Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000215.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

153926 .. 154431

Gene Structure 506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000215.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atggtggagtacgaagcgctcatcgtaggcctactcatcaccatcgacttaggggctgatagtgtcaacacatattcagcgactcctaccttgttgttaaccagagaaaagaacgccaaggctgattcactagcaagactagcaaccgctaagccacaccaaagtccagcggacacgagggtggagtgtcttaacaggcctagcatcacaaaaaccctagcggagatcttcaacattgaggtcaatcccagttggatgaacgagatcatcgaatacaagcacaatggaacattgccagaggacaaggtcgaagcacgaaagctcaagcggagagcaacccgctacaacatccagaatggcaagctttaccgccaggggttcacccaccccaacctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

132

Amino Acids

14.91

Weight (kDa)

9.07

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	147, 170, 221, 328, 340, 370
AfaI	GTAC	1 cut(s)	11
AfeI	AGCGCT	1 cut(s)	18
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	372
AleI	CACNNNNGTG	1 cut(s)	179
AluBI	AGCT	2 cut(s)	322, 364
AluI	AGCT	2 cut(s)	322, 364
Aor51HI	AGCGCT	1 cut(s)	18
AoxI	GGCC	2 cut(s)	28, 197
AspLEI	GCGC	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	31, 373
BauI	CACGAG	1 cut(s)	175
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	374
BfaI	CTAG	4 cut(s)	131, 140, 201, 218
BfoI	RGCGCY	1 cut(s)	20
BglII	AGATCT	1 cut(s)	225
BlpI	GCTNAGC	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	374
BmrFI	CCNGG	1 cut(s)	374
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	213
BmuI	ACTGGG	1 cut(s)	243
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	308
BsaJI	CCNNGG	2 cut(s)	117, 373
Bse1I	ACTGG	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	2 cut(s)	117, 373
BseGI	GGATG	2 cut(s)	261, 348
BseMI	GCAATG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	249
BshFI	GGCC	2 cut(s)	30, 199
BsnI	GGCC	2 cut(s)	30, 199
Bsp143I	GATC	2 cut(s)	225, 264
Bsp1720I	GCTNAGC	1 cut(s)	150
BspACI	CCGC	6 cut(s)	147, 170, 221, 328, 340, 370
BspANI	GGCC	2 cut(s)	30, 199
BsrDI	GCAATG	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	249
BssECI	CCNNGG	2 cut(s)	117, 373
BssMI	GATC	2 cut(s)	225, 264
BssSI	CACGAG	1 cut(s)	175
BssT1I	CCWWGG	1 cut(s)	117
Bst2BI	CACGAG	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	2 cut(s)	49, 150
BstF5I	GGATG	2 cut(s)	261, 348
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	2 cut(s)	228, 267
BstMBI	GATC	2 cut(s)	225, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNI	CCWGG	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	372
BstX2I	RGATCY	1 cut(s)	225
BstYI	RGATCY	1 cut(s)	225
BsuRI	GGCC	2 cut(s)	30, 199
BtsCI	GGATG	2 cut(s)	261, 348
Cac8I	GCNNGC	1 cut(s)	362
CfoI	GCGC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	10
CviJI	RGCY	7 cut(s)	30, 56, 122, 154, 199, 322, 364
CviKI_1	RGCY	7 cut(s)	30, 56, 122, 154, 199, 322, 364
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	2 cut(s)	49, 150
DpnI	GATC	2 cut(s)	227, 266
DpnII	GATC	2 cut(s)	225, 264
Eco130I	CCWWGG	1 cut(s)	117
Eco147I	AGGCCT	2 cut(s)	30, 199
Eco47III	AGCGCT	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaiI	YATR	1 cut(s)	73
FauI	CCCGC	1 cut(s)	347
FokI	GGATG	2 cut(s)	268, 335
FspBI	CTAG	4 cut(s)	131, 140, 201, 218
GlaI	GCGC	1 cut(s)	18
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	2 cut(s)	30, 199
HhaI	GCGC	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HincII	GTYRAC	2 cut(s)	67, 99
HindII	GTYRAC	2 cut(s)	67, 99
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	2 cut(s)	82, 125
HpaI	GTTAAC	1 cut(s)	99
HphI	GGTGA	2 cut(s)	31, 373
Hpy166II	GTNNAC	3 cut(s)	67, 99, 381
Hpy188I	TCNGA	1 cut(s)	398
Hpy188III	TCNNGA	1 cut(s)	352
Hpy8I	GTNNAC	3 cut(s)	67, 99, 381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	49, 150
HspAI	GCGC	1 cut(s)	17
KspAI	GTTAAC	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	225, 264
LpnPI	CCDG	8 cut(s)	115, 180, 181, 262, 309, 359, 365, 386
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	4 cut(s)	131, 140, 201, 218
MalI	GATC	2 cut(s)	227, 266
MboI	GATC	2 cut(s)	225, 264
MboII	GAAGA	1 cut(s)	220
MflI	RGATCY	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	3 cut(s)	171, 232, 292
MseI	TTAA	2 cut(s)	98, 192
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	2 cut(s)	225, 264
OliI	CACNNNNGTG	1 cut(s)	179
PceI	AGGCCT	2 cut(s)	30, 199
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	125
PflFI	GACNNNGTC	1 cut(s)	305
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	372
PsuI	RGATCY	1 cut(s)	225
PsyI	GACNNNGTC	1 cut(s)	305
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	98, 192
Sau3AI	GATC	2 cut(s)	225, 264
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	374
SetI	ASST	6 cut(s)	92, 243, 309, 324, 366, 396
SfaNI	GCATC	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SseBI	AGGCCT	2 cut(s)	30, 199
SsiI	CCGC	6 cut(s)	147, 170, 221, 328, 340, 370
SspMI	CTAG	4 cut(s)	131, 140, 201, 218
StuI	AGGCCT	2 cut(s)	30, 199
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	1 cut(s)	117
TaqI	TCGA	3 cut(s)	45, 270, 309
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	2 cut(s)	98, 192
Tru9I	TTAA	2 cut(s)	98, 192
TspDTI	ATGAA	1 cut(s)	272
Tth111I	GACNNNGTC	1 cut(s)	305
XspI	CTAG	4 cut(s)	131, 140, 201, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.