Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004654.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

16941 .. 17465

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004654.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atggcggagtatgaagcgctcattgcaagattactcctctccatcgactcaggggctgacattgttaacatattcagcgactcccagctagtcgtcaaccaaatccccatagagaagaacgccaaggctgattccctggcaaggttggcaaccactcaaccgcaccagagtccagcggacacaagggtagaggtcctcgataagccaagcatcaccaggactctggtggaaatcttcaacattgagatcaatcccagctggatggacgagataattgagtacaaagtcaatggaacgctgccaaccgacaaggtcaaagtgcggcaacttaagcggagggcaacccactacaacatccagaatggaaaactttatcgccaagggttcacccatcccaaccttcggtgtctgacccctgaggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

141

Amino Acids

16.01

Weight (kDa)

6.31

Isoelectric Point (pI)

56.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	5, 161, 176, 322, 334
AfaI	GTAC	1 cut(s)	281
AfeI	AGCGCT	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	141, 402
AflII	CTTAAG	1 cut(s)	329
AgsI	TTSAA	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	135, 215
AluBI	AGCT	2 cut(s)	88, 258
AluI	AGCT	2 cut(s)	88, 258
AlwNI	CAGNNNCTG	1 cut(s)	56
Aor51HI	AGCGCT	1 cut(s)	18
ApeKI	GCWGC	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	2 cut(s)	205, 379
AvaII	GGWCC	1 cut(s)	193
AxyI	CCTNAGG	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	285
BccI	CCATC	3 cut(s)	50, 256, 399
BciT130I	CCWGG	2 cut(s)	137, 217
BfaI	CTAG	1 cut(s)	89
BfoI	RGCGCY	1 cut(s)	20
BfrI	CTTAAG	1 cut(s)	329
BisI	GCNGC	2 cut(s)	299, 323
BlsI	GCNGC	2 cut(s)	300, 324
Bme1390I	CCNGG	2 cut(s)	137, 217
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
BmrFI	CCNGG	2 cut(s)	137, 217
BmsI	GCATC	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	123, 135, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 402
Bse21I	CCTNAGG	1 cut(s)	417
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	137, 217
BseDI	CCNNGG	3 cut(s)	123, 135, 379
BseGI	GGATG	3 cut(s)	267, 354, 391
BseLI	CCNNNNNNNGG	2 cut(s)	141, 402
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	2 cut(s)	63, 408
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	285
BseYI	CCCAGC	2 cut(s)	84, 254
BslI	CCNNNNNNNGG	2 cut(s)	141, 402
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	5 cut(s)	5, 161, 176, 322, 334
BspCNI	CTCAG	2 cut(s)	62, 409
BspTI	CTTAAG	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	21
BssECI	CCNNGG	3 cut(s)	123, 135, 379
BssMI	GATC	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	123, 379
Bst2UI	CCWGG	2 cut(s)	137, 217
BstAFI	CTTAAG	1 cut(s)	329
BstDEI	CTNAG	2 cut(s)	49, 417
BstF5I	GGATG	3 cut(s)	267, 354, 391
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 146, 331
BstNI	CCWGG	2 cut(s)	137, 217
BstSCI	CCNGG	2 cut(s)	135, 215
BstV1I	GCAGC	1 cut(s)	285
BstXI	CCANNNNNNTGG	2 cut(s)	223, 262
Bsu36I	CCTNAGG	1 cut(s)	417
BtsCI	GGATG	3 cut(s)	267, 354, 391
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	280
CviJI	RGCY	5 cut(s)	56, 88, 128, 205, 258
CviKI_1	RGCY	5 cut(s)	56, 88, 128, 205, 258
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	2 cut(s)	49, 417
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	123, 379
Eco47I	GGWCC	1 cut(s)	193
Eco47III	AGCGCT	1 cut(s)	18
Eco81I	CCTNAGG	1 cut(s)	417
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRII	CCWGG	2 cut(s)	135, 215
EcoT14I	CCWWGG	2 cut(s)	123, 379
ErhI	CCWWGG	2 cut(s)	123, 379
FaiI	YATR	3 cut(s)	12, 71, 110
Fnu4HI	GCNGC	2 cut(s)	299, 323
FokI	GGATG	3 cut(s)	274, 341, 378
Fsp4HI	GCNGC	2 cut(s)	299, 323
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	2 cut(s)	299, 323
GsaI	CCCAGC	2 cut(s)	88, 258
HaeII	RGCGCY	1 cut(s)	20
HhaI	GCGC	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HincII	GTYRAC	2 cut(s)	67, 97
HindII	GTYRAC	2 cut(s)	67, 97
HinfI	GANTC	5 cut(s)	47, 80, 131, 169, 220
HpaI	GTTAAC	1 cut(s)	67
HphI	GGTGA	2 cut(s)	205, 379
Hpy166II	GTNNAC	3 cut(s)	67, 97, 387
Hpy188I	TCNGA	1 cut(s)	411
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	3 cut(s)	67, 97, 387
HpyAV	CCTTC	1 cut(s)	410
HpyCH4V	TGCA	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 146, 331
HpyF3I	CTNAG	2 cut(s)	49, 417
HspAI	GCGC	1 cut(s)	17
KspAI	GTTAAC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	246
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	1 cut(s)	89
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	2 cut(s)	127, 226
MluCI	AATT	1 cut(s)	273
MlyI	GAGTC	4 cut(s)	41, 74, 178, 214
MnlI	CCTC	5 cut(s)	47, 184, 206, 330, 412
MseI	TTAA	2 cut(s)	66, 330
MspA1I	CMGCKG	2 cut(s)	176, 258
MspCI	CTTAAG	1 cut(s)	329
MspR9I	CCNGG	2 cut(s)	137, 217
MvaI	CCWGG	2 cut(s)	137, 217
MwoI	GCNNNNNNNGC	3 cut(s)	23, 146, 331
NdeII	GATC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	131
PflFI	GACNNNGTC	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	300, 324
PleI	GAGTC	4 cut(s)	41, 74, 177, 214
PpsI	GAGTC	4 cut(s)	41, 74, 177, 214
PpuMI	RGGWCCY	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	193
Psp6I	CCWGG	2 cut(s)	135, 215
PspFI	CCCAGC	2 cut(s)	84, 254
PspGI	CCWGG	2 cut(s)	135, 215
PspPI	GGNCC	1 cut(s)	193
PspPPI	RGGWCCY	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	56
PsyI	GACNNNGTC	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	258
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	2 cut(s)	66, 330
SatI	GCNGC	2 cut(s)	299, 323
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	4 cut(s)	41, 74, 178, 214
ScrFI	CCNGG	2 cut(s)	137, 217
SetI	ASST	6 cut(s)	90, 146, 195, 260, 315, 402
SfaNI	GCATC	1 cut(s)	219
SinI	GGWCC	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	1 cut(s)	273
SsiI	CCGC	5 cut(s)	5, 161, 176, 322, 334
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	2 cut(s)	135, 215
StyI	CCWWGG	2 cut(s)	123, 379
TaqI	TCGA	2 cut(s)	45, 198
TasI	AATT	1 cut(s)	273
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	1 cut(s)	325
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	2 cut(s)	66, 330
Tru9I	TTAA	2 cut(s)	66, 330
TseI	GCWGC	1 cut(s)	298
TspDTI	ATGAA	1 cut(s)	27
Tth111I	GACNNNGTC	1 cut(s)	311
Vha464I	CTTAAG	1 cut(s)	329
VpaK11BI	GGWCC	1 cut(s)	193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.