Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

48767487 .. 48769232

Gene Structure 1746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G029990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGCAAAACCCTGAACACTCGGGGCACCTCAGCAAGTGGGCCATTGAGCTCAGCGAGTTCGACATAGACTACAGGCCAAGAACCACCATGAAGGGCCAGGTAGTGGCGGACTTTATCGCTGAACTCACCGAGCGTCAACCAGACCCCGGTACCGAGACTGGGCCTGGAACGGAAATGGTAACCGCTGAGGAAGCAACTCCTCTACACTCGGATTGGAACCTGCATATGGACGGCTCCGCTAGCGCCAAGGCCAGCGGCGCTGGAGTCATCTTGACAGGACCAGGGGGACTAAACGCGGAGTACGCATTGAAATTCAACTTCAAGGCTTCAAACAATATGGCGAAGTACGAAGCAATCATTGCCGGCCTACTCCTTGCCATCGACTCGGGTGCTGACAGCGTCAACATATTTAGCGACTCTCAATTAGTCGTTAACCAGGTCAACGACAGCTTCCAAGCCAAGGACAAGCAGTTAGCGGCATATTTGGGGTACGTCAAAACGCTGCTTAAAAAGTTCAAATTTCACACCATCACACAAATCCCCAGGGAAAGGAACGCCAAAGCTGATTCACTGGCGAGACTGGCAACCGCCCAGCCACATCAAAGTCCAATGGACACAAGAGTGGAATGCCTTGACAGGCCAAGTATCACAAAGACACTGGCGGAGATCTTCAGCATTGAGATCAGTCCCAGCTGGATGGACGAGATCATCGCATACAAGCGCAGCGGCACATTACCGGAGGATAAGGCGGAGCCACTGACGGCAATAACTACCACCAAGGTAATTCACTTCCTCTGGAAGAACATCTACTGTCGCTATGGTGTCCCACATACAATCATTACAGACAACGGCACGCAGTTCAACAACAAGGAACTTATCTCCTTCACCTCCAACTTGGGCACCAAATTGAGTTTTGCATCTGTCGTCCATCCCCAAACCAACGGCCAAATTGAAGCAGCAAACAAGATAATCAAGAAATTGCTAAAAAAGAAGCTCGACGACGCCAAGGGTTTGTGGGCGGAGAAGCTTCCAGAAGTTCTATGGGCCATCCGCACAACTCTAACCTCCGCCACCGGCGAAACACCCTTTTGTATGATGTTCGAAACAGGGGCTGTCCTACCTGTTGAGGTAACTCAACCTACCGCCAGGGTCGAAGGTTACCGCCCAGAGACCAACAGCGACGGCATCAACCTGGACAGGGACCTCCTAGAAGAGAAAAGACACAAGGCTCACTTGCATAACTTGCAAAACAAACAGCGAGTATCGCGTTTCTACAACGCCAGAGTCAAGGCCCAGAACCTCCAATTGGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

438

Amino Acids

48.64

Weight (kDa)

6.65

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	77 - 194	1.3e-18	Reverse transcriptase-like
rve	PF00665	256 - 311	7.4e-06	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	228
Acc65I	GGTACC	1 cut(s)	149
AccB1I	GGYRCC	3 cut(s)	24, 149, 899
AccB7I	CCANNNNNTGG	1 cut(s)	103
AccII	CGCG	2 cut(s)	296, 1267
AcoI	YGGCCR	1 cut(s)	943
AcsI	RAATTY	2 cut(s)	311, 518
AcuI	CTGAAG	1 cut(s)	655
AcyI	GRCGYC	1 cut(s)	1002
AfaI	GTAC	4 cut(s)	151, 302, 347, 491
AfiI	CCNNNNNNNGG	9 cut(s)	103, 146, 159, 226, 460, 549, 1198, 1306, 1309
AgsI	TTSAA	7 cut(s)	310, 316, 322, 330, 517, 862, 953
AjnI	CCWGG	7 cut(s)	96, 163, 280, 435, 542, 1145, 1191
AjuI	GAANNNNNNNTTGG	1 cut(s)	1289
AleI	CACNNNNGTG	1 cut(s)	620
AluBI	AGCT	6 cut(s)	49, 450, 563, 693, 994, 1027
AluI	AGCT	6 cut(s)	49, 450, 563, 693, 994, 1027
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	3 cut(s)	149, 571, 1163
AlwNI	CAGNNNCTG	1 cut(s)	1112
Ama87I	CYCGRG	2 cut(s)	19, 385
ApeKI	GCWGC	3 cut(s)	502, 723, 956
ApoI	RAATTY	2 cut(s)	311, 518
Asp718I	GGTACC	1 cut(s)	149
AspLEI	GCGC	3 cut(s)	245, 260, 723
AspS9I	GGNCC	7 cut(s)	39, 94, 161, 278, 1044, 1201, 1291
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	118, 877
AsuII	TTCGAA	1 cut(s)	1101
AsuNHI	GCTAGC	1 cut(s)	239
AvaI	CYCGRG	2 cut(s)	19, 385
AvaII	GGWCC	2 cut(s)	278, 1201
BaeGI	GKGCMC	2 cut(s)	27, 902
BaeI	ACNNNNGTAYC	2 cut(s)	133, 166
BanI	GGYRCC	3 cut(s)	24, 149, 899
BanII	GRGCYC	1 cut(s)	51
BarI	GAAGNNNNNNTAC	2 cut(s)	791, 823
Bbv12I	GWGCWC	1 cut(s)	51
BbvCI	CCTCAGC	2 cut(s)	29, 186
BbvI	GCAGC	3 cut(s)	489, 735, 968
BccI	CCATC	5 cut(s)	386, 536, 691, 936, 1055
BceAI	ACGGC	5 cut(s)	247, 777, 865, 958, 1198
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BciT130I	CCWGG	7 cut(s)	98, 165, 282, 437, 544, 1147, 1193
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	3 cut(s)	149, 571, 1163
BfaI	CTAG	2 cut(s)	240, 1208
BfmI	CTRYAG	1 cut(s)	70
BfoI	RGCGCY	2 cut(s)	246, 261
BfuAI	ACCTGC	1 cut(s)	228
BglII	AGATCT	1 cut(s)	666
BisI	GCNGC	6 cut(s)	256, 477, 503, 724, 727, 957
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	6 cut(s)	257, 478, 504, 725, 728, 958
Bme1390I	CCNGG	8 cut(s)	98, 147, 165, 282, 437, 544, 1147, 1193
Bme18I	GGWCC	2 cut(s)	278, 1201
BmeT110I	CYCGRG	2 cut(s)	19, 385
BmgT120I	GGNCC	7 cut(s)	39, 94, 161, 278, 1044, 1201, 1291
BmiI	GGNNCC	7 cut(s)	26, 151, 218, 235, 753, 901, 1202
BmrFI	CCNGG	8 cut(s)	98, 147, 165, 282, 437, 544, 1147, 1193
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	2 cut(s)	926, 1194
BmtI	GCTAGC	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	282
Bpu10I	CCTNAGC	2 cut(s)	29, 186
Bpu1102I	GCTNAGC	1 cut(s)	50
Bpu14I	TTCGAA	1 cut(s)	1101
BpuMI	CCSGG	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	1002
BsaI	GGTCTC	1 cut(s)	1163
BsaJI	CCNNGG	9 cut(s)	145, 246, 281, 459, 542, 543, 777, 1005, 1146
BsaWI	WCCGGW	1 cut(s)	736
Bsc4I	CCNNNNNNNGG	9 cut(s)	103, 146, 159, 226, 460, 549, 1198, 1306, 1309
Bse118I	RCCGGY	2 cut(s)	362, 1073
Bse1I	ACTGG	4 cut(s)	163, 576, 585, 663
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	7 cut(s)	98, 165, 282, 437, 544, 1147, 1193
BseDI	CCNNGG	9 cut(s)	145, 246, 281, 459, 542, 543, 777, 1005, 1146
BseGI	GGATG	3 cut(s)	702, 928, 1047
BseLI	CCNNNNNNNGG	9 cut(s)	103, 146, 159, 226, 460, 549, 1198, 1306, 1309
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	3 cut(s)	43, 64, 177
BseNI	ACTGG	4 cut(s)	163, 576, 585, 663
BseRI	GAGGAG	1 cut(s)	189
BseSI	GKGCMC	2 cut(s)	27, 902
BseXI	GCAGC	3 cut(s)	489, 735, 968
BseYI	CCCAGC	2 cut(s)	591, 689
Bsh1236I	CGCG	2 cut(s)	296, 1267
BshNI	GGYRCC	3 cut(s)	24, 149, 899
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	2 cut(s)	19, 385
BsiSI	CCGG	4 cut(s)	147, 363, 737, 1074
BslFI	GGGAC	4 cut(s)	300, 672, 809, 1214
BslI	CCNNNNNNNGG	9 cut(s)	103, 146, 159, 226, 460, 549, 1198, 1306, 1309
BsmAI	GTCTC	3 cut(s)	149, 571, 1163
BsmFI	GGGAC	4 cut(s)	300, 672, 809, 1214
BsmI	GAATGC	1 cut(s)	632
Bso31I	GGTCTC	1 cut(s)	1163
BsoBI	CYCGRG	2 cut(s)	19, 385
Bsp119I	TTCGAA	1 cut(s)	1101
Bsp1286I	GDGCHC	3 cut(s)	27, 51, 902
Bsp143I	GATC	3 cut(s)	666, 681, 705
Bsp1720I	GCTNAGC	1 cut(s)	50
BspCNI	CTCAG	3 cut(s)	42, 63, 178
BspFNI	CGCG	2 cut(s)	296, 1267
BspLI	GGNNCC	7 cut(s)	26, 151, 218, 235, 753, 901, 1202
BspMI	ACCTGC	1 cut(s)	228
BspOI	GCTAGC	1 cut(s)	243
BspT104I	TTCGAA	1 cut(s)	1101
BspT107I	GGYRCC	3 cut(s)	24, 149, 899
BspTNI	GGTCTC	1 cut(s)	1163
BsrDI	GCAATG	1 cut(s)	357
BsrFI	RCCGGY	2 cut(s)	362, 1073
BsrI	ACTGG	4 cut(s)	163, 576, 585, 663
BssAI	RCCGGY	2 cut(s)	362, 1073
BssECI	CCNNGG	9 cut(s)	145, 246, 281, 459, 542, 543, 777, 1005, 1146
BssMI	GATC	3 cut(s)	666, 681, 705
BssNI	GRCGYC	1 cut(s)	1002
BssT1I	CCWWGG	4 cut(s)	246, 459, 777, 1005
Bst2UI	CCWGG	7 cut(s)	98, 165, 282, 437, 544, 1147, 1193
Bst4CI	ACNGT	1 cut(s)	812
Bst6I	CTCTTC	1 cut(s)	1206
BstACI	GRCGYC	1 cut(s)	1002
BstAPI	GCANNNNNTGC	2 cut(s)	359, 1243
BstBI	TTCGAA	1 cut(s)	1101
BstC8I	GCNNGC	4 cut(s)	241, 253, 364, 854
BstDEI	CTNAG	3 cut(s)	29, 50, 186
BstEII	GGTNACC	2 cut(s)	178, 1157
BstF5I	GGATG	3 cut(s)	702, 928, 1047
BstFNI	CGCG	2 cut(s)	296, 1267
BstH2I	RGCGCY	2 cut(s)	246, 261
BstHHI	GCGC	3 cut(s)	245, 260, 723
BstKTI	GATC	3 cut(s)	669, 684, 708
BstMAI	GTCTC	3 cut(s)	149, 571, 1163
BstMBI	GATC	3 cut(s)	666, 681, 705
BstMWI	GCNNNNNNNGC	8 cut(s)	191, 240, 257, 302, 359, 581, 1243, 1264
BstNI	CCWGG	7 cut(s)	98, 165, 282, 437, 544, 1147, 1193
BstPI	GGTNACC	2 cut(s)	178, 1157
BstSCI	CCNGG	8 cut(s)	96, 145, 163, 280, 435, 542, 1145, 1191
BstSFI	CTRYAG	1 cut(s)	70
BstSLI	GKGCMC	2 cut(s)	27, 902
BstUI	CGCG	2 cut(s)	296, 1267
BstV1I	GCAGC	3 cut(s)	489, 735, 968
BstX2I	RGATCY	1 cut(s)	666
BstXI	CCANNNNNNTGG	1 cut(s)	697
BstYI	RGATCY	1 cut(s)	666
BtgZI	GCGATG	1 cut(s)	694
BtsCI	GGATG	3 cut(s)	702, 928, 1047
BtsIMutI	CAGTG	3 cut(s)	569, 656, 755
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	4 cut(s)	241, 253, 364, 854
CaiI	CAGNNNCTG	1 cut(s)	1112
CfoI	GCGC	3 cut(s)	245, 260, 723
Cfr10I	RCCGGY	2 cut(s)	362, 1073
Cfr13I	GGNCC	7 cut(s)	39, 94, 161, 278, 1044, 1201, 1291
CseI	GACGC	3 cut(s)	122, 388, 1010
CsiI	ACCWGGT	1 cut(s)	435
Csp6I	GTAC	4 cut(s)	150, 301, 346, 490
CviAII	CATG	1 cut(s)	88
CviQI	GTAC	4 cut(s)	150, 301, 346, 490
DdeI	CTNAG	3 cut(s)	29, 50, 186
DpnI	GATC	3 cut(s)	668, 683, 707
DpnII	GATC	3 cut(s)	666, 681, 705
EaeI	YGGCCR	1 cut(s)	943
Eam1104I	CTCTTC	1 cut(s)	1206
EarI	CTCTTC	1 cut(s)	1206
EciI	GGCGGA	5 cut(s)	122, 677, 764, 1034, 1057
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	4 cut(s)	246, 459, 777, 1005
Eco24I	GRGCYC	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	1163
Eco47I	GGWCC	2 cut(s)	278, 1201
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	655
Eco88I	CYCGRG	2 cut(s)	19, 385
Eco91I	GGTNACC	2 cut(s)	178, 1157
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	1201
EcoO65I	GGTNACC	2 cut(s)	178, 1157
EcoRII	CCWGG	7 cut(s)	96, 163, 280, 435, 542, 1145, 1191
EcoT14I	CCWWGG	4 cut(s)	246, 459, 777, 1005
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	4 cut(s)	246, 459, 777, 1005
FaeI	CATG	1 cut(s)	91
FalI	AAGNNNNNCTT	2 cut(s)	1217, 1249
FaqI	GGGAC	4 cut(s)	300, 672, 809, 1214
FatI	CATG	1 cut(s)	87
FauNDI	CATATG	1 cut(s)	225
Fnu4HI	GCNGC	6 cut(s)	256, 477, 503, 724, 727, 957
FokI	GGATG	3 cut(s)	709, 915, 1034
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	6 cut(s)	256, 477, 503, 724, 727, 957
FspBI	CTAG	2 cut(s)	240, 1208
GlaI	GCGC	3 cut(s)	244, 259, 722
GluI	GCNGC	6 cut(s)	256, 477, 503, 724, 727, 957
GsaI	CCCAGC	2 cut(s)	595, 693
GsuI	CTGGAG	1 cut(s)	282
HaeII	RGCGCY	2 cut(s)	246, 261
HapII	CCGG	4 cut(s)	147, 363, 737, 1074
HgaI	GACGC	3 cut(s)	122, 388, 1010
HhaI	GCGC	3 cut(s)	245, 260, 723
Hin1I	GRCGYC	1 cut(s)	1002
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	3 cut(s)	243, 258, 721
HinP1I	GCGC	3 cut(s)	243, 258, 721
HincII	GTYRAC	4 cut(s)	137, 403, 433, 442
HindII	GTYRAC	4 cut(s)	137, 403, 433, 442
HindIII	AAGCTT	1 cut(s)	1025
HinfI	GANTC	5 cut(s)	264, 383, 416, 566, 1284
HpaI	GTTAAC	1 cut(s)	433
HpaII	CCGG	4 cut(s)	147, 363, 737, 1074
HphI	GGTGA	2 cut(s)	118, 877
Hpy166II	GTNNAC	4 cut(s)	137, 403, 433, 442
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	4 cut(s)	271, 796, 973, 1031
Hpy8I	GTNNAC	4 cut(s)	137, 403, 433, 442
Hpy99I	CGWCG	3 cut(s)	1001, 1004, 1184
HpyAV	CCTTC	3 cut(s)	85, 892, 1148
HpyCH4III	ACNGT	1 cut(s)	812
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	5 cut(s)	4, 223, 917, 1237, 1246
HpyF10VI	GCNNNNNNNGC	8 cut(s)	191, 240, 257, 302, 359, 581, 1243, 1264
HpyF3I	CTNAG	3 cut(s)	29, 50, 186
HpySE526I	ACGT	1 cut(s)	492
Hsp92I	GRCGYC	1 cut(s)	1002
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	3 cut(s)	243, 258, 721
KpnI	GGTACC	1 cut(s)	153
KroI	GCCGGC	1 cut(s)	362
KroNI	GCCGGC	1 cut(s)	364
KspAI	GTTAAC	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	666, 681, 705
LmnI	GCTCC	2 cut(s)	239, 751
Lsp1109I	GCAGC	3 cut(s)	489, 735, 968
LweI	GCATC	2 cut(s)	926, 1194
MabI	ACCWGGT	1 cut(s)	435
MaeI	CTAG	2 cut(s)	240, 1208
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	3 cut(s)	178, 1129, 1157
MalI	GATC	3 cut(s)	668, 683, 707
MboI	GATC	3 cut(s)	666, 681, 705
MboII	GAAGA	3 cut(s)	661, 811, 1223
MfeI	CAATTG	1 cut(s)	1304
MflI	RGATCY	1 cut(s)	666
MhlI	GDGCHC	3 cut(s)	27, 51, 902
MluCI	AATT	8 cut(s)	311, 422, 518, 783, 905, 948, 977, 1304
MlyI	GAGTC	4 cut(s)	273, 377, 410, 1293
MmeI	TCCRAC	1 cut(s)	915
MroNI	GCCGGC	1 cut(s)	362
MseI	TTAA	2 cut(s)	432, 507
MslI	CAYNNNNRTG	1 cut(s)	620
MspA1I	CMGCKG	4 cut(s)	185, 255, 693, 726
MspI	CCGG	4 cut(s)	147, 363, 737, 1074
MspR9I	CCNGG	8 cut(s)	98, 147, 165, 282, 437, 544, 1147, 1193
MunI	CAATTG	1 cut(s)	1304
Mva1269I	GAATGC	1 cut(s)	632
MvaI	CCWGG	7 cut(s)	98, 165, 282, 437, 544, 1147, 1193
MvnI	CGCG	2 cut(s)	296, 1267
MwoI	GCNNNNNNNGC	8 cut(s)	191, 240, 257, 302, 359, 581, 1243, 1264
NaeI	GCCGGC	1 cut(s)	364
NciI	CCSGG	1 cut(s)	147
NdeI	CATATG	1 cut(s)	225
NdeII	GATC	3 cut(s)	666, 681, 705
NgoMIV	GCCGGC	1 cut(s)	362
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	7 cut(s)	26, 151, 218, 235, 753, 901, 1202
NspV	TTCGAA	1 cut(s)	1101
OliI	CACNNNNGTG	1 cut(s)	620
PasI	CCCWGGG	1 cut(s)	543
PctI	GAATGC	1 cut(s)	632
PdiI	GCCGGC	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	566
PflFI	GACNNNGTC	1 cut(s)	398
PflMI	CCANNNNNTGG	1 cut(s)	103
PkrI	GCNGC	6 cut(s)	257, 478, 504, 725, 728, 958
PleI	GAGTC	4 cut(s)	272, 377, 410, 1292
PpsI	GAGTC	4 cut(s)	272, 377, 410, 1292
PpuMI	RGGWCCY	1 cut(s)	1201
Psp124BI	GAGCTC	1 cut(s)	51
Psp5II	RGGWCCY	1 cut(s)	1201
Psp6I	CCWGG	7 cut(s)	96, 163, 280, 435, 542, 1145, 1191
PspEI	GGTNACC	2 cut(s)	178, 1157
PspFI	CCCAGC	2 cut(s)	591, 689
PspGI	CCWGG	7 cut(s)	96, 163, 280, 435, 542, 1145, 1191
PspN4I	GGNNCC	7 cut(s)	26, 151, 218, 235, 753, 901, 1202
PspPI	GGNCC	7 cut(s)	39, 94, 161, 278, 1044, 1201, 1291
PspPPI	RGGWCCY	1 cut(s)	1201
PstNI	CAGNNNCTG	1 cut(s)	1112
PsuI	RGATCY	1 cut(s)	666
PsyI	GACNNNGTC	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	693
RsaI	GTAC	4 cut(s)	151, 302, 347, 491
RsaNI	GTAC	4 cut(s)	150, 301, 346, 490
RseI	CAYNNNNRTG	1 cut(s)	620
SacI	GAGCTC	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	432, 507
SatI	GCNGC	6 cut(s)	256, 477, 503, 724, 727, 957
Sau3AI	GATC	3 cut(s)	666, 681, 705
Sau96I	GGNCC	7 cut(s)	39, 94, 161, 278, 1044, 1201, 1291
SchI	GAGTC	4 cut(s)	273, 377, 410, 1293
ScrFI	CCNGG	8 cut(s)	98, 147, 165, 282, 437, 544, 1147, 1193
SduI	GDGCHC	3 cut(s)	27, 51, 902
SexAI	ACCWGGT	1 cut(s)	435
SfaNI	GCATC	2 cut(s)	926, 1194
SfcI	CTRYAG	1 cut(s)	70
SfuI	TTCGAA	1 cut(s)	1101
SgrAI	CRCCGGYG	1 cut(s)	1073
SinI	GGWCC	2 cut(s)	278, 1201
SmiMI	CAYNNNNRTG	1 cut(s)	620
Sse9I	AATT	8 cut(s)	311, 422, 518, 783, 905, 948, 977, 1304
SspMI	CTAG	2 cut(s)	240, 1208
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	8 cut(s)	96, 145, 163, 280, 435, 542, 1145, 1191
StyI	CCWWGG	4 cut(s)	246, 459, 777, 1005
TaaI	ACNGT	1 cut(s)	812
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	5 cut(s)	60, 381, 996, 1101, 1152
TasI	AATT	8 cut(s)	311, 422, 518, 783, 905, 948, 977, 1304
TauI	GCSGC	3 cut(s)	258, 479, 729
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	2 cut(s)	432, 507
Tru9I	TTAA	2 cut(s)	432, 507
TscAI	CASTG	3 cut(s)	576, 663, 762
TseI	GCWGC	3 cut(s)	502, 723, 956
TspDTI	ATGAA	1 cut(s)	104
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	3 cut(s)	576, 663, 762
Tth111I	GACNNNGTC	1 cut(s)	398
Van91I	CCANNNNNTGG	1 cut(s)	103
VpaK11BI	GGWCC	2 cut(s)	278, 1201
XapI	RAATTY	2 cut(s)	311, 518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1038
XspI	CTAG	2 cut(s)	240, 1208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.