Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

57836242 .. 57836505

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00377330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGCACCAAAGATCGGATATCTTTGAGGACCCTAGAGATGATGAGAAGAAATATGTCAAAAAAGAGCCCGTCAACTCGGAAACTTCCTTGAAAGCTATCAACATCTCCTATGAACACCCCGAGCGGACGGTCCGCATCGTCGCTCGGCTTGACCCGGAGGTAGTAGCGGAACTCACTCGGTTCCTACGTGAAAACGCTGCTGTCTTTGCATGGTCCTACGCCGACATGCCGGCGTCTCCCCCGAGATTATCACGCACAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

87

Amino Acids

10.13

Weight (kDa)

6.1

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	124
AciI	CCGC	3 cut(s)	124, 133, 167
AcyI	GRCGYC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	91
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw26I	GTCTC	1 cut(s)	240
Ama87I	CYCGRG	2 cut(s)	119, 241
ApeKI	GCWGC	1 cut(s)	197
AspS9I	GGNCC	3 cut(s)	28, 130, 213
AsuC2I	CCSGG	1 cut(s)	155
AvaI	CYCGRG	2 cut(s)	119, 241
AvaII	GGWCC	3 cut(s)	28, 130, 213
BanII	GRGCYC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	1 cut(s)	33
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	3 cut(s)	28, 130, 213
BmeT110I	CYCGRG	2 cut(s)	119, 241
BmgT120I	GGNCC	3 cut(s)	28, 130, 213
BmiI	GGNNCC	2 cut(s)	30, 182
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
Bse118I	RCCGGY	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	184
BsiHKCI	CYCGRG	2 cut(s)	119, 241
BsiSI	CCGG	2 cut(s)	155, 230
BslI	CCNNNNNNNGG	1 cut(s)	13
BsmAI	GTCTC	1 cut(s)	240
BsmBI	CGTCTC	1 cut(s)	240
BsoBI	CYCGRG	2 cut(s)	119, 241
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	11
BspACI	CCGC	3 cut(s)	124, 133, 167
BspLI	GGNNCC	2 cut(s)	30, 182
BsrBI	CCGCTC	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	229
BssMI	GATC	1 cut(s)	11
BssNI	GRCGYC	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	130
BstACI	GRCGYC	1 cut(s)	233
BstBAI	YACGTR	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	231
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	3 cut(s)	28, 130, 213
CpoI	CGGWCCG	1 cut(s)	130
CseI	GACGC	1 cut(s)	222
CspI	CGGWCCG	1 cut(s)	130
CviAII	CATG	2 cut(s)	210, 226
CviJI	RGCY	3 cut(s)	67, 95, 148
CviKI_1	RGCY	3 cut(s)	67, 95, 148
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	69
Eco32I	GATATC	1 cut(s)	19
Eco47I	GGWCC	3 cut(s)	28, 130, 213
Eco88I	CYCGRG	2 cut(s)	119, 241
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	69
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	2 cut(s)	213, 229
FaiI	YATR	4 cut(s)	54, 111, 211, 227
FatI	CATG	2 cut(s)	209, 225
Fnu4HI	GCNGC	1 cut(s)	198
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	1 cut(s)	198
HapII	CCGG	2 cut(s)	155, 230
HgaI	GACGC	1 cut(s)	222
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	2 cut(s)	213, 229
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HpaII	CCGG	2 cut(s)	155, 230
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	16, 79
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	4, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpySE526I	ACGT	1 cut(s)	187
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	2 cut(s)	213, 229
KroI	GCCGGC	1 cut(s)	229
KroNI	GCCGGC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	11
LpnPI	CCDG	2 cut(s)	168, 243
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	1 cut(s)	187
MalI	GATC	1 cut(s)	13
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	1 cut(s)	11
MboII	GAAGA	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	1 cut(s)	259
MnlI	CCTC	2 cut(s)	19, 151
MroNI	GCCGGC	1 cut(s)	229
MseI	TTAA	1 cut(s)	262
MspI	CCGG	2 cut(s)	155, 230
MspR9I	CCNGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	206
NaeI	GCCGGC	1 cut(s)	231
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	1 cut(s)	11
NgoMIV	GCCGGC	1 cut(s)	229
NlaIII	CATG	2 cut(s)	213, 229
NlaIV	GGNNCC	2 cut(s)	30, 182
NmeAIII	GCCGAG	1 cut(s)	124
NspI	RCATGY	1 cut(s)	229
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PdiI	GCCGGC	1 cut(s)	231
PkrI	GCNGC	1 cut(s)	199
Ppu21I	YACGTR	1 cut(s)	188
PpuMI	RGGWCCY	1 cut(s)	28
Psp5II	RGGWCCY	1 cut(s)	28
PspN4I	GGNNCC	2 cut(s)	30, 182
PspPI	GGNCC	3 cut(s)	28, 130, 213
PspPPI	RGGWCCY	1 cut(s)	28
Rsr2I	CGGWCCG	1 cut(s)	130
RsrII	CGGWCCG	1 cut(s)	130
SaqAI	TTAA	1 cut(s)	262
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	11
Sau96I	GGNCC	3 cut(s)	28, 130, 213
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	3 cut(s)	97, 162, 190
SfaNI	GCATC	1 cut(s)	144
SinI	GGWCC	3 cut(s)	28, 130, 213
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	3 cut(s)	124, 133, 167
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	190
TasI	AATT	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	262
Tru9I	TTAA	1 cut(s)	262
TseI	GCWGC	1 cut(s)	197
TspDTI	ATGAA	1 cut(s)	126
VpaK11BI	GGWCC	3 cut(s)	28, 130, 213
XceI	RCATGY	1 cut(s)	229
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.