FvH4_2g11354

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000250
Physical Location & Seq
Forward (+)
9888705 .. 9889164
460 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11354.t1

Sequence Viewer

Length: 369 bp
ATGTTGAGATTGAACGCCCGGCAAAAGCCAAACGAGAAGGATGAACCCCTATCACCTTCTGCGAAGAAGATGGTCAATCGTGGCATTGACGTCTTTGATGACGAGCCATTTCTCGTCACTACACTCATCGACAATTATTTGGTCAACAGGATGTCACTCAACCACTTGGTTCCGATCAAATGGAGCTCTAAATGGGCAATTGGAATTGCTACAGATCGCACCAATTTTATTATCGTTGATGCACCGAGTTCTTACAATGCTATCCTCGGCCGCCAAGCAATCAACCGCATGCGAGCAATTATTGCTGATTTCATGCTTGTGATGAAATTCCCTACTCCGTACGACACATGCATGTACCGTTCACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

123

Amino Acids

14.06

Weight (kDa)

9.61

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica Prupe.6G166700_v2.0.a1
pyrus_communis pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis RchiOBHm_Chr5g0018261
rosa_laevigata RLG00000022447
rosa_multiflora Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa Rorug02G0381000
rosa_samantha Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
AciI CCGC 2 cut(s) 271, 286
AcoI YGGCCR 1 cut(s) 268
AcsI RAATTY 1 cut(s) 326
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 2 cut(s) 341, 356
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
Alw21I GWGCWC 1 cut(s) 188
AoxI GGCC 1 cut(s) 268
ApoI RAATTY 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 45
BanII GRGCYC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 188
BccI CCATC 1 cut(s) 64
BcnI CCSGG 1 cut(s) 19
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 19
BmsI GCATC 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 19
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 2 cut(s) 46, 156
BseX3I CGGCCG 1 cut(s) 268
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 1 cut(s) 270
BsiEI CGRYCG 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 19
BsiWI CGTACG 1 cut(s) 339
BsnI GGCC 1 cut(s) 270
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 2 cut(s) 174, 214
BspACI CCGC 2 cut(s) 271, 286
BspANI GGCC 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 2 cut(s) 174, 214
BssNI GRCGYC 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 359
BstACI GRCGYC 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 302
BstC8I GCNNGC 2 cut(s) 290, 294
BstF5I GGATG 2 cut(s) 46, 156
BstKTI GATC 2 cut(s) 177, 217
BstMBI GATC 2 cut(s) 174, 214
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNSI RCATGY 3 cut(s) 292, 351, 355
BstSCI CCNGG 1 cut(s) 17
BstSFI CTRYAG 1 cut(s) 210
BstZI CGGCCG 1 cut(s) 268
BsuRI GGCC 1 cut(s) 270
BtsCI GGATG 2 cut(s) 46, 156
Cac8I GCNNGC 2 cut(s) 290, 294
Csp6I GTAC 2 cut(s) 340, 355
CviAII CATG 4 cut(s) 289, 313, 348, 352
CviJI RGCY 4 cut(s) 28, 106, 186, 270
CviKI_1 RGCY 4 cut(s) 28, 106, 186, 270
CviQI GTAC 2 cut(s) 340, 355
DpnI GATC 2 cut(s) 176, 216
DpnII GATC 2 cut(s) 174, 214
EaeI YGGCCR 1 cut(s) 268
EagI CGGCCG 1 cut(s) 268
Ecl136II GAGCTC 1 cut(s) 186
EclXI CGGCCG 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 188
Eco52I CGGCCG 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 186
EcoT22I ATGCAT 1 cut(s) 353
EcoT38I GRGCYC 1 cut(s) 188
FaeI CATG 4 cut(s) 292, 316, 351, 355
FaiI YATR 4 cut(s) 290, 314, 349, 353
FatI CATG 4 cut(s) 288, 312, 347, 351
Fnu4HI GCNGC 1 cut(s) 271
FokI GGATG 2 cut(s) 53, 163
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 271
GluI GCNGC 1 cut(s) 271
HaeIII GGCC 1 cut(s) 270
HapII CCGG 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 4 cut(s) 292, 316, 351, 355
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HpaII CCGG 1 cut(s) 19
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 2 cut(s) 145, 362
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 1 cut(s) 363
Hpy8I GTNNAC 2 cut(s) 145, 362
HpyAV CCTTC 2 cut(s) 31, 66
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 2 cut(s) 242, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 4 cut(s) 292, 316, 351, 355
Kzo9I GATC 2 cut(s) 174, 214
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 2 cut(s) 32, 133
LweI GCATC 1 cut(s) 229
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 115, 153
MalI GATC 2 cut(s) 176, 216
MboI GATC 2 cut(s) 174, 214
MboII GAAGA 2 cut(s) 76, 79
MfeI CAATTG 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 6 cut(s) 133, 198, 204, 223, 297, 326
MnlI CCTC 1 cut(s) 275
Mph1103I ATGCAT 1 cut(s) 353
MslI CAYNNNNRTG 2 cut(s) 317, 350
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 1 cut(s) 19
MunI CAATTG 1 cut(s) 198
MwoI GCNNNNNNNGC 1 cut(s) 302
NciI CCSGG 1 cut(s) 19
NdeII GATC 2 cut(s) 174, 214
NlaIII CATG 4 cut(s) 292, 316, 351, 355
NlaIV GGNNCC 1 cut(s) 171
NmeAIII GCCGAG 1 cut(s) 246
NmuCI GTSAC 2 cut(s) 115, 153
NsiI ATGCAT 1 cut(s) 353
NspI RCATGY 3 cut(s) 292, 351, 355
PaeI GCATGC 1 cut(s) 292
Pfl23II CGTACG 1 cut(s) 339
PkrI GCNGC 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 188
PspLI CGTACG 1 cut(s) 339
PspN4I GGNNCC 1 cut(s) 171
RsaI GTAC 2 cut(s) 341, 356
RsaNI GTAC 2 cut(s) 340, 355
RseI CAYNNNNRTG 2 cut(s) 317, 350
SacI GAGCTC 1 cut(s) 188
SatI GCNGC 1 cut(s) 271
Sau3AI GATC 2 cut(s) 174, 214
ScrFI CCNGG 1 cut(s) 19
SduI GDGCHC 1 cut(s) 188
SetI ASST 3 cut(s) 58, 93, 188
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 1 cut(s) 210
SmiMI CAYNNNNRTG 2 cut(s) 317, 350
SphI GCATGC 1 cut(s) 292
Sse9I AATT 6 cut(s) 133, 198, 204, 223, 297, 326
SsiI CCGC 2 cut(s) 271, 286
SstI GAGCTC 1 cut(s) 188
StyD4I CCNGG 1 cut(s) 17
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 129
TasI AATT 6 cut(s) 133, 198, 204, 223, 297, 326
TauI GCSGC 1 cut(s) 273
TseFI GTSAC 2 cut(s) 115, 153
Tsp45I GTSAC 2 cut(s) 115, 153
TspDTI ATGAA 3 cut(s) 57, 301, 338
TspGWI ACGGA 1 cut(s) 327
XapI RAATTY 1 cut(s) 326
XceI RCATGY 3 cut(s) 292, 351, 355
ZraI GACGTC 1 cut(s) 91
Zsp2I ATGCAT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.