Rh3BG335500

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000250
Physical Location & Seq
Reverse (-)
35596565 .. 35596804
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG335500.1

Sequence Viewer

Length: 240 bp
ATGTGGAACGCTGAATGCAAAGAAGCTTATTTGAGGGTTCAGCAACTCATCACCAAGCTCCCCACCATGAAAGCACCAACTCCAGGCGTCCCCTTAAAAGTGTATTTGGCCTCCACTAATGCAGCAGTAGGAGCATTATTAGCACAAGATGGTGAAGCTAGTGAAGAATTTCCTATTTACAATGTAAGCAAGCTTTTGAGAGGAGCTGAAACACGCTACCCTAAGGCAGAAAGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

79

Amino Acids

8.72

Weight (kDa)

8.82

Isoelectric Point (pI)

31.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 2 - 78 1.5e-12 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica Prupe.6G166700_v2.0.a1
pyrus_communis pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis RchiOBHm_Chr5g0018261
rosa_laevigata RLG00000022447
rosa_multiflora Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa Rorug02G0381000
rosa_samantha Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 167
AcyI GRCGYC 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 83
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 5 cut(s) 26, 58, 158, 193, 206
AluI AGCT 5 cut(s) 26, 58, 158, 193, 206
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 43, 164
AxyI CCTNAGG 1 cut(s) 222
BbvI GCAGC 1 cut(s) 134
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 84
BfaI CTAG 1 cut(s) 159
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 84
BpmI CTGGAG 1 cut(s) 66
BsaHI GRCGYC 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse21I CCTNAGG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 83
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 134
BshFI GGCC 1 cut(s) 110
BslFI GGGAC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 74
BsmI GAATGC 1 cut(s) 20
BsnI GGCC 1 cut(s) 110
BspANI GGCC 1 cut(s) 110
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 84
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 222
BstMWI GCNNNNNNNGC 2 cut(s) 131, 140
BstNI CCWGG 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 82
BstV1I GCAGC 1 cut(s) 134
Bsu36I CCTNAGG 1 cut(s) 222
BsuRI GGCC 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 191
CseI GACGC 1 cut(s) 76
CviAII CATG 1 cut(s) 67
CviJI RGCY 6 cut(s) 26, 58, 110, 158, 193, 206
CviKI_1 RGCY 6 cut(s) 26, 58, 110, 158, 193, 206
DdeI CTNAG 1 cut(s) 222
Eco81I CCTNAGG 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 82
FaeI CATG 1 cut(s) 70
FaiI YATR 1 cut(s) 68
FaqI GGGAC 1 cut(s) 74
FatI CATG 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 1 cut(s) 159
GluI GCNGC 1 cut(s) 123
GsuI CTGGAG 1 cut(s) 66
HaeIII GGCC 1 cut(s) 110
HgaI GACGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 1 cut(s) 70
HindIII AAGCTT 2 cut(s) 24, 191
HphI GGTGA 2 cut(s) 43, 164
HpyCH4V TGCA 2 cut(s) 18, 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 140
HpyF3I CTNAG 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 1 cut(s) 70
LmnI GCTCC 3 cut(s) 63, 131, 203
LpnPI CCDG 2 cut(s) 69, 96
Lsp1109I GCAGC 1 cut(s) 134
MaeI CTAG 1 cut(s) 159
MboII GAAGA 1 cut(s) 176
MluCI AATT 1 cut(s) 167
MnlI CCTC 3 cut(s) 27, 121, 194
MroXI GAANNNNTTC 1 cut(s) 168
MseI TTAA 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 20
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 131, 140
NlaIII CATG 1 cut(s) 70
PctI GAATGC 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 168
PkrI GCNGC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 1 cut(s) 123
ScrFI CCNGG 1 cut(s) 84
SetI ASST 5 cut(s) 28, 60, 160, 195, 208
SgeI CNNG 8 cut(s) 67, 79, 95, 96, 158, 171, 202, 225
Sse9I AATT 1 cut(s) 167
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 82
TasI AATT 1 cut(s) 167
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TseI GCWGC 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 83
XapI RAATTY 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.