Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

36337563 .. 36338744

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G018280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGCGCTTGCTAAAAGCGGCATCATCAATCACCATTTTCACTAATCACCCATTGAGGCAGGTTTTGCAGAAACCAGAGACATCGGGCAGGTTAATTAAATGGGCCATCGAGCTGGGGGAGTTCGATATCAAGTACCAGTCCCGGACAGCTATTAAGGGCCAGGCAGCAGCAGATTTTATTTCCGAGTCAATTCCCTCCCATAACCCACCCCTGGAATCACCTGAACCACTAGCCCCAGATCCACCTCCGCCAAGCACTTGGCGATTATACGTTGATGGCGTGTCCAACAAGAAAACCAGTGGAGCTGGTATCCTGGTAATTAGCCCGGACGATCAAGTCTACGAGTACGCCCTCAAATTTGCCTTCAAGGCATCCAACAATGTCGCAGAGTACAAGGCACTCATAGCAGGTCTACAGATCACCCTGGAACTAGGCGTGCAGCACCTTAGTATCTTCAGTGATTCTCAGTTAGTCGTAAACCAGGTCAGCGGTAACTTTGAGGCAAAGGAGCCCCACATGTTCTCTTACCAGGCCTTAGCCTGGGCATTAGATCAGAGATTTACCTCCTACATTTTTACCCAAATACCGAGGGCAGAAAACGACAAGGCAGACGCCCTTGCTAAGCTTGCATCAACTTCTCCAAGTCCTACCTATGGGGCCACTAAGGTCGAAATACTCGAAAGACCTAGCACTTCTAAAACGGTGTTAGAAATATTTACGGTGGATCACACAGCTTCATGGATGGACCCAATTTTGAAATACATGATCGACGGCCTAACACCGGACGATAAGGTCGAGGCCAGAAGACTACAGTTAAGGTCAGCTCGATACACGATCATGAATGGCAAATTGTACAGAAGAGGCCACTGCTTTCCCAATCTGAAGTGTGTAACACCGGAGGAAGGTCACAAAATAATGAAGGACATACACGCTGGTGTATGCGGTAACCATGCCGGAGCCCGATCTCTTGCACATAAGACCCTAAGGGCAGGATATTTCTGGCCAACCATGTCGGCCCTAGCCCAAACAATATCCAGTTCTTGCCATAAGTGCCAAATGTATGCAAATATCCCAAGGGCACCGCCCATTGCTCTCTCCATCCTCCTTGCACCATGGCCGTTCTGTCAGTGGGGTTTGGACTTGATTGGTAAACTTTCCACAGCAGTGGGACAGTTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

393

Amino Acids

43.51

Weight (kDa)

8.96

Isoelectric Point (pI)

38.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_H	PF00075	88 - 164	1.2e-07	RNase H
RVT_3	PF13456	91 - 210	8.4e-22	Reverse transcriptase-like
Integrase_H2C2	PF17921	299 - 354	7e-08	Integrase zinc binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	335, 791
Acc36I	ACCTGC	3 cut(s)	49, 78, 398
AccB1I	GGYRCC	1 cut(s)	1078
AccI	GTMKAC	2 cut(s)	339, 412
AciI	CCGC	5 cut(s)	17, 248, 489, 942, 1082
AclWI	GGATC	2 cut(s)	233, 732
AcoI	YGGCCR	2 cut(s)	1001, 1115
AcsI	RAATTY	1 cut(s)	356
AcuI	CTGAAG	2 cut(s)	439, 902
AcyI	GRCGYC	1 cut(s)	612
AfaI	GTAC	4 cut(s)	134, 347, 392, 854
AfiI	CCNNNNNNNGG	5 cut(s)	211, 540, 653, 781, 902
AflIII	ACRYGT	1 cut(s)	516
AgsI	TTSAA	3 cut(s)	367, 757, 1177
AjnI	CCWGG	7 cut(s)	159, 210, 312, 423, 480, 528, 539
AleI	CACNNNNGTG	2 cut(s)	933, 1163
AluBI	AGCT	6 cut(s)	112, 149, 305, 625, 734, 824
AluI	AGCT	6 cut(s)	112, 149, 305, 625, 734, 824
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	2 cut(s)	233, 732
ApeKI	GCWGC	3 cut(s)	164, 167, 439
ApoI	RAATTY	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	5 cut(s)	102, 157, 657, 745, 1015
AsuC2I	CCSGG	2 cut(s)	142, 326
AsuHPI	GGTGA	4 cut(s)	22, 38, 210, 412
AvaII	GGWCC	1 cut(s)	745
AxyI	CCTNAGG	1 cut(s)	983
BaeGI	GKGCMC	1 cut(s)	1081
BaeI	ACNNNNGTAYC	2 cut(s)	433, 466
BalI	TGGCCA	1 cut(s)	1003
BanI	GGYRCC	1 cut(s)	1078
BanII	GRGCYC	2 cut(s)	513, 961
BbsI	GAAGAC	1 cut(s)	811
BbvI	GCAGC	3 cut(s)	176, 179, 451
BccI	CCATC	4 cut(s)	113, 269, 736, 1106
BceAI	ACGGC	2 cut(s)	787, 1102
BciT130I	CCWGG	7 cut(s)	161, 212, 314, 425, 482, 530, 541
BciVI	GTATCC	1 cut(s)	320
BcnI	CCSGG	2 cut(s)	142, 326
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	4 cut(s)	230, 431, 687, 1019
BfmI	CTRYAG	2 cut(s)	413, 809
BfuAI	ACCTGC	3 cut(s)	49, 78, 398
BfuI	GTATCC	1 cut(s)	320
BglI	GCCNNNNNGGC	1 cut(s)	368
BisI	GCNGC	4 cut(s)	18, 165, 168, 440
BlpI	GCTNAGC	1 cut(s)	621
BlsI	GCNGC	4 cut(s)	19, 166, 169, 441
Bme1390I	CCNGG	9 cut(s)	142, 161, 212, 314, 326, 425, 482, 530, 541
Bme18I	GGWCC	1 cut(s)	745
BmgT120I	GGNCC	5 cut(s)	102, 157, 657, 745, 1015
BmiI	GGNNCC	5 cut(s)	510, 658, 747, 958, 1080
BmrFI	CCNGG	9 cut(s)	142, 161, 212, 314, 326, 425, 482, 530, 541
BmsI	GCATC	3 cut(s)	29, 380, 638
BpiI	GAAGAC	1 cut(s)	811
Bpu10I	CCTNAGC	1 cut(s)	535
Bpu1102I	GCTNAGC	1 cut(s)	621
BpuMI	CCSGG	2 cut(s)	142, 326
BsaHI	GRCGYC	1 cut(s)	612
BsaJI	CCNNGG	6 cut(s)	210, 423, 540, 587, 1073, 1112
BsaWI	WCCGGW	2 cut(s)	781, 895
Bsc4I	CCNNNNNNNGG	5 cut(s)	211, 540, 653, 781, 902
Bse1I	ACTGG	3 cut(s)	136, 297, 1035
Bse21I	CCTNAGG	1 cut(s)	983
Bse3DI	GCAATG	1 cut(s)	1086
BseBI	CCWGG	7 cut(s)	161, 212, 314, 425, 482, 530, 541
BseDI	CCNNGG	6 cut(s)	210, 423, 540, 587, 1073, 1112
BseGI	GGATG	3 cut(s)	371, 747, 1098
BseLI	CCNNNNNNNGG	5 cut(s)	211, 540, 653, 781, 902
BseMI	GCAATG	1 cut(s)	1086
BseMII	CTCAG	1 cut(s)	479
BseNI	ACTGG	3 cut(s)	136, 297, 1035
BseSI	GKGCMC	1 cut(s)	1081
BseXI	GCAGC	3 cut(s)	176, 179, 451
BseYI	CCCAGC	1 cut(s)	112
BsgI	GTGCAG	1 cut(s)	458
BshNI	GGYRCC	1 cut(s)	1078
BsiSI	CCGG	5 cut(s)	142, 326, 782, 896, 954
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	5 cut(s)	211, 540, 653, 781, 902
BsmAI	GTCTC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	124
Bsp1286I	GDGCHC	3 cut(s)	513, 961, 1081
Bsp1407I	TGTACA	1 cut(s)	852
Bsp143I	GATC	8 cut(s)	238, 331, 417, 550, 724, 765, 834, 962
Bsp1720I	GCTNAGC	1 cut(s)	621
Bsp19I	CCATGG	1 cut(s)	1112
BspACI	CCGC	5 cut(s)	17, 248, 489, 942, 1082
BspCNI	CTCAG	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	837
BspLI	GGNNCC	5 cut(s)	510, 658, 747, 958, 1080
BspMI	ACCTGC	3 cut(s)	49, 78, 398
BspPI	GGATC	2 cut(s)	233, 732
BspT107I	GGYRCC	1 cut(s)	1078
BsrDI	GCAATG	1 cut(s)	1086
BsrGI	TGTACA	1 cut(s)	852
BsrI	ACTGG	3 cut(s)	136, 297, 1035
BssECI	CCNNGG	6 cut(s)	210, 423, 540, 587, 1073, 1112
BssMI	GATC	8 cut(s)	238, 331, 417, 550, 724, 765, 834, 962
BssNI	GRCGYC	1 cut(s)	612
BssT1I	CCWWGG	2 cut(s)	1073, 1112
Bst2UI	CCWGG	7 cut(s)	161, 212, 314, 425, 482, 530, 541
Bst4CI	ACNGT	4 cut(s)	703, 721, 813, 1173
Bst6I	CTCTTC	1 cut(s)	853
BstACI	GRCGYC	1 cut(s)	612
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstAUI	TGTACA	1 cut(s)	852
BstC8I	GCNNGC	3 cut(s)	8, 437, 627
BstDEI	CTNAG	6 cut(s)	446, 465, 535, 621, 663, 983
BstDSI	CCRYGG	1 cut(s)	1112
BstEII	GGTNACC	1 cut(s)	944
BstF5I	GGATG	3 cut(s)	371, 747, 1098
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	8 cut(s)	241, 334, 420, 553, 727, 768, 837, 965
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	8 cut(s)	238, 331, 417, 550, 724, 765, 834, 962
BstMWI	GCNNNNNNNGC	5 cut(s)	64, 368, 404, 626, 1050
BstNI	CCWGG	7 cut(s)	161, 212, 314, 425, 482, 530, 541
BstNSI	RCATGY	1 cut(s)	520
BstPI	GGTNACC	1 cut(s)	944
BstSCI	CCNGG	9 cut(s)	140, 159, 210, 312, 324, 423, 480, 528, 539
BstSFI	CTRYAG	2 cut(s)	413, 809
BstSLI	GKGCMC	1 cut(s)	1081
BstV1I	GCAGC	3 cut(s)	176, 179, 451
BstV2I	GAAGAC	1 cut(s)	811
BstX2I	RGATCY	1 cut(s)	238
BstXI	CCANNNNNNTGG	3 cut(s)	112, 258, 1165
BstYI	RGATCY	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	983
BsuI	GTATCC	1 cut(s)	320
BtgI	CCRYGG	1 cut(s)	1112
BtsCI	GGATG	3 cut(s)	371, 747, 1098
BtsI	GCAGTG	2 cut(s)	865, 1170
BtsIMutI	CAGTG	5 cut(s)	304, 463, 865, 1133, 1170
BveI	ACCTGC	3 cut(s)	49, 78, 398
Cac8I	GCNNGC	3 cut(s)	8, 437, 627
CciI	TCATGA	1 cut(s)	837
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	5 cut(s)	102, 157, 657, 745, 1015
CseI	GACGC	1 cut(s)	620
CsiI	ACCWGGT	1 cut(s)	480
Csp6I	GTAC	4 cut(s)	133, 346, 391, 853
CviAII	CATG	7 cut(s)	517, 738, 763, 838, 950, 1009, 1113
CviQI	GTAC	4 cut(s)	133, 346, 391, 853
DdeI	CTNAG	6 cut(s)	446, 465, 535, 621, 663, 983
DpnI	GATC	8 cut(s)	240, 333, 419, 552, 726, 767, 836, 964
DpnII	GATC	8 cut(s)	238, 331, 417, 550, 724, 765, 834, 962
DrdI	GACNNNNNNGTC	2 cut(s)	335, 791
DseDI	GACNNNNNNGTC	2 cut(s)	335, 791
EaeI	YGGCCR	2 cut(s)	1001, 1115
Eam1104I	CTCTTC	1 cut(s)	853
EarI	CTCTTC	1 cut(s)	853
EciI	GGCGGA	1 cut(s)	237
Eco130I	CCWWGG	2 cut(s)	1073, 1112
Eco147I	AGGCCT	1 cut(s)	533
Eco24I	GRGCYC	2 cut(s)	513, 961
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	745
Eco57I	CTGAAG	2 cut(s)	439, 902
Eco81I	CCTNAGG	1 cut(s)	983
Eco91I	GGTNACC	1 cut(s)	944
EcoO65I	GGTNACC	1 cut(s)	944
EcoRII	CCWGG	7 cut(s)	159, 210, 312, 423, 480, 528, 539
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	2 cut(s)	1073, 1112
EcoT38I	GRGCYC	2 cut(s)	513, 961
ErhI	CCWWGG	2 cut(s)	1073, 1112
FaeI	CATG	7 cut(s)	520, 741, 766, 841, 953, 1012, 1116
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	7 cut(s)	516, 737, 762, 837, 949, 1008, 1112
FblI	GTMKAC	2 cut(s)	339, 412
Fnu4HI	GCNGC	4 cut(s)	18, 165, 168, 440
FokI	GGATG	3 cut(s)	358, 754, 1085
FriOI	GRGCYC	2 cut(s)	513, 961
Fsp4HI	GCNGC	4 cut(s)	18, 165, 168, 440
FspBI	CTAG	4 cut(s)	230, 431, 687, 1019
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	4 cut(s)	18, 165, 168, 440
GsaI	CCCAGC	1 cut(s)	116
HapII	CCGG	5 cut(s)	142, 326, 782, 896, 954
HgaI	GACGC	1 cut(s)	620
HhaI	GCGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	612
Hin1II	CATG	7 cut(s)	520, 741, 766, 841, 953, 1012, 1116
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	3 cut(s)	185, 215, 461
HpaII	CCGG	5 cut(s)	142, 326, 782, 896, 954
HphI	GGTGA	4 cut(s)	22, 38, 210, 412
Hpy166II	GTNNAC	4 cut(s)	340, 413, 478, 1151
Hpy188I	TCNGA	3 cut(s)	184, 555, 882
Hpy188III	TCNNGA	1 cut(s)	838
Hpy8I	GTNNAC	4 cut(s)	340, 413, 478, 1151
Hpy99I	CGWCG	1 cut(s)	773
HpyAV	CCTTC	3 cut(s)	373, 896, 913
HpyCH4III	ACNGT	4 cut(s)	703, 721, 813, 1173
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	6 cut(s)	67, 439, 629, 971, 1064, 1109
HpyF10VI	GCNNNNNNNGC	5 cut(s)	64, 368, 404, 626, 1050
HpyF3I	CTNAG	6 cut(s)	446, 465, 535, 621, 663, 983
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	612
Hsp92II	CATG	7 cut(s)	520, 741, 766, 841, 953, 1012, 1116
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	8 cut(s)	238, 331, 417, 550, 724, 765, 834, 962
LmnI	GCTCC	3 cut(s)	302, 508, 956
Lsp1109I	GCAGC	3 cut(s)	176, 179, 451
LweI	GCATC	3 cut(s)	29, 380, 638
MabI	ACCWGGT	1 cut(s)	480
MaeI	CTAG	4 cut(s)	230, 431, 687, 1019
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	4 cut(s)	491, 889, 905, 944
MalI	GATC	8 cut(s)	240, 333, 419, 552, 726, 767, 836, 964
MboI	GATC	8 cut(s)	238, 331, 417, 550, 724, 765, 834, 962
MboII	GAAGA	3 cut(s)	445, 816, 870
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	3 cut(s)	513, 961, 1081
MlsI	TGGCCA	1 cut(s)	1003
MluCI	AATT	6 cut(s)	93, 189, 318, 356, 750, 848
MluNI	TGGCCA	1 cut(s)	1003
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	309, 399
Mox20I	TGGCCA	1 cut(s)	1003
MscI	TGGCCA	1 cut(s)	1003
MseI	TTAA	4 cut(s)	92, 96, 153, 815
MslI	CAYNNNNRTG	3 cut(s)	836, 933, 1163
Msp20I	TGGCCA	1 cut(s)	1003
MspA1I	CMGCKG	1 cut(s)	489
MspI	CCGG	5 cut(s)	142, 326, 782, 896, 954
MspR9I	CCNGG	9 cut(s)	142, 161, 212, 314, 326, 425, 482, 530, 541
MvaI	CCWGG	7 cut(s)	161, 212, 314, 425, 482, 530, 541
MwoI	GCNNNNNNNGC	5 cut(s)	64, 368, 404, 626, 1050
NciI	CCSGG	2 cut(s)	142, 326
NcoI	CCATGG	1 cut(s)	1112
NdeII	GATC	8 cut(s)	238, 331, 417, 550, 724, 765, 834, 962
NlaIII	CATG	7 cut(s)	520, 741, 766, 841, 953, 1012, 1116
NlaIV	GGNNCC	5 cut(s)	510, 658, 747, 958, 1080
NmuCI	GTSAC	1 cut(s)	905
NspI	RCATGY	1 cut(s)	520
OliI	CACNNNNGTG	2 cut(s)	933, 1163
PacI	TTAATTAA	1 cut(s)	96
PagI	TCATGA	1 cut(s)	837
PceI	AGGCCT	1 cut(s)	533
PciI	ACATGT	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	3 cut(s)	276, 675, 792
PfeI	GAWTC	2 cut(s)	215, 461
PfoI	TCCNGGA	1 cut(s)	140
PkrI	GCNGC	4 cut(s)	19, 166, 169, 441
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PscI	ACATGT	1 cut(s)	516
Psp6I	CCWGG	7 cut(s)	159, 210, 312, 423, 480, 528, 539
PspEI	GGTNACC	1 cut(s)	944
PspFI	CCCAGC	1 cut(s)	112
PspGI	CCWGG	7 cut(s)	159, 210, 312, 423, 480, 528, 539
PspN4I	GGNNCC	5 cut(s)	510, 658, 747, 958, 1080
PspPI	GGNCC	5 cut(s)	102, 157, 657, 745, 1015
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	4 cut(s)	134, 347, 392, 854
RsaNI	GTAC	4 cut(s)	133, 346, 391, 853
RseI	CAYNNNNRTG	3 cut(s)	836, 933, 1163
SaqAI	TTAA	4 cut(s)	92, 96, 153, 815
SatI	GCNGC	4 cut(s)	18, 165, 168, 440
Sau3AI	GATC	8 cut(s)	238, 331, 417, 550, 724, 765, 834, 962
Sau96I	GGNCC	5 cut(s)	102, 157, 657, 745, 1015
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	9 cut(s)	142, 161, 212, 314, 326, 425, 482, 530, 541
SduI	GDGCHC	3 cut(s)	513, 961, 1081
SexAI	ACCWGGT	1 cut(s)	480
SfaNI	GCATC	3 cut(s)	29, 380, 638
SfcI	CTRYAG	2 cut(s)	413, 809
SinI	GGWCC	1 cut(s)	745
SmiMI	CAYNNNNRTG	3 cut(s)	836, 933, 1163
Sse9I	AATT	6 cut(s)	93, 189, 318, 356, 750, 848
SseBI	AGGCCT	1 cut(s)	533
SsiI	CCGC	5 cut(s)	17, 248, 489, 942, 1082
SspI	AATATT	1 cut(s)	714
SspMI	CTAG	4 cut(s)	230, 431, 687, 1019
StuI	AGGCCT	1 cut(s)	533
StyD4I	CCNGG	9 cut(s)	140, 159, 210, 312, 324, 423, 480, 528, 539
StyI	CCWWGG	2 cut(s)	1073, 1112
TaaI	ACNGT	4 cut(s)	703, 721, 813, 1173
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	7 cut(s)	108, 123, 669, 678, 768, 795, 826
TasI	AATT	6 cut(s)	93, 189, 318, 356, 750, 848
TatI	WGTACW	2 cut(s)	390, 852
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	215, 461
Tru1I	TTAA	4 cut(s)	92, 96, 153, 815
Tru9I	TTAA	4 cut(s)	92, 96, 153, 815
TscAI	CASTG	5 cut(s)	304, 463, 872, 1133, 1170
TseFI	GTSAC	1 cut(s)	905
TseI	GCWGC	3 cut(s)	164, 167, 439
Tsp45I	GTSAC	1 cut(s)	905
TspDTI	ATGAA	3 cut(s)	726, 854, 932
TspRI	CASTG	5 cut(s)	304, 463, 872, 1133, 1170
VpaK11BI	GGWCC	1 cut(s)	745
XapI	RAATTY	1 cut(s)	356
XceI	RCATGY	1 cut(s)	520
XmiI	GTMKAC	2 cut(s)	339, 412
XspI	CTAG	4 cut(s)	230, 431, 687, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.