Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

55731357 .. 55733108

Gene Structure 1752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G028180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGCAGAACCCTGAACACTCGGGGCGCCTCAGTAAGTGGGCGATTGAGCTCAGCGAATTTGACATAGAGTACAAGCCAAGAACCGCCATGAAGGGCCAGGCGGTAGCGGACTTCATCGCTGAACTTACTGAGCGCCACCCGGAACCCGGTACTCAAACCAAGCCCGGAACCGAAATAGTAATCAGTGCAGAGGCAACTCCCCCACAGTCAGATTGGGACCTACATGTGGACGGCTCCGCCTGTGCCAAGGCCAGCGGCGCCGGAGTCATCTTAACCGGACCCGGGGGACTAAACGCAGAATACGCGTTGAAATTCAACTTCAAAGCTTCAAACAATATGGCGAAGTACGAGGCGCTCATCGCCGGCCTACTCCTCGCCATTGACTCAGGAGCTGAAAGCGTCAACATATTCAGCGACTCCCAACTAGTCGTCAACCAGGTCAACGACAGCTTCCAAGCCAAGGACCAGCAACTAGCGGCGTATTTGGGGTACGTAAAAACGTTGCTAAAAAAGTTCAAGTTTCACACAATCACACAAATCCCCAGGGAAAAGAACGCTAAGGCTGATTCCCTAGCGAGACTGGCAACCGCCCAACCACATCAGAGTCCGGCGGACACAAGGGTGGAATATCTTGACAAGCCAAGTATCACAAAGACCCTGGCGGAAATCTTCAACATTCAGGTCAACCCCAGCTGGATGGACGAGATCATTACATATAAAGGCAACGGAACGTTGCCAGAAGATAAGGCAGAACCACTGACGGCAACAACCACCGCCAAGGTAATTCGCTTCCTGTGGAAGAATATCTACTGCCGCTACGGTGTCCCACACACAATCATCACGGACAACGGCACACAGTTCAACAATAACGAGCTCATCTCCTTCACCACCAACTTGGGCACCAAGCTGAGGTTTGCATCTGTCGCCCACCCCCAGACCAACGGCCAGGTCGAAGCGGCGAACAAGATAATAAAAAAGTTGTTAAAAAAGAAGCTCTACAACGCCAAGGGTTTATGGGCGGAAAAGCTCCCAAAGGTCCTGTGGGCCATCCGAACAACTCCAACTTCCGCCACCGGAGAAATCCCTTTTTGTATGATGTTCGGCACAGAGGCTGTCTTACCCATTGAAGTCACTCAACCTACCGCTAGAGTCGAAGGCTACGGGCCAGAAACCAACAGCGCCGGCGTCAACTTGGACAGGGACCTCCTAGAAGAGAAAAGGCTCGAGGCCCATTTGCACAATCTACAAAACAAGCAGCGGGTATCACGTTTTTACAACGCCAGAGTCAAGGCCCGGAACCTCCAACTGGGGACTCGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

440

Amino Acids

48.68

Weight (kDa)

8.93

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	82 - 194	1.2e-18	Reverse transcriptase-like
rve	PF00665	256 - 311	9.7e-06	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	24, 257, 899
AccII	CGCG	1 cut(s)	305
AclI	AACGTT	2 cut(s)	500, 731
AcoI	YGGCCR	1 cut(s)	943
AcsI	RAATTY	2 cut(s)	56, 311
AcyI	GRCGYC	3 cut(s)	25, 258, 1185
AfaI	GTAC	4 cut(s)	71, 151, 347, 491
AfiI	CCNNNNNNNGG	6 cut(s)	146, 226, 282, 460, 909, 1306
AflIII	ACRYGT	2 cut(s)	223, 303
AgsI	TTSAA	8 cut(s)	310, 316, 322, 330, 517, 673, 862, 1127
AhlI	ACTAGT	1 cut(s)	424
AjnI	CCWGG	5 cut(s)	96, 435, 542, 657, 945
AleI	CACNNNNGTG	1 cut(s)	620
AluBI	AGCT	9 cut(s)	49, 326, 392, 450, 693, 874, 907, 994, 1027
AluI	AGCT	9 cut(s)	49, 326, 392, 450, 693, 874, 907, 994, 1027
Alw21I	GWGCWC	2 cut(s)	51, 876
Alw26I	GTCTC	1 cut(s)	571
AlwNI	CAGNNNCTG	2 cut(s)	392, 1112
Ama87I	CYCGRG	3 cut(s)	19, 281, 1223
AoxI	GGCC	8 cut(s)	94, 249, 364, 943, 1044, 1163, 1227, 1290
ApeKI	GCWGC	1 cut(s)	1255
ApoI	RAATTY	2 cut(s)	56, 311
AspLEI	GCGC	5 cut(s)	27, 135, 260, 355, 1181
AsuC2I	CCSGG	6 cut(s)	140, 147, 165, 282, 283, 1294
AsuHPI	GGTGA	1 cut(s)	877
AvaI	CYCGRG	3 cut(s)	19, 281, 1223
AvaII	GGWCC	5 cut(s)	217, 278, 463, 1036, 1201
BaeGI	GKGCMC	1 cut(s)	902
BanI	GGYRCC	3 cut(s)	24, 257, 899
BanII	GRGCYC	2 cut(s)	51, 876
BarI	GAAGNNNNNNTAC	2 cut(s)	791, 823
Bbv12I	GWGCWC	2 cut(s)	51, 876
BbvCI	CCTCAGC	1 cut(s)	908
BbvI	GCAGC	1 cut(s)	1267
BccI	CCATC	2 cut(s)	691, 1055
BceAI	ACGGC	4 cut(s)	247, 777, 865, 958
BciT130I	CCWGG	5 cut(s)	98, 437, 544, 659, 947
BcnI	CCSGG	6 cut(s)	140, 147, 165, 282, 283, 1294
BcoDI	GTCTC	1 cut(s)	571
BcuI	ACTAGT	1 cut(s)	424
BfaI	CTAG	5 cut(s)	425, 473, 572, 1146, 1208
BfoI	RGCGCY	5 cut(s)	28, 136, 261, 356, 1182
BisI	GCNGC	5 cut(s)	256, 477, 814, 957, 1256
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	5 cut(s)	257, 478, 815, 958, 1257
Bme18I	GGWCC	5 cut(s)	217, 278, 463, 1036, 1201
BmeT110I	CYCGRG	3 cut(s)	19, 281, 1223
BmrI	ACTGGG	1 cut(s)	1316
BmsI	GCATC	1 cut(s)	926
BmuI	ACTGGG	1 cut(s)	1316
BplI	GAGNNNNNCTC	2 cut(s)	863, 895
Bpu10I	CCTNAGC	2 cut(s)	558, 908
Bpu1102I	GCTNAGC	1 cut(s)	50
BpuMI	CCSGG	6 cut(s)	140, 147, 165, 282, 283, 1294
BsaAI	YACGTR	1 cut(s)	493
BsaHI	GRCGYC	3 cut(s)	25, 258, 1185
BsaJI	CCNNGG	9 cut(s)	246, 281, 282, 459, 542, 543, 657, 777, 1005
BsaWI	WCCGGW	2 cut(s)	275, 1073
Bsc4I	CCNNNNNNNGG	6 cut(s)	146, 226, 282, 460, 909, 1306
Bse118I	RCCGGY	2 cut(s)	362, 1181
Bse1I	ACTGG	2 cut(s)	585, 1311
BseBI	CCWGG	5 cut(s)	98, 437, 544, 659, 947
BseDI	CCNNGG	9 cut(s)	246, 281, 282, 459, 542, 543, 657, 777, 1005
BseGI	GGATG	2 cut(s)	702, 1047
BseLI	CCNNNNNNNGG	6 cut(s)	146, 226, 282, 460, 909, 1306
BseMII	CTCAG	5 cut(s)	43, 64, 120, 399, 899
BseNI	ACTGG	2 cut(s)	585, 1311
BseRI	GAGGAG	1 cut(s)	362
BseSI	GKGCMC	1 cut(s)	902
BseXI	GCAGC	1 cut(s)	1267
BseYI	CCCAGC	1 cut(s)	689
BsgI	GTGCAG	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	8 cut(s)	96, 251, 366, 945, 1046, 1165, 1229, 1292
BshNI	GGYRCC	3 cut(s)	24, 257, 899
BsiHKAI	GWGCWC	2 cut(s)	51, 876
BsiHKCI	CYCGRG	3 cut(s)	19, 281, 1223
BslFI	GGGAC	4 cut(s)	230, 300, 809, 1214
BslI	CCNNNNNNNGG	6 cut(s)	146, 226, 282, 460, 909, 1306
BsmAI	GTCTC	1 cut(s)	571
BsmFI	GGGAC	4 cut(s)	230, 300, 809, 1214
BsnI	GGCC	8 cut(s)	96, 251, 366, 945, 1046, 1165, 1229, 1292
BsoBI	CYCGRG	3 cut(s)	19, 281, 1223
Bsp1286I	GDGCHC	3 cut(s)	51, 876, 902
Bsp143I	GATC	1 cut(s)	705
Bsp1720I	GCTNAGC	1 cut(s)	50
BspANI	GGCC	8 cut(s)	96, 251, 366, 945, 1046, 1165, 1229, 1292
BspCNI	CTCAG	5 cut(s)	42, 63, 121, 398, 900
BspFNI	CGCG	1 cut(s)	305
BspHI	TCATGA	1 cut(s)	1319
BspT107I	GGYRCC	3 cut(s)	24, 257, 899
BsrFI	RCCGGY	2 cut(s)	362, 1181
BsrI	ACTGG	2 cut(s)	585, 1311
BssAI	RCCGGY	2 cut(s)	362, 1181
BssECI	CCNNGG	9 cut(s)	246, 281, 282, 459, 542, 543, 657, 777, 1005
BssMI	GATC	1 cut(s)	705
BssNI	GRCGYC	3 cut(s)	25, 258, 1185
BssT1I	CCWWGG	4 cut(s)	246, 459, 777, 1005
Bst2UI	CCWGG	5 cut(s)	98, 437, 544, 659, 947
Bst4CI	ACNGT	3 cut(s)	207, 821, 858
Bst6I	CTCTTC	1 cut(s)	1206
BstACI	GRCGYC	3 cut(s)	25, 258, 1185
BstBAI	YACGTR	1 cut(s)	493
BstC8I	GCNNGC	3 cut(s)	253, 364, 1183
BstDEI	CTNAG	6 cut(s)	29, 50, 129, 385, 558, 908
BstF5I	GGATG	2 cut(s)	702, 1047
BstFNI	CGCG	1 cut(s)	305
BstH2I	RGCGCY	5 cut(s)	28, 136, 261, 356, 1182
BstHHI	GCGC	5 cut(s)	27, 135, 260, 355, 1181
BstKTI	GATC	1 cut(s)	708
BstMAI	GTCTC	1 cut(s)	571
BstMBI	GATC	1 cut(s)	705
BstMWI	GCNNNNNNNGC	5 cut(s)	257, 302, 359, 581, 923
BstNI	CCWGG	5 cut(s)	98, 437, 544, 659, 947
BstNSI	RCATGY	1 cut(s)	227
BstSLI	GKGCMC	1 cut(s)	902
BstSNI	TACGTA	1 cut(s)	493
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	1267
BstXI	CCANNNNNNTGG	2 cut(s)	697, 895
BsuRI	GGCC	8 cut(s)	96, 251, 366, 945, 1046, 1165, 1229, 1292
BtgZI	GCGATG	2 cut(s)	100, 343
BtsCI	GGATG	2 cut(s)	702, 1047
BtsIMutI	CAGTG	2 cut(s)	190, 755
Cac8I	GCNNGC	3 cut(s)	253, 364, 1183
CaiI	CAGNNNCTG	2 cut(s)	392, 1112
CciI	TCATGA	1 cut(s)	1319
CfoI	GCGC	5 cut(s)	27, 135, 260, 355, 1181
Cfr10I	RCCGGY	2 cut(s)	362, 1181
Cfr9I	CCCGGG	1 cut(s)	281
CseI	GACGC	2 cut(s)	388, 1174
CsiI	ACCWGGT	1 cut(s)	435
Csp6I	GTAC	4 cut(s)	70, 150, 346, 490
CviAII	CATG	3 cut(s)	88, 224, 1320
CviQI	GTAC	4 cut(s)	70, 150, 346, 490
DdeI	CTNAG	6 cut(s)	29, 50, 129, 385, 558, 908
DinI	GGCGCC	2 cut(s)	26, 259
DpnI	GATC	1 cut(s)	707
DpnII	GATC	1 cut(s)	705
EaeI	YGGCCR	1 cut(s)	943
Eam1104I	CTCTTC	1 cut(s)	1206
EarI	CTCTTC	1 cut(s)	1206
EciI	GGCGGA	5 cut(s)	226, 626, 677, 1034, 1057
Ecl136II	GAGCTC	2 cut(s)	49, 874
Eco105I	TACGTA	1 cut(s)	493
Eco130I	CCWWGG	4 cut(s)	246, 459, 777, 1005
Eco24I	GRGCYC	2 cut(s)	51, 876
Eco47I	GGWCC	5 cut(s)	217, 278, 463, 1036, 1201
Eco53kI	GAGCTC	2 cut(s)	49, 874
Eco88I	CYCGRG	3 cut(s)	19, 281, 1223
EcoICRI	GAGCTC	2 cut(s)	49, 874
EcoO109I	RGGNCCY	3 cut(s)	217, 1036, 1201
EcoRII	CCWGG	5 cut(s)	96, 435, 542, 657, 945
EcoT14I	CCWWGG	4 cut(s)	246, 459, 777, 1005
EcoT38I	GRGCYC	2 cut(s)	51, 876
EgeI	GGCGCC	2 cut(s)	26, 259
EheI	GGCGCC	2 cut(s)	26, 259
ErhI	CCWWGG	4 cut(s)	246, 459, 777, 1005
FaeI	CATG	3 cut(s)	91, 227, 1323
FaqI	GGGAC	4 cut(s)	230, 300, 809, 1214
FatI	CATG	3 cut(s)	87, 223, 1319
FauI	CCCGC	1 cut(s)	1251
Fnu4HI	GCNGC	5 cut(s)	256, 477, 814, 957, 1256
FokI	GGATG	2 cut(s)	709, 1034
FriOI	GRGCYC	2 cut(s)	51, 876
Fsp4HI	GCNGC	5 cut(s)	256, 477, 814, 957, 1256
FspBI	CTAG	5 cut(s)	425, 473, 572, 1146, 1208
GlaI	GCGC	5 cut(s)	26, 134, 259, 354, 1180
GluI	GCNGC	5 cut(s)	256, 477, 814, 957, 1256
GsaI	CCCAGC	1 cut(s)	693
HaeII	RGCGCY	5 cut(s)	28, 136, 261, 356, 1182
HaeIII	GGCC	8 cut(s)	96, 251, 366, 945, 1046, 1165, 1229, 1292
HgaI	GACGC	2 cut(s)	388, 1174
HhaI	GCGC	5 cut(s)	27, 135, 260, 355, 1181
Hin1I	GRCGYC	3 cut(s)	25, 258, 1185
Hin1II	CATG	3 cut(s)	91, 227, 1323
Hin6I	GCGC	5 cut(s)	25, 133, 258, 353, 1179
HinP1I	GCGC	5 cut(s)	25, 133, 258, 353, 1179
HincII	GTYRAC	5 cut(s)	403, 433, 442, 685, 1189
HindII	GTYRAC	5 cut(s)	403, 433, 442, 685, 1189
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	8 cut(s)	264, 383, 416, 566, 604, 1149, 1284, 1312
HphI	GGTGA	1 cut(s)	877
Hpy166II	GTNNAC	6 cut(s)	229, 403, 433, 442, 685, 1189
Hpy188I	TCNGA	3 cut(s)	211, 603, 1052
Hpy188III	TCNNGA	3 cut(s)	387, 632, 1320
Hpy8I	GTNNAC	6 cut(s)	229, 403, 433, 442, 685, 1189
HpyAV	CCTTC	3 cut(s)	85, 892, 1148
HpyCH4III	ACNGT	3 cut(s)	207, 821, 858
HpyCH4IV	ACGT	4 cut(s)	492, 500, 731, 1267
HpyCH4V	TGCA	4 cut(s)	4, 188, 917, 1237
HpyF10VI	GCNNNNNNNGC	5 cut(s)	257, 302, 359, 581, 923
HpyF3I	CTNAG	6 cut(s)	29, 50, 129, 385, 558, 908
HpySE526I	ACGT	4 cut(s)	492, 500, 731, 1267
Hsp92I	GRCGYC	3 cut(s)	25, 258, 1185
Hsp92II	CATG	3 cut(s)	91, 227, 1323
HspAI	GCGC	5 cut(s)	25, 133, 258, 353, 1179
KasI	GGCGCC	2 cut(s)	24, 257
KroI	GCCGGC	2 cut(s)	362, 1181
KroNI	GCCGGC	2 cut(s)	364, 1183
Kzo9I	GATC	1 cut(s)	705
LmnI	GCTCC	3 cut(s)	239, 389, 1032
Lsp1109I	GCAGC	1 cut(s)	1267
LweI	GCATC	1 cut(s)	926
MabI	ACCWGGT	1 cut(s)	435
MaeI	CTAG	5 cut(s)	425, 473, 572, 1146, 1208
MaeII	ACGT	4 cut(s)	492, 500, 731, 1267
MaeIII	GTNAC	1 cut(s)	1129
MalI	GATC	1 cut(s)	707
MboI	GATC	1 cut(s)	705
MboII	GAAGA	4 cut(s)	661, 752, 811, 1223
MhlI	GDGCHC	3 cut(s)	51, 876, 902
MluCI	AATT	3 cut(s)	56, 311, 783
MluI	ACGCGT	1 cut(s)	303
Mly113I	GGCGCC	2 cut(s)	25, 258
MlyI	GAGTC	7 cut(s)	273, 377, 410, 613, 1158, 1293, 1306
MmeI	TCCRAC	1 cut(s)	1085
MnlI	CCTC	9 cut(s)	38, 184, 343, 383, 903, 1102, 1214, 1219, 1310
MreI	CGCCGGCG	1 cut(s)	1181
MroNI	GCCGGC	2 cut(s)	362, 1181
MseI	TTAA	2 cut(s)	272, 983
MslI	CAYNNNNRTG	1 cut(s)	620
MspA1I	CMGCKG	3 cut(s)	255, 693, 1258
MvaI	CCWGG	5 cut(s)	98, 437, 544, 659, 947
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	5 cut(s)	257, 302, 359, 581, 923
NaeI	GCCGGC	2 cut(s)	364, 1183
NarI	GGCGCC	2 cut(s)	25, 258
NciI	CCSGG	6 cut(s)	140, 147, 165, 282, 283, 1294
NdeII	GATC	1 cut(s)	705
NgoMIV	GCCGGC	2 cut(s)	362, 1181
NlaIII	CATG	3 cut(s)	91, 227, 1323
NmuCI	GTSAC	1 cut(s)	1129
NspI	RCATGY	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	620
PaeR7I	CTCGAG	1 cut(s)	1223
PagI	TCATGA	1 cut(s)	1319
PasI	CCCWGGG	1 cut(s)	543
PciI	ACATGT	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	948
PdiI	GCCGGC	2 cut(s)	364, 1183
PfeI	GAWTC	1 cut(s)	566
PflFI	GACNNNGTC	1 cut(s)	1315
PkrI	GCNGC	5 cut(s)	257, 478, 815, 958, 1257
PleI	GAGTC	7 cut(s)	272, 377, 410, 612, 1157, 1292, 1306
PluTI	GGCGCC	2 cut(s)	28, 261
PpsI	GAGTC	7 cut(s)	272, 377, 410, 612, 1157, 1292, 1306
Ppu21I	YACGTR	1 cut(s)	493
PpuMI	RGGWCCY	3 cut(s)	217, 1036, 1201
PscI	ACATGT	1 cut(s)	223
Psp124BI	GAGCTC	2 cut(s)	51, 876
Psp1406I	AACGTT	2 cut(s)	500, 731
Psp5II	RGGWCCY	3 cut(s)	217, 1036, 1201
Psp6I	CCWGG	5 cut(s)	96, 435, 542, 657, 945
PspFI	CCCAGC	1 cut(s)	689
PspGI	CCWGG	5 cut(s)	96, 435, 542, 657, 945
PspPPI	RGGWCCY	3 cut(s)	217, 1036, 1201
PspXI	VCTCGAGB	1 cut(s)	1223
PstNI	CAGNNNCTG	2 cut(s)	392, 1112
PsyI	GACNNNGTC	1 cut(s)	1315
PvuII	CAGCTG	1 cut(s)	693
RsaI	GTAC	4 cut(s)	71, 151, 347, 491
RsaNI	GTAC	4 cut(s)	70, 150, 346, 490
RseI	CAYNNNNRTG	1 cut(s)	620
SacI	GAGCTC	2 cut(s)	51, 876
SaqAI	TTAA	2 cut(s)	272, 983
SatI	GCNGC	5 cut(s)	256, 477, 814, 957, 1256
Sau3AI	GATC	1 cut(s)	705
SchI	GAGTC	7 cut(s)	273, 377, 410, 613, 1158, 1293, 1306
SduI	GDGCHC	3 cut(s)	51, 876, 902
SexAI	ACCWGGT	1 cut(s)	435
SfaNI	GCATC	1 cut(s)	926
SfoI	GGCGCC	2 cut(s)	26, 259
Sfr274I	CTCGAG	1 cut(s)	1223
SgrAI	CRCCGGYG	1 cut(s)	1181
SinI	GGWCC	5 cut(s)	217, 278, 463, 1036, 1201
SlaI	CTCGAG	1 cut(s)	1223
SmaI	CCCGGG	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	1223
SmoI	CTYRAG	1 cut(s)	1223
SnaBI	TACGTA	1 cut(s)	493
SpeI	ACTAGT	1 cut(s)	424
Sse9I	AATT	3 cut(s)	56, 311, 783
SspDI	GGCGCC	2 cut(s)	24, 257
SspMI	CTAG	5 cut(s)	425, 473, 572, 1146, 1208
SstI	GAGCTC	2 cut(s)	51, 876
StyI	CCWWGG	4 cut(s)	246, 459, 777, 1005
TaaI	ACNGT	3 cut(s)	207, 821, 858
TaiI	ACGT	4 cut(s)	495, 503, 734, 1270
TaqI	TCGA	3 cut(s)	951, 1152, 1224
TaqII	GACCGA	1 cut(s)	1305
TasI	AATT	3 cut(s)	56, 311, 783
TatI	WGTACW	1 cut(s)	69
TauI	GCSGC	4 cut(s)	258, 479, 816, 959
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	2 cut(s)	272, 983
Tru9I	TTAA	2 cut(s)	272, 983
TscAI	CASTG	2 cut(s)	190, 762
TseFI	GTSAC	1 cut(s)	1129
TseI	GCWGC	1 cut(s)	1255
Tsp45I	GTSAC	1 cut(s)	1129
TspDTI	ATGAA	2 cut(s)	103, 104
TspGWI	ACGGA	2 cut(s)	741, 857
TspMI	CCCGGG	1 cut(s)	281
TspRI	CASTG	2 cut(s)	190, 762
Tth111I	GACNNNGTC	1 cut(s)	1315
VpaK11BI	GGWCC	5 cut(s)	217, 278, 463, 1036, 1201
XapI	RAATTY	2 cut(s)	56, 311
XceI	RCATGY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	2 cut(s)	210, 1038
XhoI	CTCGAG	1 cut(s)	1223
XmaI	CCCGGG	1 cut(s)	281
XspI	CTAG	5 cut(s)	425, 473, 572, 1146, 1208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.