, 1896
SfaNI	GCATC	6 cut(s)	357, 929, 1250, 1360, 1377, 1920
SfoI	GGCGCC	1 cut(s)	1879
SinI	GGWCC	6 cut(s)	244, 294, 357, 838, 1003, 1420
SmiMI	CAYNNNNRTG	2 cut(s)	551, 1521
SmlI	CTYRAG	3 cut(s)	14, 289, 1541
SmoI	CTYRAG	3 cut(s)	14, 289, 1541
SseBI	AGGCCT	2 cut(s)	999, 1101
SsiI	CCGC	5 cut(s)	1076, 1428, 1487, 1509, 1752
SspDI	GGCGCC	1 cut(s)	1877
SspMI	CTAG	5 cut(s)	107, 590, 1121, 1304, 1706
StuI	AGGCCT	2 cut(s)	999, 1101
StyD4I	CCNGG	8 cut(s)	433, 567, 608, 774, 999, 1380, 1921, 1949
StyI	CCWWGG	2 cut(s)	924, 1969
TaaI	ACNGT	4 cut(s)	82, 281, 1322, 1938
TaiI	ACGT	4 cut(s)	216, 698, 1667, 1674
TaqII	GACCGA	1 cut(s)	374
TatI	WGTACW	1 cut(s)	1480
TauI	GCSGC	2 cut(s)	1431, 1754
TfiI	GAWTC	1 cut(s)	543
Tru1I	TTAA	2 cut(s)	1050, 1646
Tru9I	TTAA	2 cut(s)	1050, 1646
TscAI	CASTG	6 cut(s)	262, 279, 1605, 1626, 1635, 1941
TseFI	GTSAC	3 cut(s)	826, 1768, 1837
TseI	GCWGC	3 cut(s)	269, 473, 1199
Tsp45I	GTSAC	3 cut(s)	826, 1768, 1837
TspDTI	ATGAA	4 cut(s)	229, 274, 370, 882
TspGWI	ACGGA	2 cut(s)	475, 563
TspRI	CASTG	6 cut(s)	262, 279, 1605, 1626, 1635, 1941
Tth111I	GACNNNGTC	1 cut(s)	1823
Van91I	CCANNNNNTGG	1 cut(s)	781
VpaK11BI	GGWCC	6 cut(s)	244, 294, 357, 838, 1003, 1420
XagI	CCTNNNNNAGG	1 cut(s)	607
XapI	RAATTY	7 cut(s)	142, 227, 734, 800, 1028, 1134, 1803
XceI	RCATGY	4 cut(s)	58, 106, 125, 416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	986
XmiI	GTMKAC	2 cut(s)	1287, 1659
XmnI	GAANNNNTTC	4 cut(s)	281, 377, 891, 912
XspI	CTAG	5 cut(s)	107, 590, 1121, 1304, 1706
ZraI	GACGTC	2 cut(s)	214, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.