Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

44082623 .. 44084650

Gene Structure 2028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G028980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1908 bp

ATGCTCTACGTATATCTGGCGGCATCGTCAACTGCTGTGAGCTCAGTCCTGATTAGGAAGGACTCCGATTGCGAGTACCCAGTGTATTACGCTGGAAAAGGTTACACTGGTGCAGAATCCAGGTACCCGAACATTGAAAAAGTGGCACTGGCTCTCCTGGTATCAGCCCGGAAGCTCAGACATTACTTCCAAGCACACTCAATCACCGTTTTCACTAATCACCCATTAAGGCAGGTTTTGCAGAAACCAGAGACATCGGGCAGGTTAATTAAATGGGCCATCGAGCTGGGGGAGTTCGATATCAAGTACCAGCCCCGGACAGCCATCAAGGGCCAGGCAGCGGCAGATTTTATTTCAGAATCAATCCCCTCCCATAACCCAAACCAGGAATCACCTGAACCACTAGCCGCAGATCCACCTCCGCCAAGCACTTGGCGATTATACGTTGATGGAGCATCCAACAAGAAAACCAGCGGAGCCAGCATCCTGCTAATTAGCCCGGACGATCAAGTCTATGAGTACGCCCTCAAATTTGCCTTCAAAGCATCCAACAATGCCGCAGAGTACGAGGCACTCATAGCAGGTCTGCAGATCGCCCGGGAACTAGGGAGATTTACCTCCTACATTTTTACCCAAATACCAAGGACAGAAAACGACAAGGCAGACGCCCTTGCTAAGCTTGCATCAACTTCTCCAAGTCCTACCTATGGGGCCGCTAAGGTCGAGATACTCGAGAAACCTAGCACTTCTAAAGCGGTGTCAGAAATATTTACGGTGGATCACACAGCTTCATGGATGGACCCAATCTTGAAGTACATGGTCGACGGCCTAGCACCAGACGATAAGGTAGAAGCCAGAAGACTACAGTTAAGGTCAGCTCGATACACGATCATGAATGGAAAATTGTACAGAAGAGGTCACTGCTTTCCCAACCTAAAGTGTGTAACACCGGAGGAAGGTCACAAAATAATGAAGGACATTCACGCCGGTGTATGCGGTAACCATGCCGGAGCCCGATCTCTTGCACACAAGACCCTAAGGGCAGGATATTTCTGGCCAACCATGTCGGCCCTGGCCCAAACAATATCCAGTTCTTACCACAAATGCCAAATGTATGCAAATATCCCAAGGGCACCGCCCATTGCCCTCTCCATCCTCCTTGCACCATGGCCGTTTTGTCAGTGGGGTTTGGACATGATTGGTAAACTTCCCACAGCAGTGGGACAGTTCAAATACGCCATTGTCGCGGTGGACTACCAAACAAAGTGGGTGGAGGCAGAGCCTCTCGTCCCCATCACCACGAAAAAGGTCAAAAGCTTCCTATGGAAGAACATCTACGGCAGGTTTGGAGTCCCGGACACCATAGTCACGGACAATGGTACCCAGTTTGACAATGATGAGTTGAGGCCTTACACAGAGAACCTGGGCACCAAGATCCTCTATGCTTCCCCGGCTCACCCCCAGACCAACGGTCAGGCCGAGGCTGTCAACAAGATAATCAAGAAAATACTGAAAAAGAAGCTTGACGAAGCCAAGGGTCTTTGGGCTGCTAAACTCCCGGAGGTGTTGTGGGCTATCAGGACCACGGCAACGGAGGCCACCGGAGAAACCCCTTTCTGCATGGCTTTCGGATCAGAAGCGGTACTCCCTATTGAAACACAAATCCAGAGTCCCCGGATCGAATACTTCGATGCGGGTACCAACTCAGAAGGCCTACACCTCGATGCCGATTTACTCGAGGAACGAAGGGATGTGGCACACATGCATAACTTGGCAAACAAGCGGAGGATAGCTCGTTATGACGATGCCAAGGTACAATCCCGAACACTGAAGTTGGGGGACTGGGTCATGAAGCAAGTCTACCCAGAACCCCGGGGACTGGATCCATCCTGGACAGGCCCTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

635

Amino Acids

70.78

Weight (kDa)

8.86

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	2 - 70	2.9e-10	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	3 - 99	2.3e-18	RNase H-like domain found in reverse transcriptase
rve	PF00665	394 - 487	2.3e-09	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	509, 1364
Acc36I	ACCTGC	4 cut(s)	223, 252, 572, 1332
Acc65I	GGTACC	3 cut(s)	123, 1379, 1697
AccB1I	GGYRCC	5 cut(s)	123, 1132, 1379, 1427, 1697
AccI	GTMKAC	2 cut(s)	822, 1860
AccII	CGCG	1 cut(s)	1247
AclWI	GGATC	7 cut(s)	407, 786, 1429, 1639, 1685, 1877, 1890
AcoI	YGGCCR	2 cut(s)	1055, 1169
AcsI	RAATTY	1 cut(s)	530
AcuI	CTGAAG	1 cut(s)	1850
AcyI	GRCGYC	1 cut(s)	666
AfiI	CCNNNNNNNGG	5 cut(s)	340, 385, 707, 956, 1879
AgsI	TTSAA	5 cut(s)	137, 541, 811, 1231, 1655
AhdI	GACNNNNNGTC	1 cut(s)	1470
AjnI	CCWGG	7 cut(s)	119, 156, 333, 384, 1071, 1422, 1889
AleI	CACNNNNGTG	2 cut(s)	987, 1217
AluBI	AGCT	9 cut(s)	42, 175, 286, 679, 788, 878, 1317, 1522, 1793
AluI	AGCT	9 cut(s)	42, 175, 286, 679, 788, 878, 1317, 1522, 1793
Alw21I	GWGCWC	1 cut(s)	44
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	7 cut(s)	407, 786, 1429, 1639, 1685, 1877, 1890
Ama87I	CYCGRG	4 cut(s)	597, 731, 1736, 1872
ApeKI	GCWGC	2 cut(s)	338, 1547
ApoI	RAATTY	1 cut(s)	530
ArsI	GACNNNNNNTTYG	2 cut(s)	1654, 1686
Asp718I	GGTACC	3 cut(s)	123, 1379, 1697
AspS9I	GGNCC	8 cut(s)	276, 331, 711, 799, 1069, 1075, 1581, 1898
AsuHPI	GGTGA	5 cut(s)	196, 212, 384, 1288, 1448
AvaI	CYCGRG	4 cut(s)	597, 731, 1736, 1872
AvaII	GGWCC	2 cut(s)	799, 1581
AxyI	CCTNAGG	1 cut(s)	1037
BaeGI	GKGCMC	2 cut(s)	1135, 1430
BaeI	ACNNNNGTAYC	2 cut(s)	1363, 1396
BalI	TGGCCA	1 cut(s)	1057
BamHI	GGATCC	1 cut(s)	1882
BanI	GGYRCC	5 cut(s)	123, 1132, 1379, 1427, 1697
BanII	GRGCYC	2 cut(s)	44, 1015
BarI	GAAGNNNNNNTAC	4 cut(s)	1319, 1351, 1844, 1876
BbsI	GAAGAC	1 cut(s)	865
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	2 cut(s)	350, 1534
BccI	CCATC	7 cut(s)	287, 332, 443, 790, 1160, 1301, 1894
BceAI	ACGGC	4 cut(s)	841, 1156, 1354, 1602
BcgI	CGANNNNNNTGC	2 cut(s)	1609, 1643
BciT130I	CCWGG	7 cut(s)	121, 158, 335, 386, 1073, 1424, 1891
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	5 cut(s)	404, 605, 741, 830, 1906
BfmI	CTRYAG	2 cut(s)	587, 863
BfuAI	ACCTGC	4 cut(s)	223, 252, 572, 1332
BisI	GCNGC	7 cut(s)	21, 339, 342, 408, 558, 714, 1548
BlpI	GCTNAGC	1 cut(s)	675
BlsI	GCNGC	7 cut(s)	22, 340, 343, 409, 559, 715, 1549
Bme18I	GGWCC	2 cut(s)	799, 1581
BmeRI	GACNNNNNGTC	1 cut(s)	1470
BmeT110I	CYCGRG	4 cut(s)	597, 731, 1736, 1872
BmgT120I	GGNCC	8 cut(s)	276, 331, 711, 799, 1069, 1075, 1581, 1898
BmrI	ACTGGG	3 cut(s)	74, 1378, 1852
BmsI	GCATC	8 cut(s)	32, 464, 492, 554, 692, 1681, 1714, 1795
BmuI	ACTGGG	3 cut(s)	74, 1378, 1852
BpiI	GAAGAC	1 cut(s)	865
BplI	GAGNNNNNCTC	2 cut(s)	1777, 1809
Bpu10I	CCTNAGC	1 cut(s)	717
Bpu1102I	GCTNAGC	1 cut(s)	675
BsaAI	YACGTR	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	666
BsaWI	WCCGGW	2 cut(s)	949, 1601
BsaXI	ACNNNNNCTCC	4 cut(s)	138, 168, 1553, 1583
Bsc4I	CCNNNNNNNGG	5 cut(s)	340, 385, 707, 956, 1879
Bse118I	RCCGGY	1 cut(s)	986
Bse1I	ACTGG	7 cut(s)	80, 112, 153, 1089, 1384, 1847, 1884
Bse21I	CCTNAGG	1 cut(s)	1037
Bse3DI	GCAATG	1 cut(s)	1140
BseBI	CCWGG	7 cut(s)	121, 158, 335, 386, 1073, 1424, 1891
BseGI	GGATG	7 cut(s)	455, 483, 545, 801, 1152, 1756, 1886
BseLI	CCNNNNNNNGG	5 cut(s)	340, 385, 707, 956, 1879
BseMI	GCAATG	1 cut(s)	1140
BseMII	CTCAG	3 cut(s)	57, 190, 1719
BseNI	ACTGG	7 cut(s)	80, 112, 153, 1089, 1384, 1847, 1884
BseSI	GKGCMC	2 cut(s)	1135, 1430
BseXI	GCAGC	2 cut(s)	350, 1534
BseYI	CCCAGC	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	1247
BshNI	GGYRCC	5 cut(s)	123, 1132, 1379, 1427, 1697
BsiHKAI	GWGCWC	1 cut(s)	44
BsiHKCI	CYCGRG	4 cut(s)	597, 731, 1736, 1872
BslFI	GGGAC	6 cut(s)	1236, 1274, 1337, 1656, 1853, 1890
BslI	CCNNNNNNNGG	5 cut(s)	340, 385, 707, 956, 1879
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	6 cut(s)	1236, 1274, 1337, 1656, 1853, 1890
BsoBI	CYCGRG	4 cut(s)	597, 731, 1736, 1872
Bsp1286I	GDGCHC	4 cut(s)	44, 1015, 1135, 1430
Bsp1407I	TGTACA	1 cut(s)	906
Bsp1720I	GCTNAGC	1 cut(s)	675
Bsp19I	CCATGG	1 cut(s)	1166
BspCNI	CTCAG	3 cut(s)	56, 189, 1718
BspFNI	CGCG	1 cut(s)	1247
BspHI	TCATGA	2 cut(s)	891, 1848
BspMAI	CTGCAG	1 cut(s)	591
BspMI	ACCTGC	4 cut(s)	223, 252, 572, 1332
BspPI	GGATC	7 cut(s)	407, 786, 1429, 1639, 1685, 1877, 1890
BspT107I	GGYRCC	5 cut(s)	123, 1132, 1379, 1427, 1697
BsrDI	GCAATG	1 cut(s)	1140
BsrFI	RCCGGY	1 cut(s)	986
BsrGI	TGTACA	1 cut(s)	906
BsrI	ACTGG	7 cut(s)	80, 112, 153, 1089, 1384, 1847, 1884
BssAI	RCCGGY	1 cut(s)	986
BssNI	GRCGYC	1 cut(s)	666
BssT1I	CCWWGG	5 cut(s)	641, 1127, 1166, 1533, 1809
Bst2UI	CCWGG	7 cut(s)	121, 158, 335, 386, 1073, 1424, 1891
Bst4CI	ACNGT	5 cut(s)	208, 775, 867, 1227, 1472
Bst6I	CTCTTC	1 cut(s)	907
BstACI	GRCGYC	1 cut(s)	666
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstAUI	TGTACA	1 cut(s)	906
BstBAI	YACGTR	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	481, 681
BstDEI	CTNAG	6 cut(s)	43, 176, 675, 717, 1037, 1705
BstDSI	CCRYGG	2 cut(s)	1166, 1584
BstEII	GGTNACC	1 cut(s)	998
BstF5I	GGATG	7 cut(s)	455, 483, 545, 801, 1152, 1756, 1886
BstFNI	CGCG	1 cut(s)	1247
BstMAI	GTCTC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	8 cut(s)	238, 480, 542, 578, 680, 1244, 1451, 1595
BstNI	CCWGG	7 cut(s)	121, 158, 335, 386, 1073, 1424, 1891
BstNSI	RCATGY	1 cut(s)	1765
BstPI	GGTNACC	1 cut(s)	998
BstSFI	CTRYAG	2 cut(s)	587, 863
BstSLI	GKGCMC	2 cut(s)	1135, 1430
BstSNI	TACGTA	1 cut(s)	10
BstUI	CGCG	1 cut(s)	1247
BstV1I	GCAGC	2 cut(s)	350, 1534
BstV2I	GAAGAC	1 cut(s)	865
BstX2I	RGATCY	3 cut(s)	412, 1434, 1882
BstXI	CCANNNNNNTGG	3 cut(s)	286, 432, 1219
BstYI	RGATCY	3 cut(s)	412, 1434, 1882
Bsu36I	CCTNAGG	1 cut(s)	1037
BtgI	CCRYGG	2 cut(s)	1166, 1584
BtsCI	GGATG	7 cut(s)	455, 483, 545, 801, 1152, 1756, 1886
BtsI	GCAGTG	2 cut(s)	919, 1224
BtsIMutI	CAGTG	7 cut(s)	87, 105, 146, 919, 1187, 1224, 1826
BveI	ACCTGC	4 cut(s)	223, 252, 572, 1332
Cac8I	GCNNGC	2 cut(s)	481, 681
CciI	TCATGA	2 cut(s)	891, 1848
Cfr10I	RCCGGY	1 cut(s)	986
Cfr13I	GGNCC	8 cut(s)	276, 331, 711, 799, 1069, 1075, 1581, 1898
Cfr9I	CCCGGG	2 cut(s)	597, 1872
CseI	GACGC	1 cut(s)	674
CspCI	CAANNNNNGTGG	4 cut(s)	1247, 1251, 1282, 1286
DdeI	CTNAG	6 cut(s)	43, 176, 675, 717, 1037, 1705
DrdI	GACNNNNNNGTC	2 cut(s)	509, 1364
DriI	GACNNNNNGTC	1 cut(s)	1470
DseDI	GACNNNNNNGTC	2 cut(s)	509, 1364
EaeI	YGGCCR	2 cut(s)	1055, 1169
Eam1104I	CTCTTC	1 cut(s)	907
Eam1105I	GACNNNNNGTC	1 cut(s)	1470
EarI	CTCTTC	1 cut(s)	907
EciI	GGCGGA	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	42
Eco105I	TACGTA	1 cut(s)	10
Eco130I	CCWWGG	5 cut(s)	641, 1127, 1166, 1533, 1809
Eco147I	AGGCCT	2 cut(s)	1408, 1713
Eco24I	GRGCYC	2 cut(s)	44, 1015
Eco32I	GATATC	1 cut(s)	301
Eco47I	GGWCC	2 cut(s)	799, 1581
Eco53kI	GAGCTC	1 cut(s)	42
Eco57I	CTGAAG	1 cut(s)	1850
Eco81I	CCTNAGG	1 cut(s)	1037
Eco88I	CYCGRG	4 cut(s)	597, 731, 1736, 1872
Eco91I	GGTNACC	1 cut(s)	998
EcoICRI	GAGCTC	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	1898
EcoO65I	GGTNACC	1 cut(s)	998
EcoRII	CCWGG	7 cut(s)	119, 156, 333, 384, 1071, 1422, 1889
EcoRV	GATATC	1 cut(s)	301
EcoT14I	CCWWGG	5 cut(s)	641, 1127, 1166, 1533, 1809
EcoT22I	ATGCAT	1 cut(s)	1767
EcoT38I	GRGCYC	2 cut(s)	44, 1015
ErhI	CCWWGG	5 cut(s)	641, 1127, 1166, 1533, 1809
FaqI	GGGAC	6 cut(s)	1236, 1274, 1337, 1656, 1853, 1890
FauI	CCCGC	1 cut(s)	1687
FblI	GTMKAC	2 cut(s)	822, 1860
Fnu4HI	GCNGC	7 cut(s)	21, 339, 342, 408, 558, 714, 1548
FokI	GGATG	7 cut(s)	442, 470, 532, 808, 1139, 1763, 1873
FriOI	GRGCYC	2 cut(s)	44, 1015
Fsp4HI	GCNGC	7 cut(s)	21, 339, 342, 408, 558, 714, 1548
FspBI	CTAG	5 cut(s)	404, 605, 741, 830, 1906
GluI	GCNGC	7 cut(s)	21, 339, 342, 408, 558, 714, 1548
GsaI	CCCAGC	1 cut(s)	290
HgaI	GACGC	1 cut(s)	674
Hin1I	GRCGYC	1 cut(s)	666
HincII	GTYRAC	3 cut(s)	30, 823, 1489
HindII	GTYRAC	3 cut(s)	30, 823, 1489
HindIII	AAGCTT	3 cut(s)	677, 1315, 1520
HinfI	GANTC	6 cut(s)	62, 116, 359, 389, 1350, 1669
HphI	GGTGA	5 cut(s)	196, 212, 384, 1288, 1448
Hpy166II	GTNNAC	6 cut(s)	30, 823, 1205, 1252, 1489, 1861
Hpy188I	TCNGA	7 cut(s)	67, 179, 358, 763, 1631, 1636, 1708
Hpy8I	GTNNAC	6 cut(s)	30, 823, 1205, 1252, 1489, 1861
Hpy99I	CGWCG	1 cut(s)	827
HpyAV	CCTTC	6 cut(s)	52, 547, 950, 967, 1703, 1740
HpyCH4III	ACNGT	5 cut(s)	208, 775, 867, 1227, 1472
HpyCH4IV	ACGT	2 cut(s)	9, 444
HpyCH4V	TGCA	9 cut(s)	113, 241, 589, 683, 1025, 1118, 1163, 1620, 1765
HpyF10VI	GCNNNNNNNGC	8 cut(s)	238, 480, 542, 578, 680, 1244, 1451, 1595
HpyF3I	CTNAG	6 cut(s)	43, 176, 675, 717, 1037, 1705
HpySE526I	ACGT	2 cut(s)	9, 444
Hsp92I	GRCGYC	1 cut(s)	666
KpnI	GGTACC	3 cut(s)	127, 1383, 1701
LmnI	GCTCC	3 cut(s)	452, 476, 1010
Lsp1109I	GCAGC	2 cut(s)	350, 1534
LweI	GCATC	8 cut(s)	32, 464, 492, 554, 692, 1681, 1714, 1795
MaeI	CTAG	5 cut(s)	404, 605, 741, 830, 1906
MaeII	ACGT	2 cut(s)	9, 444
MaeIII	GTNAC	6 cut(s)	101, 917, 943, 959, 998, 1366
MboII	GAAGA	3 cut(s)	870, 924, 1339
MflI	RGATCY	3 cut(s)	412, 1434, 1882
MhlI	GDGCHC	4 cut(s)	44, 1015, 1135, 1430
MlsI	TGGCCA	1 cut(s)	1057
MluCI	AATT	4 cut(s)	267, 492, 530, 902
MluNI	TGGCCA	1 cut(s)	1057
MlyI	GAGTC	3 cut(s)	56, 1359, 1678
MmeI	TCCRAC	2 cut(s)	483, 573
Mox20I	TGGCCA	1 cut(s)	1057
Mph1103I	ATGCAT	1 cut(s)	1767
MscI	TGGCCA	1 cut(s)	1057
MseI	TTAA	4 cut(s)	227, 266, 270, 869
MslI	CAYNNNNRTG	4 cut(s)	890, 987, 1217, 1722
Msp20I	TGGCCA	1 cut(s)	1057
MspA1I	CMGCKG	2 cut(s)	341, 474
MvaI	CCWGG	7 cut(s)	121, 158, 335, 386, 1073, 1424, 1891
MvnI	CGCG	1 cut(s)	1247
MwoI	GCNNNNNNNGC	8 cut(s)	238, 480, 542, 578, 680, 1244, 1451, 1595
NcoI	CCATGG	1 cut(s)	1166
NmeAIII	GCCGAG	1 cut(s)	1504
NmuCI	GTSAC	3 cut(s)	917, 959, 1366
NsiI	ATGCAT	1 cut(s)	1767
NspI	RCATGY	1 cut(s)	1765
OliI	CACNNNNGTG	2 cut(s)	987, 1217
PacI	TTAATTAA	1 cut(s)	270
PaeR7I	CTCGAG	2 cut(s)	731, 1736
PagI	TCATGA	2 cut(s)	891, 1848
PceI	AGGCCT	2 cut(s)	1408, 1713
PcsI	WCGNNNNNNNCGW	3 cut(s)	729, 1476, 1686
PfeI	GAWTC	3 cut(s)	116, 359, 389
PflFI	GACNNNGTC	1 cut(s)	1844
PfoI	TCCNGGA	3 cut(s)	1353, 1557, 1889
PkrI	GCNGC	7 cut(s)	22, 340, 343, 409, 559, 715, 1549
PleI	GAGTC	3 cut(s)	56, 1358, 1677
PpsI	GAGTC	3 cut(s)	56, 1358, 1677
Ppu21I	YACGTR	1 cut(s)	10
Psp124BI	GAGCTC	1 cut(s)	44
Psp6I	CCWGG	7 cut(s)	119, 156, 333, 384, 1071, 1422, 1889
PspEI	GGTNACC	1 cut(s)	998
PspFI	CCCAGC	1 cut(s)	286
PspGI	CCWGG	7 cut(s)	119, 156, 333, 384, 1071, 1422, 1889
PspPI	GGNCC	8 cut(s)	276, 331, 711, 799, 1069, 1075, 1581, 1898
PspXI	VCTCGAGB	1 cut(s)	1736
PstI	CTGCAG	1 cut(s)	591
PsuI	RGATCY	3 cut(s)	412, 1434, 1882
PsyI	GACNNNGTC	1 cut(s)	1844
RseI	CAYNNNNRTG	4 cut(s)	890, 987, 1217, 1722
SacI	GAGCTC	1 cut(s)	44
SalI	GTCGAC	1 cut(s)	821
SaqAI	TTAA	4 cut(s)	227, 266, 270, 869
SatI	GCNGC	7 cut(s)	21, 339, 342, 408, 558, 714, 1548
Sau96I	GGNCC	8 cut(s)	276, 331, 711, 799, 1069, 1075, 1581, 1898
SchI	GAGTC	3 cut(s)	56, 1359, 1678
SduI	GDGCHC	4 cut(s)	44, 1015, 1135, 1430
SfaNI	GCATC	8 cut(s)	32, 464, 492, 554, 692, 1681, 1714, 1795
SfcI	CTRYAG	2 cut(s)	587, 863
Sfr274I	CTCGAG	2 cut(s)	731, 1736
SgrAI	CRCCGGYG	1 cut(s)	986
SinI	GGWCC	2 cut(s)	799, 1581
SlaI	CTCGAG	2 cut(s)	731, 1736
SmaI	CCCGGG	2 cut(s)	599, 1874
SmiMI	CAYNNNNRTG	4 cut(s)	890, 987, 1217, 1722
SmlI	CTYRAG	2 cut(s)	731, 1736
SmoI	CTYRAG	2 cut(s)	731, 1736
SnaBI	TACGTA	1 cut(s)	10
Sse9I	AATT	4 cut(s)	267, 492, 530, 902
SseBI	AGGCCT	2 cut(s)	1408, 1713
SspI	AATATT	1 cut(s)	768
SspMI	CTAG	5 cut(s)	404, 605, 741, 830, 1906
SstI	GAGCTC	1 cut(s)	44
StuI	AGGCCT	2 cut(s)	1408, 1713
StyI	CCWWGG	5 cut(s)	641, 1127, 1166, 1533, 1809
TaaI	ACNGT	5 cut(s)	208, 775, 867, 1227, 1472
TaiI	ACGT	2 cut(s)	12, 447
TasI	AATT	4 cut(s)	267, 492, 530, 902
TatI	WGTACW	2 cut(s)	813, 906
TauI	GCSGC	5 cut(s)	23, 344, 410, 560, 716
TfiI	GAWTC	3 cut(s)	116, 359, 389
Tru1I	TTAA	4 cut(s)	227, 266, 270, 869
Tru9I	TTAA	4 cut(s)	227, 266, 270, 869
TscAI	CASTG	7 cut(s)	87, 112, 153, 926, 1187, 1224, 1833
TseFI	GTSAC	3 cut(s)	917, 959, 1366
TseI	GCWGC	2 cut(s)	338, 1547
Tsp45I	GTSAC	3 cut(s)	917, 959, 1366
TspDTI	ATGAA	4 cut(s)	780, 908, 986, 1865
TspGWI	ACGGA	2 cut(s)	1385, 1607
TspMI	CCCGGG	2 cut(s)	597, 1872
TspRI	CASTG	7 cut(s)	87, 112, 153, 926, 1187, 1224, 1833
Tth111I	GACNNNGTC	1 cut(s)	1844
VpaK11BI	GGWCC	2 cut(s)	799, 1581
XapI	RAATTY	1 cut(s)	530
XceI	RCATGY	1 cut(s)	1765
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1069, 1246
XhoI	CTCGAG	2 cut(s)	731, 1736
XmaI	CCCGGG	2 cut(s)	597, 1872
XmiI	GTMKAC	2 cut(s)	822, 1860
XspI	CTAG	5 cut(s)	404, 605, 741, 830, 1906
Zsp2I	ATGCAT	1 cut(s)	1767

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.