Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

32183922 .. 32194112

Gene Structure 10191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G025660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2208 bp

ATGCTTCTCATGAAGTTCCCCACGCCCAATGGCACAGGCTGTGTGAGGGGAAGCCAACAGCTGGCACGAGAATGCTATTCAACATCTGTAGCGCGGTCAACGCGCCGCCATGAAATCCTGACAGTGGGTAATGACCCACCACCACCGAATATCTTTGAGGATCCTAGAGATGAAGAGAAGAAATATGTAATGAAGGAGCCGGTCAACCCGGACACGTCACTAAGGACCGTCTGCATCTCAGACGAGCATCCTGAGAGGACAGTCCGCATAGGCTCCCAGCTAGACCCAGAAGTGGAGGCAGAACTCACTCAGTTCTTACGTGACAACGCCACCGTCTTTGCATGGTCCTATGCAGACATGCCTGGCATCTCCACTGAAATAATCACCCATAAACTGACCATCAAACCTTCTTTCTATCCTATCAAGCAGAAGCGGAGGGCCTTTGATGAGGAAAAATACCGGGCAATCGGACAGGAGGTCGCCAAACTACGGGACATTGGATTCATCCGCCAGGTCATCTACCCCCAATGGATCTCAAATCTGGTAATGGTGAAGAAGCCCAGCGGCAAGTGGCGGATGTGCGTCGACTTCAAAAACCTAAACAAGGCATGCCCAAAAGATAGTTTCCCGCTACCTCGTATCGATCAGCTGGTCGATGCAACCGCCGGACACGAACTCCTCAGCATGATGGATGCCTTCTCTGGATACAATCAGATCAAAATGCACCCCAGCGACCAAGAATGCACCACCTTCACCACCGACAAGGGCCTTTACTGCTACAATGTCATGCCTTTTGGTCTGAAGAACGCCGGTGCAACTTATCAGCGGTTGATGAACGCAATGTTCGCTGAGCATCTGGGAAAAATCATCGAGCGAGGTATCGAGGCTAACCCAGACAAGGTACAGGCCATCCTTGACCTGTCGGACCCGAAGTATAAGGTAGACGTCCAGTGTCTCCAGGGCAAGTTGACCGCCCTTTCTCGATTCATCTCCCGACTTACTGACAAGTGCGCCCCATTCTTCAAACTTCTCAAAACAACTCACAAGAAGGTCATTGACTGGAACCCAGAATGTCAGGCGGCGTTCCAAGGTCTAAAGGAATATTTGGCGGCAGTCCCTCTCCTTTCTGTCCCTGTCCAAGGAGAGACACTATTCATATATCTGGCGGTCTCGGCAACGGCAATAAGTTGCGCCATTGTTCGGCGGGAGGGTCAGGATGAACTCCCAGTATTCTACGCCGGCAGAGGTATGAACGGAGCAGAAACAAGCGACTCCCAACTAGTCGTCAACCAGGTCAACGACAGCTTCCAAGCCAAGGACCAGCAGCTAGCGGCGTATCTGGGGTACGTCAAAACGTTGCTAAAAAAGTTCAAGTTTCACACAATCACACAAATCCCCAGGGAAAAGAACGCTAAGGCTGATTCCCTGGCGAGACTGGCAACCGCCCAACCACATCAGAGTCCGGCGGACACAAGGGTGGAGTATCTTGACAAACCAAGTATCACAAAGACTCTGGCGGAAATCTTCAACATTCAGGTCAACCCCAGCTGGATGGACGAGATCATCATGTATAAGCGCAACGGAACGTTGCCAGAAGATAAGATCCAGGCAAGACAGCTCCAACGAAGAGCAACCCGCTACAACATCCAGCACGGCAAACTCTACCGCCAGGGATTCACCCATCCAAACCTCCGCTGTCTAACCCCAGAGGAGGGAAGGGTTGTCCTAACTGAAATCCATAGCGGAGAATGCGGAAACCACTCGGGCGCCAGATCCCTGGCCAACCGCACAATGCGACAAGGGTACTTCTGGCCCACACTTGGCGATGACGCCCGGCGGATTTCGAGCAAGTGGATAGAGGCAGAGCCACTGACGGCAATAACTACCGCCAAGGTAATTCACTTCCTTTGGAAGAATATCTATTGCCGCTACGGTGTCCCACACACAATCATCACAGATAACGGCACACAGTTCAACAATGACGAGCTCATCTCCTTCACCGTCAACTTGGGCACCAAGCTGAGGTTTGCATCTGTCGCCCACCCCCAGACCAACGGCCAGGTCGAAGCGGCGAACAAGATAATAAAAAAGTTGTTAAAAAAGAAGCTCGACGACGCCAAGGGTTTATGGGCGGAAAAGCTCCCAGAGGTCCTGTGGGCCATCCGAACAACTCCAACTTCCGCCACAGGAGAAACCCCTTTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

735

Amino Acids

83.12

Weight (kDa)

9.08

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	184 - 287	3e-20	Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2	PF17919	354 - 423	3e-08	RNase H-like domain found in reverse transcriptase
RVT_3	PF13456	423 - 479	3.6e-07	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	948
AccB1I	GGYRCC	2 cut(s)	1766, 2012
AccB7I	CCANNNNNTGG	1 cut(s)	61
AccI	GTMKAC	2 cut(s)	585, 942
AccII	CGCG	2 cut(s)	94, 103
AclI	AACGTT	2 cut(s)	1355, 1586
AclWI	GGATC	5 cut(s)	155, 168, 539, 1597, 1767
AcoI	YGGCCR	2 cut(s)	1779, 2056
AcuI	CTGAAG	1 cut(s)	821
AcyI	GRCGYC	4 cut(s)	945, 1767, 1830, 2115
AfaI	GTAC	3 cut(s)	903, 1346, 1805
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	6 cut(s)	81, 592, 1024, 1372, 1528, 1975
AhdI	GACNNNNNGTC	1 cut(s)	476
AhlI	ACTAGT	1 cut(s)	1279
AjiI	CACGTC	1 cut(s)	216
AleI	CACNNNNGTG	1 cut(s)	1475
Alw21I	GWGCWC	1 cut(s)	1989
Alw26I	GTCTC	4 cut(s)	959, 1139, 1174, 1426
AlwI	GGATC	5 cut(s)	155, 168, 539, 1597, 1767
Ama87I	CYCGRG	1 cut(s)	1762
AoxI	GGCC	7 cut(s)	438, 766, 906, 1779, 1811, 2056, 2157
ApeKI	GCWGC	1 cut(s)	1324
AspLEI	GCGC	6 cut(s)	94, 105, 1013, 1193, 1578, 1769
AspS9I	GGNCC	9 cut(s)	225, 345, 438, 766, 925, 1318, 1812, 2149, 2157
AsuC2I	CCSGG	3 cut(s)	209, 461, 1834
AsuHPI	GGTGA	5 cut(s)	376, 562, 745, 1669, 1990
AsuNHI	GCTAGC	1 cut(s)	1327
AvaI	CYCGRG	1 cut(s)	1762
AvaII	GGWCC	5 cut(s)	225, 345, 925, 1318, 2149
BaeGI	GKGCMC	1 cut(s)	2015
BalI	TGGCCA	1 cut(s)	1781
BamHI	GGATCC	1 cut(s)	160
BanI	GGYRCC	2 cut(s)	1766, 2012
BanII	GRGCYC	1 cut(s)	1989
BauI	CACGAG	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	1989
BbvCI	CCTCAGC	2 cut(s)	680, 2021
BbvI	GCAGC	1 cut(s)	1336
BccI	CCATC	6 cut(s)	407, 682, 917, 1546, 1689, 2168
BceAI	ACGGC	5 cut(s)	1194, 1669, 1890, 1978, 2071
BciVI	GTATCC	1 cut(s)	698
BcnI	CCSGG	3 cut(s)	209, 461, 1834
BcoDI	GTCTC	4 cut(s)	959, 1139, 1174, 1426
BcuI	ACTAGT	1 cut(s)	1279
BfaI	CTAG	4 cut(s)	165, 281, 1280, 1328
BfmI	CTRYAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	1770
BfuI	GTATCC	1 cut(s)	698
BisI	GCNGC	8 cut(s)	106, 565, 1080, 1110, 1325, 1332, 1927, 2070
BlpI	GCTNAGC	1 cut(s)	849
BlsI	GCNGC	8 cut(s)	107, 566, 1081, 1111, 1326, 1333, 1928, 2071
Bme18I	GGWCC	5 cut(s)	225, 345, 925, 1318, 2149
BmeRI	GACNNNNNGTC	1 cut(s)	476
BmeT110I	CYCGRG	1 cut(s)	1762
BmgBI	CACGTC	1 cut(s)	216
BmgT120I	GGNCC	9 cut(s)	225, 345, 438, 766, 925, 1318, 1812, 2149, 2157
BmiI	GGNNCC	7 cut(s)	162, 198, 274, 927, 1064, 1768, 2014
BmrI	ACTGGG	1 cut(s)	1220
BmsI	GCATC	7 cut(s)	243, 256, 375, 646, 682, 862, 2039
BmtI	GCTAGC	1 cut(s)	1331
BmuI	ACTGGG	1 cut(s)	1220
BplI	GAGNNNNNCTC	2 cut(s)	1976, 2008
BpmI	CTGGAG	1 cut(s)	941
Bpu10I	CCTNAGC	3 cut(s)	680, 1413, 2021
Bpu1102I	GCTNAGC	1 cut(s)	849
BpuMI	CCSGG	3 cut(s)	209, 461, 1834
Bsa29I	ATCGAT	1 cut(s)	642
BsaAI	YACGTR	1 cut(s)	320
BsaHI	GRCGYC	4 cut(s)	945, 1767, 1830, 2115
BsaI	GGTCTC	1 cut(s)	1174
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bse118I	RCCGGY	3 cut(s)	199, 809, 1238
Bse1I	ACTGG	4 cut(s)	949, 1064, 1226, 1440
Bse3DI	GCAATG	1 cut(s)	846
BseCI	ATCGAT	1 cut(s)	642
BseMI	GCAATG	1 cut(s)	846
BseMII	CTCAG	6 cut(s)	243, 252, 323, 694, 840, 2012
BseNI	ACTGG	4 cut(s)	949, 1064, 1226, 1440
BseRI	GAGGAG	2 cut(s)	668, 1724
BseSI	GKGCMC	1 cut(s)	2015
BseXI	GCAGC	1 cut(s)	1336
BseYI	CCCAGC	4 cut(s)	276, 560, 728, 1544
Bsh1236I	CGCG	2 cut(s)	94, 103
BshFI	GGCC	7 cut(s)	440, 768, 908, 1781, 1813, 2058, 2159
BshNI	GGYRCC	2 cut(s)	1766, 2012
BshVI	ATCGAT	1 cut(s)	642
BsiHKAI	GWGCWC	1 cut(s)	1989
BsiHKCI	CYCGRG	1 cut(s)	1762
BsiSI	CCGG	8 cut(s)	200, 209, 460, 666, 810, 1239, 1463, 1834
BslFI	GGGAC	4 cut(s)	506, 1100, 1115, 1922
BsmAI	GTCTC	4 cut(s)	959, 1139, 1174, 1426
BsmFI	GGGAC	4 cut(s)	506, 1100, 1115, 1922
BsmI	GAATGC	3 cut(s)	77, 746, 1754
BsnI	GGCC	7 cut(s)	440, 768, 908, 1781, 1813, 2058, 2159
Bso31I	GGTCTC	1 cut(s)	1174
BsoBI	CYCGRG	1 cut(s)	1762
Bsp1286I	GDGCHC	2 cut(s)	1989, 2015
Bsp143I	GATC	7 cut(s)	160, 531, 643, 714, 1560, 1602, 1772
Bsp1720I	GCTNAGC	1 cut(s)	849
BspANI	GGCC	7 cut(s)	440, 768, 908, 1781, 1813, 2058, 2159
BspCNI	CTCAG	6 cut(s)	244, 251, 322, 693, 841, 2013
BspDI	ATCGAT	1 cut(s)	642
BspFNI	CGCG	2 cut(s)	94, 103
BspHI	TCATGA	1 cut(s)	9
BspLI	GGNNCC	7 cut(s)	162, 198, 274, 927, 1064, 1768, 2014
BspOI	GCTAGC	1 cut(s)	1331
BspPI	GGATC	5 cut(s)	155, 168, 539, 1597, 1767
BspQI	GCTCTTC	1 cut(s)	1621
BspT107I	GGYRCC	2 cut(s)	1766, 2012
BspTNI	GGTCTC	1 cut(s)	1174
BsrDI	GCAATG	1 cut(s)	846
BsrFI	RCCGGY	3 cut(s)	199, 809, 1238
BsrI	ACTGG	4 cut(s)	949, 1064, 1226, 1440
BssAI	RCCGGY	3 cut(s)	199, 809, 1238
BssMI	GATC	7 cut(s)	160, 531, 643, 714, 1560, 1602, 1772
BssNI	GRCGYC	4 cut(s)	945, 1767, 1830, 2115
BssSI	CACGAG	1 cut(s)	66
BssT1I	CCWWGG	5 cut(s)	1087, 1138, 1314, 1890, 2118
Bst2BI	CACGAG	1 cut(s)	66
Bst4CI	ACNGT	7 cut(s)	124, 229, 262, 334, 1934, 1971, 2002
Bst6I	CTCTTC	2 cut(s)	168, 1621
BstACI	GRCGYC	4 cut(s)	945, 1767, 1830, 2115
BstBAI	YACGTR	1 cut(s)	320
BstC8I	GCNNGC	4 cut(s)	63, 610, 1240, 1329
BstDEI	CTNAG	8 cut(s)	221, 238, 252, 309, 680, 849, 1413, 2021
BstENI	CCTNNNNNAGG	2 cut(s)	602, 1137
BstFNI	CGCG	2 cut(s)	94, 103
BstH2I	RGCGCY	1 cut(s)	1770
BstHHI	GCGC	6 cut(s)	94, 105, 1013, 1193, 1578, 1769
BstKTI	GATC	7 cut(s)	163, 534, 646, 717, 1563, 1605, 1775
BstMAI	GTCTC	4 cut(s)	959, 1139, 1174, 1426
BstMBI	GATC	7 cut(s)	160, 531, 643, 714, 1560, 1602, 1772
BstMWI	GCNNNNNNNGC	7 cut(s)	100, 774, 845, 1172, 1436, 1749, 2036
BstNSI	RCATGY	2 cut(s)	361, 612
BstSFI	CTRYAG	1 cut(s)	87
BstSLI	GKGCMC	1 cut(s)	2015
BstUI	CGCG	2 cut(s)	94, 103
BstV1I	GCAGC	1 cut(s)	1336
BstX2I	RGATCY	4 cut(s)	160, 531, 1602, 1772
BstXI	CCANNNNNNTGG	2 cut(s)	1552, 1777
BstYI	RGATCY	4 cut(s)	160, 531, 1602, 1772
Bsu15I	ATCGAT	1 cut(s)	642
BsuI	GTATCC	1 cut(s)	698
BsuRI	GGCC	7 cut(s)	440, 768, 908, 1781, 1813, 2058, 2159
BsuTUI	ATCGAT	1 cut(s)	642
BtgZI	GCGATG	1 cut(s)	1839
BtrI	CACGTC	1 cut(s)	216
BtsIMutI	CAGTG	4 cut(s)	129, 372, 956, 1868
Cac8I	GCNNGC	4 cut(s)	63, 610, 1240, 1329
CciI	TCATGA	1 cut(s)	9
CfoI	GCGC	6 cut(s)	94, 105, 1013, 1193, 1578, 1769
Cfr10I	RCCGGY	3 cut(s)	199, 809, 1238
Cfr13I	GGNCC	9 cut(s)	225, 345, 438, 766, 925, 1318, 1812, 2149, 2157
ClaI	ATCGAT	1 cut(s)	642
CseI	GACGC	3 cut(s)	571, 1838, 2123
CsiI	ACCWGGT	1 cut(s)	1290
Csp6I	GTAC	3 cut(s)	902, 1345, 1804
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviAII	CATG	9 cut(s)	10, 110, 342, 358, 609, 685, 787, 1567, 2205
CviQI	GTAC	3 cut(s)	902, 1345, 1804
DdeI	CTNAG	8 cut(s)	221, 238, 252, 309, 680, 849, 1413, 2021
DinI	GGCGCC	1 cut(s)	1768
DpnI	GATC	7 cut(s)	162, 533, 645, 716, 1562, 1604, 1774
DpnII	GATC	7 cut(s)	160, 531, 643, 714, 1560, 1602, 1772
DriI	GACNNNNNGTC	1 cut(s)	476
EaeI	YGGCCR	2 cut(s)	1779, 2056
Eam1104I	CTCTTC	2 cut(s)	168, 1621
Eam1105I	GACNNNNNGTC	1 cut(s)	476
EarI	CTCTTC	2 cut(s)	168, 1621
EciI	GGCGGA	7 cut(s)	497, 589, 1481, 1532, 1852, 2147, 2170
Ecl136II	GAGCTC	1 cut(s)	1987
Eco130I	CCWWGG	5 cut(s)	1087, 1138, 1314, 1890, 2118
Eco24I	GRGCYC	1 cut(s)	1989
Eco31I	GGTCTC	1 cut(s)	1174
Eco47I	GGWCC	5 cut(s)	225, 345, 925, 1318, 2149
Eco53kI	GAGCTC	1 cut(s)	1987
Eco57I	CTGAAG	1 cut(s)	821
Eco88I	CYCGRG	1 cut(s)	1762
EcoICRI	GAGCTC	1 cut(s)	1987
EcoNI	CCTNNNNNAGG	2 cut(s)	602, 1137
EcoO109I	RGGNCCY	3 cut(s)	438, 766, 2149
EcoT14I	CCWWGG	5 cut(s)	1087, 1138, 1314, 1890, 2118
EcoT38I	GRGCYC	1 cut(s)	1989
EgeI	GGCGCC	1 cut(s)	1768
EheI	GGCGCC	1 cut(s)	1768
ErhI	CCWWGG	5 cut(s)	1087, 1138, 1314, 1890, 2118
FaeI	CATG	9 cut(s)	13, 113, 345, 361, 612, 688, 790, 1570, 2208
FaqI	GGGAC	4 cut(s)	506, 1100, 1115, 1922
FatI	CATG	9 cut(s)	9, 109, 341, 357, 608, 684, 786, 1566, 2204
FauI	CCCGC	3 cut(s)	636, 1197, 1643
FblI	GTMKAC	2 cut(s)	585, 942
Fnu4HI	GCNGC	8 cut(s)	106, 565, 1080, 1110, 1325, 1332, 1927, 2070
FriOI	GRGCYC	1 cut(s)	1989
Fsp4HI	GCNGC	8 cut(s)	106, 565, 1080, 1110, 1325, 1332, 1927, 2070
FspBI	CTAG	4 cut(s)	165, 281, 1280, 1328
GlaI	GCGC	6 cut(s)	93, 104, 1012, 1192, 1577, 1768
GluI	GCNGC	8 cut(s)	106, 565, 1080, 1110, 1325, 1332, 1927, 2070
GsaI	CCCAGC	4 cut(s)	280, 564, 732, 1548
GsuI	CTGGAG	1 cut(s)	941
HaeII	RGCGCY	1 cut(s)	1770
HaeIII	GGCC	7 cut(s)	440, 768, 908, 1781, 1813, 2058, 2159
HapII	CCGG	8 cut(s)	200, 209, 460, 666, 810, 1239, 1463, 1834
HgaI	GACGC	3 cut(s)	571, 1838, 2123
HhaI	GCGC	6 cut(s)	94, 105, 1013, 1193, 1578, 1769
Hin1I	GRCGYC	4 cut(s)	945, 1767, 1830, 2115
Hin1II	CATG	9 cut(s)	13, 113, 345, 361, 612, 688, 790, 1570, 2208
Hin6I	GCGC	6 cut(s)	92, 103, 1011, 1191, 1576, 1767
HinP1I	GCGC	6 cut(s)	92, 103, 1011, 1191, 1576, 1767
HincII	GTYRAC	8 cut(s)	99, 205, 586, 969, 1288, 1297, 1540, 2005
HindII	GTYRAC	8 cut(s)	99, 205, 586, 969, 1288, 1297, 1540, 2005
HinfI	GANTC	7 cut(s)	501, 984, 1271, 1421, 1459, 1510, 1674
HpaII	CCGG	8 cut(s)	200, 209, 460, 666, 810, 1239, 1463, 1834
HphI	GGTGA	5 cut(s)	376, 562, 745, 1669, 1990
Hpy166II	GTNNAC	9 cut(s)	99, 205, 586, 943, 969, 1288, 1297, 1540, 2005
Hpy188I	TCNGA	7 cut(s)	241, 470, 714, 801, 925, 1458, 2165
Hpy188III	TCNNGA	8 cut(s)	10, 118, 251, 702, 981, 993, 1214, 1487
Hpy8I	GTNNAC	9 cut(s)	99, 205, 586, 943, 969, 1288, 1297, 1540, 2005
Hpy99I	CGWCG	3 cut(s)	587, 2114, 2117
HpyAV	CCTTC	7 cut(s)	187, 417, 706, 760, 1042, 1710, 2005
HpyCH4III	ACNGT	7 cut(s)	124, 229, 262, 334, 1934, 1971, 2002
HpyCH4IV	ACGT	6 cut(s)	215, 319, 945, 1347, 1355, 1586
HpyCH4V	TGCA	9 cut(s)	234, 341, 353, 659, 724, 744, 815, 2030, 2204
HpyF10VI	GCNNNNNNNGC	7 cut(s)	100, 774, 845, 1172, 1436, 1749, 2036
HpyF3I	CTNAG	8 cut(s)	221, 238, 252, 309, 680, 849, 1413, 2021
HpySE526I	ACGT	6 cut(s)	215, 319, 945, 1347, 1355, 1586
Hsp92I	GRCGYC	4 cut(s)	945, 1767, 1830, 2115
Hsp92II	CATG	9 cut(s)	13, 113, 345, 361, 612, 688, 790, 1570, 2208
HspAI	GCGC	6 cut(s)	92, 103, 1011, 1191, 1576, 1767
KasI	GGCGCC	1 cut(s)	1766
KroI	GCCGGC	1 cut(s)	1238
KroNI	GCCGGC	1 cut(s)	1240
Kzo9I	GATC	7 cut(s)	160, 531, 643, 714, 1560, 1602, 1772
LguI	GCTCTTC	1 cut(s)	1621
LmnI	GCTCC	5 cut(s)	196, 278, 1256, 1623, 2145
Lsp1109I	GCAGC	1 cut(s)	1336
LweI	GCATC	7 cut(s)	243, 256, 375, 646, 682, 862, 2039
MabI	ACCWGGT	1 cut(s)	1290
MaeI	CTAG	4 cut(s)	165, 281, 1280, 1328
MaeII	ACGT	6 cut(s)	215, 319, 945, 1347, 1355, 1586
MaeIII	GTNAC	2 cut(s)	216, 320
MalI	GATC	7 cut(s)	162, 533, 645, 716, 1562, 1604, 1774
MboI	GATC	7 cut(s)	160, 531, 643, 714, 1560, 1602, 1772
MboII	GAAGA	9 cut(s)	185, 190, 565, 814, 1012, 1516, 1607, 1638, 1924
MflI	RGATCY	4 cut(s)	160, 531, 1602, 1772
MhlI	GDGCHC	2 cut(s)	1989, 2015
MlsI	TGGCCA	1 cut(s)	1781
MluCI	AATT	1 cut(s)	1896
MluNI	TGGCCA	1 cut(s)	1781
Mly113I	GGCGCC	1 cut(s)	1767
MlyI	GAGTC	3 cut(s)	1265, 1468, 1504
MmeI	TCCRAC	3 cut(s)	903, 1645, 2198
Mox20I	TGGCCA	1 cut(s)	1781
MroNI	GCCGGC	1 cut(s)	1238
MscI	TGGCCA	1 cut(s)	1781
MseI	TTAA	1 cut(s)	2096
MslI	CAYNNNNRTG	2 cut(s)	70, 1475
Msp20I	TGGCCA	1 cut(s)	1781
MspA1I	CMGCKG	6 cut(s)	61, 564, 649, 826, 1548, 1695
MspI	CCGG	8 cut(s)	200, 209, 460, 666, 810, 1239, 1463, 1834
Mva1269I	GAATGC	3 cut(s)	77, 746, 1754
MvnI	CGCG	2 cut(s)	94, 103
MwoI	GCNNNNNNNGC	7 cut(s)	100, 774, 845, 1172, 1436, 1749, 2036
NaeI	GCCGGC	1 cut(s)	1240
NarI	GGCGCC	1 cut(s)	1767
NciI	CCSGG	3 cut(s)	209, 461, 1834
NdeII	GATC	7 cut(s)	160, 531, 643, 714, 1560, 1602, 1772
NgoMIV	GCCGGC	1 cut(s)	1238
NheI	GCTAGC	1 cut(s)	1327
NlaIII	CATG	9 cut(s)	13, 113, 345, 361, 612, 688, 790, 1570, 2208
NlaIV	GGNNCC	7 cut(s)	162, 198, 274, 927, 1064, 1768, 2014
NmeAIII	GCCGAG	1 cut(s)	1151
NmuCI	GTSAC	2 cut(s)	216, 320
NspI	RCATGY	2 cut(s)	361, 612
OliI	CACNNNNGTG	1 cut(s)	1475
PaeI	GCATGC	1 cut(s)	612
PagI	TCATGA	1 cut(s)	9
PasI	CCCWGGG	1 cut(s)	1398
PciSI	GCTCTTC	1 cut(s)	1621
PcsI	WCGNNNNNNNCGW	1 cut(s)	2061
PctI	GAATGC	3 cut(s)	77, 746, 1754
PdiI	GCCGGC	1 cut(s)	1240
PfeI	GAWTC	4 cut(s)	501, 984, 1421, 1674
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	8 cut(s)	107, 566, 1081, 1111, 1326, 1333, 1928, 2071
PleI	GAGTC	3 cut(s)	1265, 1467, 1504
PluTI	GGCGCC	1 cut(s)	1770
PpsI	GAGTC	3 cut(s)	1265, 1467, 1504
Ppu21I	YACGTR	1 cut(s)	320
PpuMI	RGGWCCY	1 cut(s)	2149
Psp124BI	GAGCTC	1 cut(s)	1989
Psp1406I	AACGTT	2 cut(s)	1355, 1586
Psp5II	RGGWCCY	1 cut(s)	2149
PspFI	CCCAGC	4 cut(s)	276, 560, 728, 1544
PspN4I	GGNNCC	7 cut(s)	162, 198, 274, 927, 1064, 1768, 2014
PspPI	GGNCC	9 cut(s)	225, 345, 438, 766, 925, 1318, 1812, 2149, 2157
PspPPI	RGGWCCY	1 cut(s)	2149
PsuI	RGATCY	4 cut(s)	160, 531, 1602, 1772
PvuII	CAGCTG	3 cut(s)	61, 649, 1548
RsaI	GTAC	3 cut(s)	903, 1346, 1805
RsaNI	GTAC	3 cut(s)	902, 1345, 1804
RseI	CAYNNNNRTG	2 cut(s)	70, 1475
SacI	GAGCTC	1 cut(s)	1989
SalI	GTCGAC	1 cut(s)	584
SapI	GCTCTTC	1 cut(s)	1621
SaqAI	TTAA	1 cut(s)	2096
SatI	GCNGC	8 cut(s)	106, 565, 1080, 1110, 1325, 1332, 1927, 2070
Sau3AI	GATC	7 cut(s)	160, 531, 643, 714, 1560, 1602, 1772
Sau96I	GGNCC	9 cut(s)	225, 345, 438, 766, 925, 1318, 1812, 2149, 2157
SchI	GAGTC	3 cut(s)	1265, 1468, 1504
SduI	GDGCHC	2 cut(s)	1989, 2015
SexAI	ACCWGGT	1 cut(s)	1290
SfaNI	GCATC	7 cut(s)	243, 256, 375, 646, 682, 862, 2039
SfcI	CTRYAG	1 cut(s)	87
SfoI	GGCGCC	1 cut(s)	1768
SgrAI	CRCCGGYG	1 cut(s)	809
SinI	GGWCC	5 cut(s)	225, 345, 925, 1318, 2149
SmiMI	CAYNNNNRTG	2 cut(s)	70, 1475
SpeI	ACTAGT	1 cut(s)	1279
SphI	GCATGC	1 cut(s)	612
Sse9I	AATT	1 cut(s)	1896
SspDI	GGCGCC	1 cut(s)	1766
SspI	AATATT	1 cut(s)	1103
SspMI	CTAG	4 cut(s)	165, 281, 1280, 1328
SstI	GAGCTC	1 cut(s)	1989
StyI	CCWWGG	5 cut(s)	1087, 1138, 1314, 1890, 2118
TaaI	ACNGT	7 cut(s)	124, 229, 262, 334, 1934, 1971, 2002
TaiI	ACGT	6 cut(s)	218, 322, 948, 1350, 1358, 1589
TaqI	TCGA	9 cut(s)	585, 642, 654, 870, 882, 982, 1844, 2064, 2109
TasI	AATT	1 cut(s)	1896
TauI	GCSGC	7 cut(s)	108, 567, 1082, 1112, 1334, 1929, 2072
TfiI	GAWTC	4 cut(s)	501, 984, 1421, 1674
Tru1I	TTAA	1 cut(s)	2096
Tru9I	TTAA	1 cut(s)	2096
TscAI	CASTG	4 cut(s)	129, 379, 956, 1875
TseFI	GTSAC	2 cut(s)	216, 320
TseI	GCWGC	1 cut(s)	1324
Tsp45I	GTSAC	2 cut(s)	216, 320
TspGWI	ACGGA	2 cut(s)	1269, 1596
TspRI	CASTG	4 cut(s)	129, 379, 956, 1875
Van91I	CCANNNNNTGG	1 cut(s)	61
VpaK11BI	GGWCC	5 cut(s)	225, 345, 925, 1318, 2149
XagI	CCTNNNNNAGG	2 cut(s)	602, 1137
XceI	RCATGY	2 cut(s)	361, 612
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2151
XmiI	GTMKAC	2 cut(s)	585, 942
XspI	CTAG	4 cut(s)	165, 281, 1280, 1328
ZraI	GACGTC	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.