Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00890

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

51849 .. 53721

Gene Structure 1873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G019800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGCACTACGTATATCTGGCGGCATCATCAACTGCTGTGAGCTCAGTCCTGATTAGAAAGGACTCCGATTGCGAGTACCCAGTGTACTACGCTGGAAAAGGTTACATTGGTGCAGAATCCAAGTACCCGGACATTGAAAAAGTAGCACTGGCTCTCCTGGTCTCAGCCCGGAAGCTCAGACATTACTTCCAAGCACATTCTATCACCGTTTTCTCTAATCACCCATTGAGGCAGGAACCACCTGAACCACTAGCCGCAGATCCACCTCCGCCAAGCACTTGGCGATTATACATTGATGGAGCATCCAACAAGAAAACCAGCGGAGCCAGCATCCTGCTAATTAGCCCGGACGAACAAGTCTACGAGTACACCCTCAAGTTTGCCTTCAGGGCATCCAACAATGCCGCAGAATACGAGGCACTCATAGCAGGTCTACAGATCGCCCGGGAACTAGGGATCCAGCACCTTAGTATCTTCAGTGATTCTCAGTTGGTCATAAACCAGGTCAGCGGTAACTTCGAAGCAAAGGAGCCCCACATGTCCTCCTACCAGGCCTTGGCCCGGGCCTTAGTTCAGAGATTCACCTCCTACATTTTTACCCAAATACCGAGGGCAGAAAATGACAAGGCAGACGCCCTTGCTAAGCTCGCATCAACTTCTCCAAACCTTACCTATGGGGCCACTAAAGTCGAAATACTCGCGGGACCTAGCACTTCCAAAACGGTGTCAGAAATATTTTTGGTGGATCACAAAGCTTCATGGATGGACCCAATTTTGAAATACATAAGACTACAGCTAAGGTCAGCTCGATACACGATCATGAACGGCAAACTGTACAGAAGAGGGCATTGCTTTCCCAACCTGAAGTGTGTGACACCGGAGGAGGGTCATAAAATAATGAAGGACATTCACGTTGGTGTATGTGGTAACCATGCCGGAGCCCGATCTCTTGCACACAAGACCCTAAGGGCAGGATATTTTTGGCCAACCATGTCGGCCTTGGCTCAAACTTGGGGTTTGGAGTTGATTGGTAAACTTCCCACAGCAGTGGGACAGTTCAAATACGCCATTGTTGCTATGGACTACCAAACAAAGTGGGTAATGGCAGAACCTCTCAACATCTACTGCAGGTTTGGAGTCCCGGATACCATAGTCACGGACAATGGTACCCAGTTTGACAATGATGAGTTGAGGGCTTACACACAGAACCTGGGCACTAAGATCCTCTATGCTTCCCCGGCTCACCCCCAGACCAACGGGCAGGTCGAAGCTGTCAATAAGATAATCAAGAAAATACTGAAAAAGAAGCTTGACGAAGCCAAGGGTCTTTGGGCTGCTAAACTCCTGGAGGTGTTGTGGGCCATCAGGACCACGGCAACGGAGGCCACCGGAGAGACACCTTTCTGCATGGCTTTTGGATCAGAAGCAGTACTCCCTATTGAAACACAAATCCAAGTCCCCGGATCGAATACTTCGATGCGGGTACCAACTCAGAAGGCCTACACCTCGATGCCGATTTACTGGAGGAACGAAGAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

513

Amino Acids

57.08

Weight (kDa)

8.9

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	3 - 70	5e-09	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	4 - 74	2.7e-11	RNase H-like domain found in reverse transcriptase
RNase_H	PF00075	95 - 174	5.7e-07	RNase H
RVT_3	PF13456	99 - 217	2.8e-20	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	356
Acc36I	ACCTGC	3 cut(s)	419, 1119, 1252
Acc65I	GGTACC	2 cut(s)	1166, 1483
AccB1I	GGYRCC	2 cut(s)	1166, 1483
AccB7I	CCANNNNNTGG	1 cut(s)	556
AccI	GTMKAC	2 cut(s)	360, 433
AccII	CGCG	1 cut(s)	701
AciI	CCGC	8 cut(s)	20, 255, 269, 321, 405, 510, 701, 1480
AclWI	GGATC	7 cut(s)	254, 451, 464, 753, 1216, 1426, 1471
AcoI	YGGCCR	1 cut(s)	983
AcuI	CTGAAG	3 cut(s)	370, 460, 884
AcyI	GRCGYC	1 cut(s)	633
AfaI	GTAC	8 cut(s)	77, 86, 125, 368, 836, 1168, 1431, 1485
AfiI	CCNNNNNNNGG	3 cut(s)	556, 561, 884
AflIII	ACRYGT	1 cut(s)	537
AgsI	TTSAA	4 cut(s)	137, 778, 1060, 1442
AjnI	CCWGG	5 cut(s)	156, 501, 549, 1209, 1344
AleI	CACNNNNGTG	2 cut(s)	915, 1046
AloI	GAACNNNNNNTCC	2 cut(s)	441, 473
AluBI	AGCT	8 cut(s)	42, 175, 646, 755, 796, 806, 1271, 1309
AluI	AGCT	8 cut(s)	42, 175, 646, 755, 796, 806, 1271, 1309
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	2 cut(s)	166, 1388
AlwI	GGATC	7 cut(s)	254, 451, 464, 753, 1216, 1426, 1471
AlwNI	CAGNNNCTG	1 cut(s)	1210
Ama87I	CYCGRG	2 cut(s)	444, 561
AoxI	GGCC	9 cut(s)	552, 558, 564, 678, 983, 996, 1359, 1383, 1497
ApeKI	GCWGC	1 cut(s)	1334
Asp718I	GGTACC	2 cut(s)	1166, 1483
AspS9I	GGNCC	7 cut(s)	559, 564, 678, 704, 766, 1359, 1368
AsuHPI	GGTGA	4 cut(s)	196, 212, 574, 1235
AsuII	TTCGAA	1 cut(s)	519
AvaI	CYCGRG	2 cut(s)	444, 561
AvaII	GGWCC	3 cut(s)	704, 766, 1368
AxyI	CCTNAGG	1 cut(s)	965
BaeGI	GKGCMC	1 cut(s)	1217
BaeI	ACNNNNGTAYC	6 cut(s)	454, 487, 1137, 1150, 1170, 1183
BalI	TGGCCA	1 cut(s)	985
BamHI	GGATCC	1 cut(s)	456
BanI	GGYRCC	2 cut(s)	1166, 1483
BanII	GRGCYC	3 cut(s)	44, 534, 943
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	1321
BccI	CCATC	3 cut(s)	290, 757, 1370
BceAI	ACGGC	2 cut(s)	841, 1389
BciT130I	CCWGG	5 cut(s)	158, 503, 551, 1211, 1346
BciVI	GTATCC	1 cut(s)	1138
BcoDI	GTCTC	2 cut(s)	166, 1388
BfaI	CTAG	3 cut(s)	251, 452, 708
BfmI	CTRYAG	3 cut(s)	434, 791, 1126
BfuAI	ACCTGC	3 cut(s)	419, 1119, 1252
BfuI	GTATCC	1 cut(s)	1138
BglI	GCCNNNNNGGC	1 cut(s)	389
BisI	GCNGC	4 cut(s)	21, 255, 405, 1335
BlpI	GCTNAGC	1 cut(s)	642
BlsI	GCNGC	4 cut(s)	22, 256, 406, 1336
BmcAI	AGTACT	1 cut(s)	1431
Bme18I	GGWCC	3 cut(s)	704, 766, 1368
BmeT110I	CYCGRG	2 cut(s)	444, 561
BmgT120I	GGNCC	7 cut(s)	559, 564, 678, 704, 766, 1359, 1368
BmrI	ACTGGG	2 cut(s)	74, 1165
BmsI	GCATC	7 cut(s)	32, 311, 339, 401, 659, 1467, 1500
BmuI	ACTGGG	2 cut(s)	74, 1165
BpmI	CTGGAG	1 cut(s)	1367
Bpu10I	CCTNAGC	1 cut(s)	797
Bpu1102I	GCTNAGC	1 cut(s)	642
Bpu14I	TTCGAA	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	359
BsaAI	YACGTR	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	633
BsaI	GGTCTC	1 cut(s)	166
BsaWI	WCCGGW	2 cut(s)	877, 1388
BsaXI	ACNNNNNCTCC	6 cut(s)	138, 168, 527, 557, 1340, 1370
Bsc4I	CCNNNNNNNGG	3 cut(s)	556, 561, 884
Bse1I	ACTGG	4 cut(s)	80, 153, 1171, 1526
Bse21I	CCTNAGG	1 cut(s)	965
Bse3DI	GCAATG	1 cut(s)	847
BseBI	CCWGG	5 cut(s)	158, 503, 551, 1211, 1346
BseGI	GGATG	4 cut(s)	302, 330, 392, 768
BseLI	CCNNNNNNNGG	3 cut(s)	556, 561, 884
BseMI	GCAATG	1 cut(s)	847
BseMII	CTCAG	5 cut(s)	57, 177, 190, 500, 1505
BseNI	ACTGG	4 cut(s)	80, 153, 1171, 1526
BseRI	GAGGAG	1 cut(s)	896
BseSI	GKGCMC	1 cut(s)	1217
BseXI	GCAGC	1 cut(s)	1321
BsgI	GTGCAG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	701
BshFI	GGCC	9 cut(s)	554, 560, 566, 680, 985, 998, 1361, 1385, 1499
BshNI	GGYRCC	2 cut(s)	1166, 1483
BsiHKAI	GWGCWC	1 cut(s)	44
BsiHKCI	CYCGRG	2 cut(s)	444, 561
BslFI	GGGAC	4 cut(s)	717, 1065, 1124, 1442
BslI	CCNNNNNNNGG	3 cut(s)	556, 561, 884
BsmAI	GTCTC	2 cut(s)	166, 1388
BsmFI	GGGAC	4 cut(s)	717, 1065, 1124, 1442
BsnI	GGCC	9 cut(s)	554, 560, 566, 680, 985, 998, 1361, 1385, 1499
Bso31I	GGTCTC	1 cut(s)	166
BsoBI	CYCGRG	2 cut(s)	444, 561
Bsp119I	TTCGAA	1 cut(s)	519
Bsp1286I	GDGCHC	4 cut(s)	44, 534, 943, 1217
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	9 cut(s)	259, 438, 456, 745, 816, 944, 1221, 1418, 1463
Bsp1720I	GCTNAGC	1 cut(s)	642
BspACI	CCGC	8 cut(s)	20, 255, 269, 321, 405, 510, 701, 1480
BspANI	GGCC	9 cut(s)	554, 560, 566, 680, 985, 998, 1361, 1385, 1499
BspCNI	CTCAG	5 cut(s)	56, 176, 189, 499, 1504
BspFNI	CGCG	1 cut(s)	701
BspHI	TCATGA	1 cut(s)	819
BspMAI	CTGCAG	1 cut(s)	1130
BspMI	ACCTGC	3 cut(s)	419, 1119, 1252
BspPI	GGATC	7 cut(s)	254, 451, 464, 753, 1216, 1426, 1471
BspT104I	TTCGAA	1 cut(s)	519
BspT107I	GGYRCC	2 cut(s)	1166, 1483
BspTNI	GGTCTC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	847
BsrGI	TGTACA	1 cut(s)	834
BsrI	ACTGG	4 cut(s)	80, 153, 1171, 1526
BssMI	GATC	9 cut(s)	259, 438, 456, 745, 816, 944, 1221, 1418, 1463
BssNI	GRCGYC	1 cut(s)	633
BssT1I	CCWWGG	3 cut(s)	555, 999, 1320
Bst2UI	CCWGG	5 cut(s)	158, 503, 551, 1211, 1346
Bst4CI	ACNGT	4 cut(s)	208, 724, 834, 1056
Bst6I	CTCTTC	2 cut(s)	835, 1527
BstACI	GRCGYC	1 cut(s)	633
BstAUI	TGTACA	1 cut(s)	834
BstBAI	YACGTR	1 cut(s)	10
BstBI	TTCGAA	1 cut(s)	519
BstC8I	GCNNGC	2 cut(s)	328, 648
BstDSI	CCRYGG	1 cut(s)	1371
BstEII	GGTNACC	1 cut(s)	926
BstF5I	GGATG	4 cut(s)	302, 330, 392, 768
BstFNI	CGCG	1 cut(s)	701
BstKTI	GATC	9 cut(s)	262, 441, 459, 748, 819, 947, 1224, 1421, 1466
BstMAI	GTCTC	2 cut(s)	166, 1388
BstMBI	GATC	9 cut(s)	259, 438, 456, 745, 816, 944, 1221, 1418, 1463
BstMWI	GCNNNNNNNGC	7 cut(s)	327, 389, 425, 647, 1073, 1238, 1382
BstNI	CCWGG	5 cut(s)	158, 503, 551, 1211, 1346
BstNSI	RCATGY	1 cut(s)	541
BstPI	GGTNACC	1 cut(s)	926
BstSFI	CTRYAG	3 cut(s)	434, 791, 1126
BstSLI	GKGCMC	1 cut(s)	1217
BstSNI	TACGTA	1 cut(s)	10
BstUI	CGCG	1 cut(s)	701
BstV1I	GCAGC	1 cut(s)	1321
BstX2I	RGATCY	3 cut(s)	259, 456, 1221
BstXI	CCANNNNNNTGG	2 cut(s)	279, 1048
BstYI	RGATCY	3 cut(s)	259, 456, 1221
Bsu36I	CCTNAGG	1 cut(s)	965
BsuI	GTATCC	1 cut(s)	1138
BsuRI	GGCC	9 cut(s)	554, 560, 566, 680, 985, 998, 1361, 1385, 1499
BtgI	CCRYGG	1 cut(s)	1371
BtsCI	GGATG	4 cut(s)	302, 330, 392, 768
BtsI	GCAGTG	1 cut(s)	1053
BtsIMutI	CAGTG	4 cut(s)	87, 146, 484, 1053
BveI	ACCTGC	3 cut(s)	419, 1119, 1252
Cac8I	GCNNGC	2 cut(s)	328, 648
CaiI	CAGNNNCTG	1 cut(s)	1210
CciI	TCATGA	1 cut(s)	819
Cfr13I	GGNCC	7 cut(s)	559, 564, 678, 704, 766, 1359, 1368
Cfr9I	CCCGGG	2 cut(s)	444, 561
CseI	GACGC	1 cut(s)	641
CsiI	ACCWGGT	1 cut(s)	501
Csp6I	GTAC	8 cut(s)	76, 85, 124, 367, 835, 1167, 1430, 1484
CspCI	CAANNNNNGTGG	2 cut(s)	1076, 1111
CviAII	CATG	6 cut(s)	538, 759, 820, 932, 991, 1408
CviQI	GTAC	8 cut(s)	76, 85, 124, 367, 835, 1167, 1430, 1484
DpnI	GATC	9 cut(s)	261, 440, 458, 747, 818, 946, 1223, 1420, 1465
DpnII	GATC	9 cut(s)	259, 438, 456, 745, 816, 944, 1221, 1418, 1463
DrdI	GACNNNNNNGTC	1 cut(s)	356
DseDI	GACNNNNNNGTC	1 cut(s)	356
EaeI	YGGCCR	1 cut(s)	983
Eam1104I	CTCTTC	2 cut(s)	835, 1527
EarI	CTCTTC	2 cut(s)	835, 1527
EciI	GGCGGA	1 cut(s)	258
Ecl136II	GAGCTC	1 cut(s)	42
Eco105I	TACGTA	1 cut(s)	10
Eco130I	CCWWGG	3 cut(s)	555, 999, 1320
Eco147I	AGGCCT	2 cut(s)	554, 1499
Eco24I	GRGCYC	3 cut(s)	44, 534, 943
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	3 cut(s)	704, 766, 1368
Eco53kI	GAGCTC	1 cut(s)	42
Eco57I	CTGAAG	3 cut(s)	370, 460, 884
Eco81I	CCTNAGG	1 cut(s)	965
Eco88I	CYCGRG	2 cut(s)	444, 561
Eco91I	GGTNACC	1 cut(s)	926
EcoICRI	GAGCTC	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	704
EcoO65I	GGTNACC	1 cut(s)	926
EcoRII	CCWGG	5 cut(s)	156, 501, 549, 1209, 1344
EcoT14I	CCWWGG	3 cut(s)	555, 999, 1320
EcoT38I	GRGCYC	3 cut(s)	44, 534, 943
ErhI	CCWWGG	3 cut(s)	555, 999, 1320
FaeI	CATG	6 cut(s)	541, 762, 823, 935, 994, 1411
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	4 cut(s)	717, 1065, 1124, 1442
FatI	CATG	6 cut(s)	537, 758, 819, 931, 990, 1407
FauI	CCCGC	2 cut(s)	694, 1473
FblI	GTMKAC	2 cut(s)	360, 433
Fnu4HI	GCNGC	4 cut(s)	21, 255, 405, 1335
FokI	GGATG	4 cut(s)	289, 317, 379, 775
FriOI	GRGCYC	3 cut(s)	44, 534, 943
Fsp4HI	GCNGC	4 cut(s)	21, 255, 405, 1335
FspBI	CTAG	3 cut(s)	251, 452, 708
GluI	GCNGC	4 cut(s)	21, 255, 405, 1335
GsuI	CTGGAG	1 cut(s)	1367
HaeIII	GGCC	9 cut(s)	554, 560, 566, 680, 985, 998, 1361, 1385, 1499
HgaI	GACGC	1 cut(s)	641
Hin1I	GRCGYC	1 cut(s)	633
Hin1II	CATG	6 cut(s)	541, 762, 823, 935, 994, 1411
HindIII	AAGCTT	2 cut(s)	753, 1307
HinfI	GANTC	5 cut(s)	62, 116, 482, 579, 1137
HphI	GGTGA	4 cut(s)	196, 212, 574, 1235
Hpy166II	GTNNAC	5 cut(s)	85, 361, 369, 434, 1034
Hpy188I	TCNGA	6 cut(s)	67, 179, 576, 730, 1423, 1494
Hpy188III	TCNNGA	4 cut(s)	49, 820, 1288, 1366
Hpy8I	GTNNAC	5 cut(s)	85, 361, 369, 434, 1034
HpyAV	CCTTC	3 cut(s)	394, 895, 1489
HpyCH4III	ACNGT	4 cut(s)	208, 724, 834, 1056
HpyCH4IV	ACGT	2 cut(s)	9, 912
HpyCH4V	TGCA	5 cut(s)	4, 113, 953, 1128, 1407
HpyF10VI	GCNNNNNNNGC	7 cut(s)	327, 389, 425, 647, 1073, 1238, 1382
HpySE526I	ACGT	2 cut(s)	9, 912
Hsp92I	GRCGYC	1 cut(s)	633
Hsp92II	CATG	6 cut(s)	541, 762, 823, 935, 994, 1411
KpnI	GGTACC	2 cut(s)	1170, 1487
Kzo9I	GATC	9 cut(s)	259, 438, 456, 745, 816, 944, 1221, 1418, 1463
LmnI	GCTCC	4 cut(s)	299, 323, 529, 938
Lsp1109I	GCAGC	1 cut(s)	1321
LweI	GCATC	7 cut(s)	32, 311, 339, 401, 659, 1467, 1500
MabI	ACCWGGT	1 cut(s)	501
MaeI	CTAG	3 cut(s)	251, 452, 708
MaeII	ACGT	2 cut(s)	9, 912
MaeIII	GTNAC	5 cut(s)	101, 512, 871, 926, 1153
MalI	GATC	9 cut(s)	261, 440, 458, 747, 818, 946, 1223, 1420, 1465
MboI	GATC	9 cut(s)	259, 438, 456, 745, 816, 944, 1221, 1418, 1463
MboII	GAAGA	2 cut(s)	466, 852
MflI	RGATCY	3 cut(s)	259, 456, 1221
MhlI	GDGCHC	4 cut(s)	44, 534, 943, 1217
MlsI	TGGCCA	1 cut(s)	985
MluCI	AATT	2 cut(s)	339, 771
MluNI	TGGCCA	1 cut(s)	985
MlyI	GAGTC	2 cut(s)	56, 1146
MmeI	TCCRAC	2 cut(s)	330, 420
Mox20I	TGGCCA	1 cut(s)	985
MscI	TGGCCA	1 cut(s)	985
MslI	CAYNNNNRTG	4 cut(s)	818, 915, 1046, 1508
Msp20I	TGGCCA	1 cut(s)	985
MspA1I	CMGCKG	2 cut(s)	321, 510
MvaI	CCWGG	5 cut(s)	158, 503, 551, 1211, 1346
MvnI	CGCG	1 cut(s)	701
MwoI	GCNNNNNNNGC	7 cut(s)	327, 389, 425, 647, 1073, 1238, 1382
NdeII	GATC	9 cut(s)	259, 438, 456, 745, 816, 944, 1221, 1418, 1463
NlaIII	CATG	6 cut(s)	541, 762, 823, 935, 994, 1411
NmuCI	GTSAC	2 cut(s)	871, 1153
NspI	RCATGY	1 cut(s)	541
NspV	TTCGAA	1 cut(s)	519
OliI	CACNNNNGTG	2 cut(s)	915, 1046
PagI	TCATGA	1 cut(s)	819
PceI	AGGCCT	2 cut(s)	554, 1499
PciI	ACATGT	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	2 cut(s)	1263, 1472
PfeI	GAWTC	3 cut(s)	116, 482, 579
PflMI	CCANNNNNTGG	1 cut(s)	556
PfoI	TCCNGGA	2 cut(s)	1140, 1344
PkrI	GCNGC	4 cut(s)	22, 256, 406, 1336
PleI	GAGTC	2 cut(s)	56, 1145
PpsI	GAGTC	2 cut(s)	56, 1145
Ppu21I	YACGTR	1 cut(s)	10
PpuMI	RGGWCCY	1 cut(s)	704
PscI	ACATGT	1 cut(s)	537
Psp124BI	GAGCTC	1 cut(s)	44
Psp5II	RGGWCCY	1 cut(s)	704
Psp6I	CCWGG	5 cut(s)	156, 501, 549, 1209, 1344
PspEI	GGTNACC	1 cut(s)	926
PspGI	CCWGG	5 cut(s)	156, 501, 549, 1209, 1344
PspPI	GGNCC	7 cut(s)	559, 564, 678, 704, 766, 1359, 1368
PspPPI	RGGWCCY	1 cut(s)	704
PstI	CTGCAG	1 cut(s)	1130
PstNI	CAGNNNCTG	1 cut(s)	1210
PsuI	RGATCY	3 cut(s)	259, 456, 1221
RsaI	GTAC	8 cut(s)	77, 86, 125, 368, 836, 1168, 1431, 1485
RsaNI	GTAC	8 cut(s)	76, 85, 124, 367, 835, 1167, 1430, 1484
RseI	CAYNNNNRTG	4 cut(s)	818, 915, 1046, 1508
SacI	GAGCTC	1 cut(s)	44
SatI	GCNGC	4 cut(s)	21, 255, 405, 1335
Sau3AI	GATC	9 cut(s)	259, 438, 456, 745, 816, 944, 1221, 1418, 1463
Sau96I	GGNCC	7 cut(s)	559, 564, 678, 704, 766, 1359, 1368
ScaI	AGTACT	1 cut(s)	1431
SchI	GAGTC	2 cut(s)	56, 1146
SduI	GDGCHC	4 cut(s)	44, 534, 943, 1217
SexAI	ACCWGGT	1 cut(s)	501
SfaNI	GCATC	7 cut(s)	32, 311, 339, 401, 659, 1467, 1500
SfcI	CTRYAG	3 cut(s)	434, 791, 1126
SfuI	TTCGAA	1 cut(s)	519
SinI	GGWCC	3 cut(s)	704, 766, 1368
SmaI	CCCGGG	2 cut(s)	446, 563
SmiMI	CAYNNNNRTG	4 cut(s)	818, 915, 1046, 1508
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SnaBI	TACGTA	1 cut(s)	10
SrfI	GCCCGGGC	1 cut(s)	563
Sse9I	AATT	2 cut(s)	339, 771
SseBI	AGGCCT	2 cut(s)	554, 1499
SsiI	CCGC	8 cut(s)	20, 255, 269, 321, 405, 510, 701, 1480
SspI	AATATT	1 cut(s)	735
SspMI	CTAG	3 cut(s)	251, 452, 708
SstI	GAGCTC	1 cut(s)	44
StuI	AGGCCT	2 cut(s)	554, 1499
StyI	CCWWGG	3 cut(s)	555, 999, 1320
TaaI	ACNGT	4 cut(s)	208, 724, 834, 1056
TaiI	ACGT	2 cut(s)	12, 915
TaqI	TCGA	7 cut(s)	519, 690, 808, 1266, 1466, 1475, 1508
TasI	AATT	2 cut(s)	339, 771
TatI	WGTACW	4 cut(s)	84, 366, 834, 1429
TauI	GCSGC	3 cut(s)	23, 257, 407
TfiI	GAWTC	3 cut(s)	116, 482, 579
TscAI	CASTG	4 cut(s)	87, 153, 484, 1053
TseFI	GTSAC	2 cut(s)	871, 1153
TseI	GCWGC	1 cut(s)	1334
Tsp45I	GTSAC	2 cut(s)	871, 1153
TspDTI	ATGAA	3 cut(s)	747, 836, 914
TspGWI	ACGGA	2 cut(s)	1172, 1394
TspMI	CCCGGG	2 cut(s)	444, 561
TspRI	CASTG	4 cut(s)	87, 153, 484, 1053
Van91I	CCANNNNNTGG	1 cut(s)	556
VpaK11BI	GGWCC	3 cut(s)	704, 766, 1368
XceI	RCATGY	1 cut(s)	541
XcmI	CCANNNNNNNNNTGG	2 cut(s)	997, 1075
XmaI	CCCGGG	2 cut(s)	444, 561
XmiI	GTMKAC	2 cut(s)	360, 433
XspI	CTAG	3 cut(s)	251, 452, 708
ZrmI	AGTACT	1 cut(s)	1431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.