Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

2569074 .. 2569780

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02201.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTTTAAAGCGCTAAGAGCTGGATACTATTGGCCAACATTAGAGCAAGATGTAAAGGCAGTTGCCCAAGCATGCCTTCACTACCATAAATTTGCAGATTTTGCCCACCGTCCCCCAGTTCCATTATCTGTCATTATTTCCCCAGTCCCTTTCAGCCAGTGGGGACTTGACTTTGTGGGGCGGCTACCCCCAGCCCTAGGACAACTCAAATTTGCTATCGTCCTGGTAGACTATAACACCAAATGGATAGAAGCAGAGCCCCTTGCTACAATCACAACAGAAAAAGTGATCAACTTCCTATGGCGTAATTTATACTGCCGGTTTGGGGTACCACAAGCCATCATCACAGATAATGGGGCACAATTTGACAATGAGACATTCAAAGAATTTCTCTCTGAGCAAGGCACAACAATCTTCTATGCCTCCCCAGCACACCCCCAAACCAATGGCCAGGTGGAAGCTATAAACAAGCTCATCAAGCAAAACCTGAAGAAACGCCTGGAAGATGCTAAAGGGTTATGGGCGGCCAAGCTCCCGGAAGTCCTCTGGACACTTCGTACTACCTCAATAGCAACCACAAGGGAATCCCCGTACCTCTTGACCTATGGCACCGAAGCAGTGAAACCTGTAGATGGAGGTCTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

216

Amino Acids

24.24

Weight (kDa)

7.75

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
rve	PF00665	50 - 146	3.1e-12	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	328
AccB1I	GGYRCC	2 cut(s)	328, 608
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	2 cut(s)	181, 524
AcoI	YGGCCR	3 cut(s)	32, 448, 525
AcsI	RAATTY	3 cut(s)	89, 209, 386
AcuI	CTGAAG	1 cut(s)	509
AfaI	GTAC	3 cut(s)	330, 559, 593
AfeI	AGCGCT	1 cut(s)	12
AfiI	CCNNNNNNNGG	3 cut(s)	197, 325, 632
AgsI	TTSAA	1 cut(s)	382
AjnI	CCWGG	3 cut(s)	222, 450, 498
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AluBI	AGCT	4 cut(s)	20, 461, 472, 532
AluI	AGCT	4 cut(s)	20, 461, 472, 532
Alw26I	GTCTC	2 cut(s)	368, 644
Ama87I	CYCGRG	1 cut(s)	641
Aor51HI	AGCGCT	1 cut(s)	12
AoxI	GGCC	3 cut(s)	32, 448, 525
ApoI	RAATTY	3 cut(s)	89, 209, 386
Asp718I	GGTACC	1 cut(s)	328
AspA2I	CCTAGG	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	13
AsuC2I	CCSGG	1 cut(s)	536
AvaI	CYCGRG	1 cut(s)	641
AvrII	CCTAGG	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	361
BalI	TGGCCA	2 cut(s)	34, 450
BanI	GGYRCC	2 cut(s)	328, 608
BanII	GRGCYC	1 cut(s)	261
BccI	CCATC	2 cut(s)	347, 626
BciT130I	CCWGG	3 cut(s)	224, 452, 500
BciVI	GTATCC	1 cut(s)	17
BclI	TGATCA	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	536
BcoDI	GTCTC	2 cut(s)	368, 644
BfaI	CTAG	1 cut(s)	197
BfmI	CTRYAG	1 cut(s)	627
BfoI	RGCGCY	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	17
BisI	GCNGC	2 cut(s)	182, 525
BlnI	CCTAGG	1 cut(s)	196
BlsI	GCNGC	2 cut(s)	183, 526
Bme1390I	CCNGG	4 cut(s)	224, 452, 500, 536
BmeT110I	CYCGRG	1 cut(s)	641
BmiI	GGNNCC	2 cut(s)	330, 610
BmrFI	CCNGG	4 cut(s)	224, 452, 500, 536
BmrI	ACTGGG	2 cut(s)	110, 137
BmsI	GCATC	1 cut(s)	496
BmuI	ACTGGG	2 cut(s)	110, 137
BpuMI	CCSGG	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 325, 632
Bse118I	RCCGGY	1 cut(s)	318
Bse1I	ACTGG	3 cut(s)	116, 143, 157
BseBI	CCWGG	3 cut(s)	224, 452, 500
BseDI	CCNNGG	1 cut(s)	196
BseLI	CCNNNNNNNGG	3 cut(s)	197, 325, 632
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	3 cut(s)	116, 143, 157
BseSI	GKGCMC	1 cut(s)	361
BseYI	CCCAGC	2 cut(s)	190, 427
BshFI	GGCC	3 cut(s)	34, 450, 527
BshNI	GGYRCC	2 cut(s)	328, 608
BsiHKCI	CYCGRG	1 cut(s)	641
BsiSI	CCGG	2 cut(s)	319, 536
BslFI	GGGAC	3 cut(s)	96, 131, 177
BslI	CCNNNNNNNGG	3 cut(s)	197, 325, 632
BsmAI	GTCTC	2 cut(s)	368, 644
BsmFI	GGGAC	3 cut(s)	96, 131, 177
BsnI	GGCC	3 cut(s)	34, 450, 527
Bso31I	GGTCTC	1 cut(s)	644
BsoBI	CYCGRG	1 cut(s)	641
Bsp1286I	GDGCHC	2 cut(s)	261, 361
Bsp143I	GATC	1 cut(s)	288
BspACI	CCGC	2 cut(s)	181, 524
BspANI	GGCC	3 cut(s)	34, 450, 527
BspCNI	CTCAG	1 cut(s)	388
BspLI	GGNNCC	2 cut(s)	330, 610
BspT107I	GGYRCC	2 cut(s)	328, 608
BspTNI	GGTCTC	1 cut(s)	644
BsrFI	RCCGGY	1 cut(s)	318
BsrI	ACTGG	3 cut(s)	116, 143, 157
BssAI	RCCGGY	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	196
Bst2UI	CCWGG	3 cut(s)	224, 452, 500
Bst4CI	ACNGT	1 cut(s)	110
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	14, 396
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	1 cut(s)	291
BstMAI	GTCTC	2 cut(s)	368, 644
BstMBI	GATC	1 cut(s)	288
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 101, 428, 478
BstNI	CCWGG	3 cut(s)	224, 452, 500
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	4 cut(s)	222, 450, 498, 534
BstSFI	CTRYAG	1 cut(s)	627
BstSLI	GKGCMC	1 cut(s)	361
BstXI	CCANNNNNNTGG	1 cut(s)	446
BsuI	GTATCC	1 cut(s)	17
BsuRI	GGCC	3 cut(s)	34, 450, 527
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	2 cut(s)	164, 624
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	318
Csp6I	GTAC	3 cut(s)	329, 558, 592
CviAII	CATG	1 cut(s)	72
CviQI	GTAC	3 cut(s)	329, 558, 592
DdeI	CTNAG	2 cut(s)	14, 396
DpnI	GATC	1 cut(s)	290
DpnII	GATC	1 cut(s)	288
DraI	TTTAAA	1 cut(s)	7
EaeI	YGGCCR	3 cut(s)	32, 448, 525
Eco130I	CCWWGG	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	644
Eco47III	AGCGCT	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	509
Eco88I	CYCGRG	1 cut(s)	641
EcoRII	CCWGG	3 cut(s)	222, 450, 498
EcoT14I	CCWWGG	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	1 cut(s)	75
FaiI	YATR	9 cut(s)	73, 87, 234, 301, 313, 420, 464, 520, 606
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FaqI	GGGAC	3 cut(s)	96, 131, 177
FatI	CATG	1 cut(s)	71
FbaI	TGATCA	1 cut(s)	288
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	182, 525
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	182, 525
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	2 cut(s)	182, 525
GsaI	CCCAGC	2 cut(s)	194, 431
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	3 cut(s)	34, 450, 527
HapII	CCGG	2 cut(s)	319, 536
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	1 cut(s)	75
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	1 cut(s)	584
HpaII	CCGG	2 cut(s)	319, 536
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	397
Hpy188III	TCNNGA	3 cut(s)	547, 598, 641
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 101, 428, 478
HpyF3I	CTNAG	2 cut(s)	14, 396
Hsp92II	CATG	1 cut(s)	75
HspAI	GCGC	1 cut(s)	11
KpnI	GGTACC	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	537
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	1 cut(s)	197
MalI	GATC	1 cut(s)	290
MboI	GATC	1 cut(s)	288
MboII	GAAGA	3 cut(s)	406, 502, 515
MhlI	GDGCHC	2 cut(s)	261, 361
MlsI	TGGCCA	2 cut(s)	34, 450
MluCI	AATT	5 cut(s)	89, 209, 307, 362, 386
MluNI	TGGCCA	2 cut(s)	34, 450
MnlI	CCTC	5 cut(s)	433, 554, 574, 605, 629
Mox20I	TGGCCA	2 cut(s)	34, 450
MscI	TGGCCA	2 cut(s)	34, 450
MseI	TTAA	1 cut(s)	6
Msp20I	TGGCCA	2 cut(s)	34, 450
MspI	CCGG	2 cut(s)	319, 536
MspR9I	CCNGG	4 cut(s)	224, 452, 500, 536
MvaI	CCWGG	3 cut(s)	224, 452, 500
MwoI	GCNNNNNNNGC	4 cut(s)	17, 101, 428, 478
NciI	CCSGG	1 cut(s)	536
NdeII	GATC	1 cut(s)	288
NlaIII	CATG	1 cut(s)	75
NlaIV	GGNNCC	2 cut(s)	330, 610
NspI	RCATGY	1 cut(s)	75
PaeI	GCATGC	1 cut(s)	75
PaeR7I	CTCGAG	1 cut(s)	641
PfeI	GAWTC	1 cut(s)	584
PfoI	TCCNGGA	1 cut(s)	534
PkrI	GCNGC	2 cut(s)	183, 526
Psp6I	CCWGG	3 cut(s)	222, 450, 498
PspFI	CCCAGC	2 cut(s)	190, 427
PspGI	CCWGG	3 cut(s)	222, 450, 498
PspN4I	GGNNCC	2 cut(s)	330, 610
RsaI	GTAC	3 cut(s)	330, 559, 593
RsaNI	GTAC	3 cut(s)	329, 558, 592
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	2 cut(s)	182, 525
Sau3AI	GATC	1 cut(s)	288
ScrFI	CCNGG	4 cut(s)	224, 452, 500, 536
SduI	GDGCHC	2 cut(s)	261, 361
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	627
Sfr274I	CTCGAG	1 cut(s)	641
SlaI	CTCGAG	1 cut(s)	641
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
SphI	GCATGC	1 cut(s)	75
Sse9I	AATT	5 cut(s)	89, 209, 307, 362, 386
SsiI	CCGC	2 cut(s)	181, 524
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	4 cut(s)	222, 450, 498, 534
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	110
TaqI	TCGA	1 cut(s)	642
TasI	AATT	5 cut(s)	89, 209, 307, 362, 386
TauI	GCSGC	2 cut(s)	184, 527
TfiI	GAWTC	1 cut(s)	584
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	2 cut(s)	164, 624
TspRI	CASTG	2 cut(s)	164, 624
XapI	RAATTY	3 cut(s)	89, 209, 386
XceI	RCATGY	1 cut(s)	75
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XhoI	CTCGAG	1 cut(s)	641
XmaJI	CCTAGG	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.