Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

42591267 .. 42594832

Gene Structure 3566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G019330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3480 bp

ATGGCGGAGGTGCACACGGAGTTCATTATCGTCGACTGTCCCAGTTCGTACAACGCCATCATTGGTCGACCAGCGCTTAATAAGCTCAAGTGCATCATTGCCGGATACATGCTTCTCATGAAGTTCCCCACGCCCAACGGCACAGGCTGTGTGAGGGGAAGCCAACAGCTGGCACGAGAATGCTATTCAACAACTGTAGCGCGGTCGACGCGCCGCCATGAAATCCTGACAGTGGGTAATGACCCGCCACCACCGAATATCTTTGAGGATCCTAGAGATGAAGAGAAGAAATATGTAATGAAGGAGCCGGTCAACCCGGACACGTCGCTTAAGGTCGTCTGCATCTCAGACGAGCATCCTGAGAGGACAGTCCGCATAGGCGCCCAGCTAGACCCAGAAGTGGAGGCAGAACTCACTCAGTTCTTACGTGACAACGCCACCGTCTTTGCATGGTCCTATGCAGACATGCCTGGCATCTCCACTGAAATAATCACCCATAAGCTGACCATCAAACCTTCCTTCTATCCCATCAAGCAGAAGCGGAGGGCCTTTGATGAGGAAAAATACCGGGCAATCGGACAGGAGGTCGCCAAACTACGGGACATTGGATTCATCCGCCAGGTCATCTACCCTCAGTGGATCTCAAATCTGGTAATGGTGAAAAAGCCCAGCGGCAAGTGGCGGATGTGCGTCGACTTCAAAAATCTAAACAAGGCATGCCCAAAGGATAGTTTCCCGCTACCTCGTATCGATCAGCTGGTCGATGCAACCGCCGGACACGAACTCCTCAGCATGATGGATGCCTTCTCCGGATACAATCAGATCAAAATGCACCCCAGCGACCAAGAATGCACCACCTTCACCACCGACAAAGGCCTCTACTGCTACAATGTCATGCCTTTTGGTCTGAAGAACGCCGGTGCAACTTATCAGCGGTTGATGAACGCCATGTTCGCTGAGCATCTGGGAAAAATTATCGAGGTCTATGTGGATGACATGCTAGTTAAGAGCATAAAAGCCAGTGGACATGTGGCAAATCTCAGGATCATAGTAACAATCCTCCTGGCCTATGGTATGCGCCTCAACCCAGAAAAATGTTTCTTTGCAGTCACCGCCAGCAAATTTCTGGGTTACATCGTCAGCGAGCGAGGAATCGAGGCTAACCCAGACAAGGTACAGGCCATCCTTAACCTGTCGGACCCGAAGTATAAGGTAGACGTCCAGTGTCTCCAAGGCAAGTTAACCGCCCTTTCTCGATTCATCTCTCGACTTACGGACAAGTGCGCCCCATTCTTCAAACTCCTCAAAACAACTCACAAGAAGGTCATCGACTGGAACCCAGAGTGTCAGGCGGCGTTCCAGAGCCTGAAAGAATATCTAGCGGCGGTCCCTCTCCTTTCTGTCCCTGTGCAAGGAGAGACGCTATTCATATACCTGGCGGTCTCGGCAACTGCAATAAGTTGCGCCATTGTTCGGCGGGAAGGCCAGGATGAACTCCCGGTATTTTACGCCGGCAGAGGTATGAACGGAGCAGAAACAAGGTATCCACCGTTGGAACAGCTGGCGCTTGCACTTATCGTTGCCGCCAGACGCCTCCGGCAATATTTCCAGGCTCACACGATCCATGTGTTGACCAATCAACCGCTGAGACAGGTGATGCAAAACCCTGAACACTCGGGGCGACTCAGTAAGTGGGCGATTGAGCTCAGCGAATTTGACATCGAGTACAAGCCAAGAACCGCCATGAAGGGCCAGGCAGTAGCAGACTTCATCGCTGAACTTACTGAGCGTCAGCCGGAACCCGATACTCAAGCACAGCCCGGAACAGAAATAGTAACCAGTACAGGGGTAACTACCCCACAGTCAGATTGGGACCTACATGTGGACGGCTCCGCCTGCGCCAAGGCCAGCGGCGCCGGAGTCATCTTAACCGGACCCGGGGGACTGAACGCAGAGAGCCGACAGCGTCAACATATTAGCGACTCCCAACTAGTCGTCAACCAGGTCAACGACAGCTTCCAAGCCAAGGACCAGCAGTTAGCAGCATATTTGGGGTACGTCAAAACGTTGCTAAAAAAGTTCAAATTTCATACAATCACACAGATCCCCAGGGAAAAGAACGCTAAGGCTGATTCACTGGCGAGACTGGCAACCGCCCAACCACATCAGAGTCCAGCGGACACAAGGGTGGAGTGCCTGGACAAGCCAAGTATCACAAAGACCCTGGCGGAAATCTTCAACGTTCAGGTTAACCCCAGCTGGATGGACGAGATCATTACATATAAGCGCAACGGAACGTTGCCAGAAGATAAGGTCCAGGCAAGACAGCTCCAGCGAAGAGCAACTCGCTACAACATCCAGCACGACAAGCTCTACCGCCAGGGATTCACCCATCCTAACCTCCGCTGTCTGACCCCAGAGGAAGGAAGGATTGTCTTAGCAGAAATCCATGGCGGGGAATGCGGAAACCACTCGGGCGCCAGATCCCTGGCCAACCGCACAATGCGACAAGGGTACTTCTGGCCCACACTTGGCGATGACGCCCGGCGGATTTCGAGGTCTTGCCACAAGTGCCAACAATTCGCAGATCTCCCACACGCACCAGCGGAACCACTGTCAATCATCGTCGGCCCATGGATTCATTCCACGTGGGGCCTTGACCTGATGGGAAAGTTCCAGACCGCCAAGGGTCAGTTCAAATACATCATTGTTGCCATTGATTACAACAGCAAGTGGATAGAGGCGGAGCCACTGACGGCAATAACTACCGCCAAGGTGATTCGCTTCCTTTGGAAGAATATCTATTGCCGCTACGGTGTCCCACACACAATCATCACAGACAACGGCACACAGTTCAACAATGACGAGCTCATCTCCTTTACCAGCAACTTAGGCACCAAGTTGAGATTTGCATCTGTCGCCCACCCCCAGACCAATGGCCAGGTCGAAGCGGCAAACAAGATAATCAAAAAATTATTAAAAAAGAAGCTCGACGACGCCAAAGGTTTATGGGCGGAAAGGCTCCCAGAGGTCCTGTGGGCCATCCGAACAACTCCAACCTCCGCCACCGGAGAAACTCCTTTTTGTATGATGTTCGGCACAGAGGCTGTCTTACCCATTGAAGTTACTCAACCTACCGCCAGAGTCGAAGGCTACTGCCCAAAGACCAACAGCGCCGGCGTCAACTTAGACAGGGACCTCCTAGAAGAGAAAAGACTCAAGGCCCATTTACACAATCTCCAAAACAAGCAACGAGTATCACGCTTTTACAACGCCAGAGTCAGGGCCCGAAACCTCCAACTGGGGGACTTGGTCATGAAGGAAGTGATCCCGCCACCGACAAAACTCCGCCCAACTTGGGAAGGCCCGTACAAAATTGTGGAAGTCGTTAGCCCAGGCACCTTCTACTTAATGGACAAGGACGGCGTCACGTCACCCCGCCCTTGGAATACTGAACACCTTCGATATTATTACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

1159

Amino Acids

130.66

Weight (kDa)

9.05

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	220 - 380	1.2e-33	Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2	PF17919	445 - 543	3.5e-16	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	474 - 572	1.1e-15	RNase H-like domain found in reverse transcriptase
RVT_3	PF13456	659 - 716	4.8e-07	Reverse transcriptase-like
Integrase_H2C2	PF17921	811 - 861	1.6e-07	Integrase zinc binding domain
rve	PF00665	883 - 976	9.5e-12	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1221
AccB1I	GGYRCC	5 cut(s)	380, 1913, 2477, 2894, 3398
AccB7I	CCANNNNNTGG	1 cut(s)	169
AccI	GTMKAC	5 cut(s)	33, 67, 206, 693, 1215
AccII	CGCG	2 cut(s)	202, 211
AccIII	TCCGGA	1 cut(s)	809
AclI	AACGTT	3 cut(s)	2066, 2241, 2297
AclWI	GGATC	8 cut(s)	263, 276, 647, 1052, 1615, 2098, 2478, 3322
AcoI	YGGCCR	2 cut(s)	2490, 2938
AcsI	RAATTY	3 cut(s)	1121, 1712, 2084
AcuI	CTGAAG	1 cut(s)	929
AcvI	CACGTG	1 cut(s)	2649
AcyI	GRCGYC	9 cut(s)	381, 1218, 1591, 1914, 2478, 2541, 2997, 3180, 3426
AfaI	GTAC	7 cut(s)	50, 1176, 1727, 1843, 2057, 2516, 3371
AfeI	AGCGCT	1 cut(s)	75
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	3 cut(s)	321, 1027, 1879
AgsI	TTSAA	8 cut(s)	189, 700, 1297, 2083, 2239, 2698, 2857, 3122
AhdI	GACNNNNNGTC	1 cut(s)	584
AhlI	ACTAGT	1 cut(s)	1990
AjiI	CACGTC	2 cut(s)	324, 3432
AjuI	GAANNNNNNNTTGG	2 cut(s)	2678, 2710
AleI	CACNNNNGTG	1 cut(s)	2186
Alw21I	GWGCWC	3 cut(s)	15, 1707, 2871
Alw26I	GTCTC	5 cut(s)	1232, 1412, 1447, 1642, 2137
Alw44I	GTGCAC	1 cut(s)	11
AlwI	GGATC	8 cut(s)	263, 276, 647, 1052, 1615, 2098, 2478, 3322
AlwNI	CAGNNNCTG	2 cut(s)	1366, 3107
Ama87I	CYCGRG	3 cut(s)	1675, 1937, 2473
Aor13HI	TCCGGA	1 cut(s)	809
Aor51HI	AGCGCT	1 cut(s)	75
ApaI	GGGCCC	1 cut(s)	3289
ApaLI	GTGCAC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	2042
ApoI	RAATTY	3 cut(s)	1121, 1712, 2084
Asp700I	GAANNNNTTC	1 cut(s)	3459
AsuC2I	CCSGG	7 cut(s)	317, 569, 1499, 1821, 1938, 1939, 2545
AsuHPI	GGTGA	8 cut(s)	484, 670, 853, 1102, 1666, 2380, 2788, 3426
AvaI	CYCGRG	3 cut(s)	1675, 1937, 2473
AvaII	GGWCC	9 cut(s)	453, 1198, 1387, 1873, 1934, 2029, 2314, 3031, 3196
BaeGI	GKGCMC	2 cut(s)	15, 3289
BalI	TGGCCA	2 cut(s)	2492, 2940
BamHI	GGATCC	1 cut(s)	268
BanI	GGYRCC	5 cut(s)	380, 1913, 2477, 2894, 3398
BanII	GRGCYC	3 cut(s)	1707, 2871, 3289
BauI	CACGAG	1 cut(s)	174
BbrPI	CACGTG	1 cut(s)	2649
Bbv12I	GWGCWC	3 cut(s)	15, 1707, 2871
BbvCI	CCTCAGC	1 cut(s)	788
BbvI	GCAGC	1 cut(s)	2054
BccI	CCATC	9 cut(s)	65, 515, 536, 790, 1190, 2257, 2400, 2659, 3050
BceAI	ACGGC	5 cut(s)	154, 1903, 2772, 2860, 3439
BciVI	GTATCC	3 cut(s)	98, 806, 1554
BcnI	CCSGG	7 cut(s)	317, 569, 1499, 1821, 1938, 1939, 2545
BcoDI	GTCTC	5 cut(s)	1232, 1412, 1447, 1642, 2137
BcuI	ACTAGT	1 cut(s)	1990
BfaI	CTAG	6 cut(s)	273, 389, 1001, 1379, 1991, 3203
BfmI	CTRYAG	1 cut(s)	195
BfoI	RGCGCY	6 cut(s)	77, 384, 1568, 1917, 2481, 3177
BfrI	CTTAAG	1 cut(s)	329
BfuI	GTATCC	3 cut(s)	98, 806, 1554
BglII	AGATCT	1 cut(s)	2587
BisI	GCNGC	9 cut(s)	214, 673, 1353, 1383, 1584, 1912, 2043, 2809, 2952
BlpI	GCTNAGC	2 cut(s)	957, 1706
BlsI	GCNGC	9 cut(s)	215, 674, 1354, 1384, 1585, 1913, 2044, 2810, 2953
Bme18I	GGWCC	9 cut(s)	453, 1198, 1387, 1873, 1934, 2029, 2314, 3031, 3196
BmeRI	GACNNNNNGTC	1 cut(s)	584
BmeT110I	CYCGRG	3 cut(s)	1675, 1937, 2473
BmgBI	CACGTC	2 cut(s)	324, 3432
BmrI	ACTGGG	2 cut(s)	36, 3311
BmsI	GCATC	9 cut(s)	102, 351, 364, 483, 754, 790, 970, 1647, 2921
BmuI	ACTGGG	2 cut(s)	36, 3311
BplI	GAGNNNNNCTC	2 cut(s)	2858, 2890
BpmI	CTGGAG	1 cut(s)	2315
Bpu10I	CCTNAGC	2 cut(s)	788, 2124
Bpu1102I	GCTNAGC	2 cut(s)	957, 1706
BpuEI	CTTGAG	3 cut(s)	71, 1794, 3203
BpuMI	CCSGG	7 cut(s)	317, 569, 1499, 1821, 1938, 1939, 2545
Bsa29I	ATCGAT	1 cut(s)	750
BsaAI	YACGTR	2 cut(s)	428, 2649
BsaBI	GATNNNNATC	1 cut(s)	2911
BsaHI	GRCGYC	9 cut(s)	381, 1218, 1591, 1914, 2478, 2541, 2997, 3180, 3426
BsaI	GGTCTC	1 cut(s)	1447
BsaWI	WCCGGW	3 cut(s)	809, 1931, 3068
BsaXI	ACNNNNNCTCC	4 cut(s)	768, 798, 3222, 3252
Bse118I	RCCGGY	4 cut(s)	307, 917, 1511, 3176
Bse1I	ACTGG	8 cut(s)	42, 1020, 1222, 1337, 1839, 2142, 2151, 3306
Bse3DI	GCAATG	1 cut(s)	96
Bse8I	GATNNNNATC	1 cut(s)	2911
BseAI	TCCGGA	1 cut(s)	809
BseCI	ATCGAT	1 cut(s)	750
BseJI	GATNNNNATC	1 cut(s)	2911
BseMI	GCAATG	1 cut(s)	96
BseNI	ACTGG	8 cut(s)	42, 1020, 1222, 1337, 1839, 2142, 2151, 3306
BseRI	GAGGAG	2 cut(s)	776, 1292
BseSI	GKGCMC	2 cut(s)	15, 3289
BseXI	GCAGC	1 cut(s)	2054
BseYI	CCCAGC	4 cut(s)	384, 668, 836, 2255
Bsh1236I	CGCG	2 cut(s)	202, 211
Bsh1285I	CGRYCG	1 cut(s)	206
BshNI	GGYRCC	5 cut(s)	380, 1913, 2477, 2894, 3398
BshVI	ATCGAT	1 cut(s)	750
BsiEI	CGRYCG	1 cut(s)	206
BsiHKAI	GWGCWC	3 cut(s)	15, 1707, 2871
BsiHKCI	CYCGRG	3 cut(s)	1675, 1937, 2473
BslFI	GGGAC	9 cut(s)	24, 614, 1373, 1388, 1886, 1956, 2804, 3209, 3320
BsmAI	GTCTC	5 cut(s)	1232, 1412, 1447, 1642, 2137
BsmBI	CGTCTC	1 cut(s)	1412
BsmFI	GGGAC	9 cut(s)	24, 614, 1373, 1388, 1886, 1956, 2804, 3209, 3320
BsmI	GAATGC	3 cut(s)	185, 854, 2465
Bso31I	GGTCTC	1 cut(s)	1447
BsoBI	CYCGRG	3 cut(s)	1675, 1937, 2473
Bsp120I	GGGCCC	1 cut(s)	3285
Bsp1286I	GDGCHC	4 cut(s)	15, 1707, 2871, 3289
Bsp13I	TCCGGA	1 cut(s)	809
Bsp1720I	GCTNAGC	2 cut(s)	957, 1706
Bsp19I	CCATGG	2 cut(s)	2449, 2633
BspDI	ATCGAT	1 cut(s)	750
BspEI	TCCGGA	1 cut(s)	809
BspFNI	CGCG	2 cut(s)	202, 211
BspHI	TCATGA	2 cut(s)	117, 3315
BspPI	GGATC	8 cut(s)	263, 276, 647, 1052, 1615, 2098, 2478, 3322
BspQI	GCTCTTC	1 cut(s)	2332
BspT107I	GGYRCC	5 cut(s)	380, 1913, 2477, 2894, 3398
BspTI	CTTAAG	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	1447
BsrDI	GCAATG	1 cut(s)	96
BsrFI	RCCGGY	4 cut(s)	307, 917, 1511, 3176
BsrI	ACTGG	8 cut(s)	42, 1020, 1222, 1337, 1839, 2142, 2151, 3306
BssAI	RCCGGY	4 cut(s)	307, 917, 1511, 3176
BssNI	GRCGYC	9 cut(s)	381, 1218, 1591, 1914, 2478, 2541, 2997, 3180, 3426
BssSI	CACGAG	1 cut(s)	174
BssT1I	CCWWGG	8 cut(s)	1231, 1902, 2025, 2449, 2633, 2685, 2772, 3443
Bst2BI	CACGAG	1 cut(s)	174
Bst6I	CTCTTC	3 cut(s)	276, 2332, 3201
BstACI	GRCGYC	9 cut(s)	381, 1218, 1591, 1914, 2478, 2541, 2997, 3180, 3426
BstAFI	CTTAAG	1 cut(s)	329
BstBAI	YACGTR	2 cut(s)	428, 2649
BstDSI	CCRYGG	2 cut(s)	2449, 2633
BstENI	CCTNNNNNAGG	1 cut(s)	1410
BstFNI	CGCG	2 cut(s)	202, 211
BstH2I	RGCGCY	6 cut(s)	77, 384, 1568, 1917, 2481, 3177
BstMAI	GTCTC	5 cut(s)	1232, 1412, 1447, 1642, 2137
BstMCI	CGRYCG	1 cut(s)	206
BstNSI	RCATGY	6 cut(s)	112, 469, 720, 1000, 1031, 1883
BstSFI	CTRYAG	1 cut(s)	195
BstSLI	GKGCMC	2 cut(s)	15, 3289
BstUI	CGCG	2 cut(s)	202, 211
BstV1I	GCAGC	1 cut(s)	2054
BstX2I	RGATCY	5 cut(s)	268, 639, 2103, 2483, 2587
BstXI	CCANNNNNNTGG	3 cut(s)	2263, 2488, 2936
BstYI	RGATCY	5 cut(s)	268, 639, 2103, 2483, 2587
Bsu15I	ATCGAT	1 cut(s)	750
BsuI	GTATCC	3 cut(s)	98, 806, 1554
BsuTUI	ATCGAT	1 cut(s)	750
BtgI	CCRYGG	2 cut(s)	2449, 2633
BtgZI	GCGATG	2 cut(s)	1756, 2550
BtrI	CACGTC	2 cut(s)	324, 3432
BtsIMutI	CAGTG	8 cut(s)	237, 480, 641, 1027, 1229, 2135, 2612, 2750
CaiI	CAGNNNCTG	2 cut(s)	1366, 3107
CciI	TCATGA	2 cut(s)	117, 3315
Cfr10I	RCCGGY	4 cut(s)	307, 917, 1511, 3176
Cfr9I	CCCGGG	1 cut(s)	1937
ClaI	ATCGAT	1 cut(s)	750
CsiI	ACCWGGT	1 cut(s)	2001
Csp6I	GTAC	7 cut(s)	49, 1175, 1726, 1842, 2056, 2515, 3370
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviQI	GTAC	7 cut(s)	49, 1175, 1726, 1842, 2056, 2515, 3370
DinI	GGCGCC	3 cut(s)	382, 1915, 2479
DriI	GACNNNNNGTC	1 cut(s)	584
EaeI	YGGCCR	2 cut(s)	2490, 2938
Eam1104I	CTCTTC	3 cut(s)	276, 2332, 3201
Eam1105I	GACNNNNNGTC	1 cut(s)	584
EarI	CTCTTC	3 cut(s)	276, 2332, 3201
Ecl136II	GAGCTC	2 cut(s)	1705, 2869
Eco130I	CCWWGG	8 cut(s)	1231, 1902, 2025, 2449, 2633, 2685, 2772, 3443
Eco147I	AGGCCT	1 cut(s)	876
Eco24I	GRGCYC	3 cut(s)	1707, 2871, 3289
Eco31I	GGTCTC	1 cut(s)	1447
Eco47I	GGWCC	9 cut(s)	453, 1198, 1387, 1873, 1934, 2029, 2314, 3031, 3196
Eco47III	AGCGCT	1 cut(s)	75
Eco53kI	GAGCTC	2 cut(s)	1705, 2869
Eco57I	CTGAAG	1 cut(s)	929
Eco72I	CACGTG	1 cut(s)	2649
Eco88I	CYCGRG	3 cut(s)	1675, 1937, 2473
EcoICRI	GAGCTC	2 cut(s)	1705, 2869
EcoNI	CCTNNNNNAGG	1 cut(s)	1410
EcoO109I	RGGNCCY	6 cut(s)	546, 1873, 2653, 3031, 3196, 3285
EcoT14I	CCWWGG	8 cut(s)	1231, 1902, 2025, 2449, 2633, 2685, 2772, 3443
EcoT38I	GRGCYC	3 cut(s)	1707, 2871, 3289
EgeI	GGCGCC	3 cut(s)	382, 1915, 2479
EheI	GGCGCC	3 cut(s)	382, 1915, 2479
ErhI	CCWWGG	8 cut(s)	1231, 1902, 2025, 2449, 2633, 2685, 2772, 3443
Esp3I	CGTCTC	1 cut(s)	1412
FaqI	GGGAC	9 cut(s)	24, 614, 1373, 1388, 1886, 1956, 2804, 3209, 3320
FauI	CCCGC	6 cut(s)	252, 744, 1470, 2447, 3339, 3446
FblI	GTMKAC	5 cut(s)	33, 67, 206, 693, 1215
Fnu4HI	GCNGC	9 cut(s)	214, 673, 1353, 1383, 1584, 1912, 2043, 2809, 2952
FriOI	GRGCYC	3 cut(s)	1707, 2871, 3289
Fsp4HI	GCNGC	9 cut(s)	214, 673, 1353, 1383, 1584, 1912, 2043, 2809, 2952
FspBI	CTAG	6 cut(s)	273, 389, 1001, 1379, 1991, 3203
GluI	GCNGC	9 cut(s)	214, 673, 1353, 1383, 1584, 1912, 2043, 2809, 2952
GsaI	CCCAGC	4 cut(s)	388, 672, 840, 2259
GsuI	CTGGAG	1 cut(s)	2315
HaeII	RGCGCY	6 cut(s)	77, 384, 1568, 1917, 2481, 3177
Hin1I	GRCGYC	9 cut(s)	381, 1218, 1591, 1914, 2478, 2541, 2997, 3180, 3426
HpaI	GTTAAC	2 cut(s)	1242, 2251
HphI	GGTGA	8 cut(s)	484, 670, 853, 1102, 1666, 2380, 2788, 3426
Hpy188I	TCNGA	9 cut(s)	349, 578, 822, 909, 1198, 1867, 2169, 2412, 3047
Hpy99I	CGWCG	7 cut(s)	35, 211, 328, 695, 2630, 2996, 2999
HpyCH4IV	ACGT	9 cut(s)	323, 427, 1218, 2058, 2066, 2241, 2297, 2648, 3431
HpySE526I	ACGT	9 cut(s)	323, 427, 1218, 2058, 2066, 2241, 2297, 2648, 3431
Hsp92I	GRCGYC	9 cut(s)	381, 1218, 1591, 1914, 2478, 2541, 2997, 3180, 3426
KasI	GGCGCC	3 cut(s)	380, 1913, 2477
Kpn2I	TCCGGA	1 cut(s)	809
KroI	GCCGGC	2 cut(s)	1511, 3176
KroNI	GCCGGC	2 cut(s)	1513, 3178
KspAI	GTTAAC	2 cut(s)	1242, 2251
LguI	GCTCTTC	1 cut(s)	2332
LmnI	GCTCC	6 cut(s)	304, 1529, 1895, 2334, 2746, 3027
Lsp1109I	GCAGC	1 cut(s)	2054
LweI	GCATC	9 cut(s)	102, 351, 364, 483, 754, 790, 970, 1647, 2921
MabI	ACCWGGT	1 cut(s)	2001
MaeI	CTAG	6 cut(s)	273, 389, 1001, 1379, 1991, 3203
MaeII	ACGT	9 cut(s)	323, 427, 1218, 2058, 2066, 2241, 2297, 2648, 3431
MaeIII	GTNAC	9 cut(s)	428, 1051, 1108, 1130, 1834, 1849, 3124, 3427, 3432
MboII	GAAGA	9 cut(s)	293, 298, 922, 1285, 2227, 2318, 2349, 2806, 3218
MflI	RGATCY	5 cut(s)	268, 639, 2103, 2483, 2587
MhlI	GDGCHC	4 cut(s)	15, 1707, 2871, 3289
MlsI	TGGCCA	2 cut(s)	2492, 2940
MluCI	AATT	7 cut(s)	972, 1121, 1712, 2084, 2579, 2972, 3375
MluNI	TGGCCA	2 cut(s)	2492, 2940
Mly113I	GGCGCC	3 cut(s)	381, 1914, 2478
MlyI	GAGTC	7 cut(s)	1677, 1929, 1976, 2179, 3153, 3210, 3288
MmeI	TCCRAC	4 cut(s)	1176, 1533, 3080, 3322
Mox20I	TGGCCA	2 cut(s)	2492, 2940
MreI	CGCCGGCG	1 cut(s)	3176
MroI	TCCGGA	1 cut(s)	809
MroNI	GCCGGC	2 cut(s)	1511, 3176
MroXI	GAANNNNTTC	1 cut(s)	3459
MscI	TGGCCA	2 cut(s)	2492, 2940
MseI	TTAA	9 cut(s)	78, 330, 1005, 1188, 1241, 1928, 2250, 2978, 3410
MslI	CAYNNNNRTG	2 cut(s)	178, 2186
Msp20I	TGGCCA	2 cut(s)	2492, 2940
MspCI	CTTAAG	1 cut(s)	329
Mva1269I	GAATGC	3 cut(s)	185, 854, 2465
MvnI	CGCG	2 cut(s)	202, 211
NaeI	GCCGGC	2 cut(s)	1513, 3178
NarI	GGCGCC	3 cut(s)	381, 1914, 2478
NciI	CCSGG	7 cut(s)	317, 569, 1499, 1821, 1938, 1939, 2545
NcoI	CCATGG	2 cut(s)	2449, 2633
NgoMIV	GCCGGC	2 cut(s)	1511, 3176
NmeAIII	GCCGAG	1 cut(s)	1424
NmuCI	GTSAC	4 cut(s)	428, 1108, 3427, 3432
NspI	RCATGY	6 cut(s)	112, 469, 720, 1000, 1031, 1883
OliI	CACNNNNGTG	1 cut(s)	2186
PaeI	GCATGC	1 cut(s)	720
PagI	TCATGA	2 cut(s)	117, 3315
PasI	CCCWGGG	1 cut(s)	2109
PceI	AGGCCT	1 cut(s)	876
PciI	ACATGT	2 cut(s)	1027, 1879
PciSI	GCTCTTC	1 cut(s)	2332
PctI	GAATGC	3 cut(s)	185, 854, 2465
PdiI	GCCGGC	2 cut(s)	1513, 3178
PdmI	GAANNNNTTC	1 cut(s)	3459
PfeI	GAWTC	7 cut(s)	609, 1152, 1257, 2132, 2385, 2638, 2779
PflFI	GACNNNGTC	3 cut(s)	1965, 3311, 3425
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	9 cut(s)	215, 674, 1354, 1384, 1585, 1913, 2044, 2810, 2953
PleI	GAGTC	7 cut(s)	1677, 1928, 1976, 2178, 3152, 3210, 3287
PluTI	GGCGCC	3 cut(s)	384, 1917, 2481
PmaCI	CACGTG	1 cut(s)	2649
PmlI	CACGTG	1 cut(s)	2649
PpsI	GAGTC	7 cut(s)	1677, 1928, 1976, 2178, 3152, 3210, 3287
Ppu21I	YACGTR	2 cut(s)	428, 2649
PpuMI	RGGWCCY	3 cut(s)	1873, 3031, 3196
PscI	ACATGT	2 cut(s)	1027, 1879
Psp124BI	GAGCTC	2 cut(s)	1707, 2871
Psp1406I	AACGTT	3 cut(s)	2066, 2241, 2297
Psp5II	RGGWCCY	3 cut(s)	1873, 3031, 3196
PspCI	CACGTG	1 cut(s)	2649
PspFI	CCCAGC	4 cut(s)	384, 668, 836, 2255
PspOMI	GGGCCC	1 cut(s)	3285
PspPPI	RGGWCCY	3 cut(s)	1873, 3031, 3196
PstNI	CAGNNNCTG	2 cut(s)	1366, 3107
PsuI	RGATCY	5 cut(s)	268, 639, 2103, 2483, 2587
PsyI	GACNNNGTC	3 cut(s)	1965, 3311, 3425
PvuII	CAGCTG	4 cut(s)	169, 757, 1561, 2259
RsaI	GTAC	7 cut(s)	50, 1176, 1727, 1843, 2057, 2516, 3371
RsaNI	GTAC	7 cut(s)	49, 1175, 1726, 1842, 2056, 2515, 3370
RseI	CAYNNNNRTG	2 cut(s)	178, 2186
SacI	GAGCTC	2 cut(s)	1707, 2871
SalI	GTCGAC	4 cut(s)	32, 66, 205, 692
SapI	GCTCTTC	1 cut(s)	2332
SaqAI	TTAA	9 cut(s)	78, 330, 1005, 1188, 1241, 1928, 2250, 2978, 3410
SatI	GCNGC	9 cut(s)	214, 673, 1353, 1383, 1584, 1912, 2043, 2809, 2952
SchI	GAGTC	7 cut(s)	1677, 1929, 1976, 2179, 3153, 3210, 3288
SduI	GDGCHC	4 cut(s)	15, 1707, 2871, 3289
SexAI	ACCWGGT	1 cut(s)	2001
SfaNI	GCATC	9 cut(s)	102, 351, 364, 483, 754, 790, 970, 1647, 2921
SfcI	CTRYAG	1 cut(s)	195
SfoI	GGCGCC	3 cut(s)	382, 1915, 2479
SgrAI	CRCCGGYG	2 cut(s)	917, 3176
SinI	GGWCC	9 cut(s)	453, 1198, 1387, 1873, 1934, 2029, 2314, 3031, 3196
SmaI	CCCGGG	1 cut(s)	1939
SmiMI	CAYNNNNRTG	2 cut(s)	178, 2186
SmlI	CTYRAG	4 cut(s)	86, 329, 1809, 3218
SmoI	CTYRAG	4 cut(s)	86, 329, 1809, 3218
SpeI	ACTAGT	1 cut(s)	1990
SphI	GCATGC	1 cut(s)	720
Sse9I	AATT	7 cut(s)	972, 1121, 1712, 2084, 2579, 2972, 3375
SseBI	AGGCCT	1 cut(s)	876
SspDI	GGCGCC	3 cut(s)	380, 1913, 2477
SspI	AATATT	1 cut(s)	1604
SspMI	CTAG	6 cut(s)	273, 389, 1001, 1379, 1991, 3203
SstI	GAGCTC	2 cut(s)	1707, 2871
StuI	AGGCCT	1 cut(s)	876
StyI	CCWWGG	8 cut(s)	1231, 1902, 2025, 2449, 2633, 2685, 2772, 3443
TaiI	ACGT	9 cut(s)	326, 430, 1221, 2061, 2069, 2244, 2300, 2651, 3434
TasI	AATT	7 cut(s)	972, 1121, 1712, 2084, 2579, 2972, 3375
TatI	WGTACW	2 cut(s)	1725, 1841
TauI	GCSGC	8 cut(s)	216, 675, 1355, 1385, 1586, 1914, 2811, 2954
TfiI	GAWTC	7 cut(s)	609, 1152, 1257, 2132, 2385, 2638, 2779
Tru1I	TTAA	9 cut(s)	78, 330, 1005, 1188, 1241, 1928, 2250, 2978, 3410
Tru9I	TTAA	9 cut(s)	78, 330, 1005, 1188, 1241, 1928, 2250, 2978, 3410
TscAI	CASTG	8 cut(s)	237, 487, 641, 1027, 1229, 2142, 2619, 2757
TseFI	GTSAC	4 cut(s)	428, 1108, 3427, 3432
TseI	GCWGC	1 cut(s)	2042
Tsp45I	GTSAC	4 cut(s)	428, 1108, 3427, 3432
TspGWI	ACGGA	4 cut(s)	32, 1289, 1542, 2307
TspMI	CCCGGG	1 cut(s)	1937
TspRI	CASTG	8 cut(s)	237, 487, 641, 1027, 1229, 2142, 2619, 2757
Tth111I	GACNNNGTC	3 cut(s)	1965, 3311, 3425
Van91I	CCANNNNNTGG	1 cut(s)	169
Vha464I	CTTAAG	1 cut(s)	329
VneI	GTGCAC	1 cut(s)	11
VpaK11BI	GGWCC	9 cut(s)	453, 1198, 1387, 1873, 1934, 2029, 2314, 3031, 3196
XagI	CCTNNNNNAGG	1 cut(s)	1410
XapI	RAATTY	3 cut(s)	1121, 1712, 2084
XceI	RCATGY	6 cut(s)	112, 469, 720, 1000, 1031, 1883
XcmI	CCANNNNNNNNNTGG	4 cut(s)	1027, 1123, 1866, 3033
XmaI	CCCGGG	1 cut(s)	1937
XmiI	GTMKAC	5 cut(s)	33, 67, 206, 693, 1215
XmnI	GAANNNNTTC	1 cut(s)	3459
XspI	CTAG	6 cut(s)	273, 389, 1001, 1379, 1991, 3203
ZraI	GACGTC	1 cut(s)	1219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.