Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

31915988 .. 31918465

Gene Structure 2478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G014300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

ATGCGGCTTAACCCACAAAAGTGCATCTTTGGGGTCGAGGTCGGAAAATTCCTCGGGTACATCATCAGCCACAGGGGAATCGAAGCCAATCCAGAGAAAGTGCAGGCTATAATTGACATGGTATCCCCAACCTACCGGAACGAGGTCCAGTCTCTTGTAGGCAAGGTGGCCGCCCTGTCAAGATTCATCTCCAGGCTGACGGACAAGTGTACCCCTTTCTTCAAATTGCTAAAAACCCAACACGTCGAGGTAATAGCCTGGACAGCGGAGCACGAGGCTGCTTTCCTTGGCTTGAAGTCGTACCTGTCACAGGTACCCCTACTCTACAAACCTGTTCCCGGAGAAATGCTCTACGTATATCTGGCAGCATCGGCAACTGCTGTGAGCTCAGTCCTGATTAGGAAGGACTCCGATTGTGAGTACCCGGTGTACTACGCAGGGAAAGGTTACACTGGTGCAGAGTCCAGGTACCCGGACATTGAAAGAGTAGCACTGGCCCTCCAAGTATCGGCCTGGAAGCTCAGACATTACTTCCAGGCACACTCTATCACCGTTTTCACTAATCACCCATTGAGGCAGGTTTTGCAGAAACCAGAGACATCGGGCAGATTAATTAAATGGGCCATCGAGCTGGGGGAATTCGATATCAAGTACCTGCCCCGTACAGCCATCAAGGGCCAGGCAGCAGCCGATTTTATTTCCGAATTAATCCCTTCCCATGACCCAAGCAGGGAATCACCTGAACCACTAGCTTCGGATCCACCTCCGCCAAGCACTTGGCGATTATACGTGGATGGGTCATCCAACAAGAGAACTAGCGGAGCCGGCATCTTGCTAATTAGCCCGGACGAGCAACACCTCCATATCTTCAGTGATTCCCAGTTGGTCGTAAACCAGGTCAGCGGTAACTTCGAGGCAAAGGAACCCCACATGTCCTCCTACCAGGCCTTGGCCCGGGCTTTAGTCCAGAGGTTCACCTCCTACATTTTTACCCAAATACCGAGGGCAGAAAACGACAAGGCAGACGCTCTTGCGAAACTCGCATCAACTTCTCCAAACCCTACCTATGGGACCACTAAATTCGAAATACTCGAGGGACCTAGCACTTCCAAAACGGTGTCAGAAATATTTTCGGTGGACCACAAAGCTTCATGGATGGATCCAATTTTGAAATACATGGAAGGTCACAAGGTAATGACGGACATTCACGCTGGTGTATGTGGTAACCATGCCGTCACCCGATCCTTTGCACACAAGACCCTAAGGGCAGGATATTTCTGGCCAACCATGTCGGCCCTGTGGGGTTTGGACTTGATTGGTAAACTTCCCACAGCAGTGGGACAGTTCAAGTACGCCATTATTACTGTAGACTACCAAACAAAGTGGGTAGAGGCAGAACCTCTCGTCGCCATCACCACGGAGAAAGTCAAGAACTTCCTCTGGAAGAACATATACTGCAGGTTCGGAGTCCCGGATACCATAGTCACGGACAATGGTACACAGTTTGACAATGATGAGTTGAGAGCTTACACACAGAACCTCGGCACTAAGATCCTCTATGCTTCCCCGGCTCACCCCCAGACAAACGGTCAGGTTGAAGCTATCAACAAGATAATCAAGAAGATACTGAAAAAGAAGCTCGACGAAGCCAAGGGCCTCTGGGCCGCTAAACTCCCGGAAGTGCTATGGGCTATCAGGATAACGGCAACAGAGACCACGGGCGAGACCCCTTTCTGCATGGCTTTTGGATCAGAAGCAGTACTCCCTATTGAAACACAAGTTCAGAGTCCCCGGATCGAATACTTCGATGCGGGTACCAACTCAGATGGCCTACACCTCGATGCTGATCTACTTGAGGAGCGAAGAGAAGTCGCACATATGCATAACTTAGCAAACAAGCGGAGGATAGCTCGTTACTACGATGCCAAGGTACAGTCCCGAACATTAAAATTGGGGGACTGGGTCATGAAGCAAGTCTATCCAGAACCCCGGGGATTGGATCCATCCTGGACAGGACCTTACGAGATCATTGAAGAGGTAGGTCCCGCAACCTTTTTCATCCGGGATATGAACGGACTCGTTTCCAGGCATCCATGGAATACCCAGCGCCTGCGGTACTATTACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

709

Amino Acids

79.83

Weight (kDa)

8.53

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	87 - 185	8.3e-18	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	116 - 214	1.4e-16	RNase H-like domain found in reverse transcriptase
RVT_3	PF13456	285 - 348	1.9e-08	Reverse transcriptase-like
rve	PF00665	433 - 526	1.7e-10	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	568, 663, 1449
Acc65I	GGTACC	3 cut(s)	313, 468, 1814
AccB1I	GGYRCC	3 cut(s)	313, 468, 1814
AccB7I	CCANNNNNTGG	1 cut(s)	949
AccI	GTMKAC	1 cut(s)	1368
AcoI	YGGCCR	2 cut(s)	168, 1280
AcsI	RAATTY	3 cut(s)	47, 638, 1079
AcuI	CTGAAG	1 cut(s)	853
AfiI	CCNNNNNNNGG	9 cut(s)	142, 310, 338, 508, 730, 949, 954, 1067, 1996
AflIII	ACRYGT	2 cut(s)	241, 930
AgsI	TTSAA	8 cut(s)	223, 295, 482, 1171, 1348, 1598, 1772, 2033
AhdI	GACNNNNNGTC	1 cut(s)	1587
AjiI	CACGTC	1 cut(s)	244
AleI	CACNNNNGTG	3 cut(s)	19, 1212, 1334
AluBI	AGCT	9 cut(s)	387, 520, 631, 752, 1148, 1526, 1601, 1639, 1910
AluI	AGCT	9 cut(s)	387, 520, 631, 752, 1148, 1526, 1601, 1639, 1910
Alw21I	GWGCWC	2 cut(s)	273, 389
Alw26I	GTCTC	4 cut(s)	156, 590, 1706, 1718
AlwNI	CAGNNNCTG	1 cut(s)	2110
Ama87I	CYCGRG	4 cut(s)	53, 954, 1091, 1989
ApeKI	GCWGC	4 cut(s)	278, 365, 683, 686
ApoI	RAATTY	3 cut(s)	47, 638, 1079
AseI	ATTAAT	2 cut(s)	611, 707
Asp718I	GGTACC	3 cut(s)	313, 468, 1814
AspLEI	GCGC	1 cut(s)	2109
AsuHPI	GGTGA	7 cut(s)	541, 557, 729, 967, 1228, 1405, 1565
AsuII	TTCGAA	1 cut(s)	1083
AvaI	CYCGRG	4 cut(s)	53, 954, 1091, 1989
AvaII	GGWCC	6 cut(s)	145, 1071, 1097, 1138, 2015, 2042
AxyI	CCTNAGG	1 cut(s)	1262
BaeI	ACNNNNGTAYC	4 cut(s)	193, 226, 1467, 1500
BalI	TGGCCA	1 cut(s)	1282
BamHI	GGATCC	3 cut(s)	757, 1159, 1999
BanI	GGYRCC	3 cut(s)	313, 468, 1814
BanII	GRGCYC	1 cut(s)	389
BarI	GAAGNNNNNNTAC	2 cut(s)	1436, 1468
BauI	CACGAG	1 cut(s)	272
Bbv12I	GWGCWC	2 cut(s)	273, 389
BbvI	GCAGC	4 cut(s)	265, 377, 695, 698
BccI	CCATC	7 cut(s)	632, 677, 788, 1150, 1418, 1820, 2011
BceAI	ACGGC	2 cut(s)	1217, 1719
BciVI	GTATCC	2 cut(s)	133, 1468
BcoDI	GTCTC	4 cut(s)	156, 590, 1706, 1718
BfaI	CTAG	3 cut(s)	749, 816, 1101
BfmI	CTRYAG	2 cut(s)	1365, 1456
BfoI	RGCGCY	1 cut(s)	2110
BfuAI	ACCTGC	3 cut(s)	568, 663, 1449
BfuI	GTATCC	2 cut(s)	133, 1468
BisI	GCNGC	7 cut(s)	5, 171, 279, 366, 684, 687, 1665
BlsI	GCNGC	7 cut(s)	6, 172, 280, 367, 685, 688, 1666
BmcAI	AGTACT	1 cut(s)	1761
Bme18I	GGWCC	6 cut(s)	145, 1071, 1097, 1138, 2015, 2042
BmeRI	GACNNNNNGTC	1 cut(s)	1587
BmeT110I	CYCGRG	4 cut(s)	53, 954, 1091, 1989
BmgBI	CACGTC	1 cut(s)	244
BmrI	ACTGGG	2 cut(s)	874, 1969
BmsI	GCATC	8 cut(s)	33, 377, 837, 1052, 1798, 1831, 1912, 2098
BmuI	ACTGGG	2 cut(s)	874, 1969
BplI	GAGNNNNNCTC	4 cut(s)	333, 365, 1894, 1926
BpmI	CTGGAG	1 cut(s)	175
Bpu14I	TTCGAA	1 cut(s)	1083
BpuEI	CTTGAG	1 cut(s)	1874
BsaAI	YACGTR	2 cut(s)	355, 790
BsaBI	GATNNNNATC	1 cut(s)	1845
BsaI	GGTCTC	2 cut(s)	1706, 1718
BsaWI	WCCGGW	1 cut(s)	135
BsaXI	ACNNNNNCTCC	4 cut(s)	483, 513, 920, 950
Bsc4I	CCNNNNNNNGG	9 cut(s)	142, 310, 338, 508, 730, 949, 954, 1067, 1996
Bse118I	RCCGGY	1 cut(s)	824
Bse1I	ACTGG	5 cut(s)	148, 457, 498, 880, 1964
Bse21I	CCTNAGG	1 cut(s)	1262
Bse8I	GATNNNNATC	1 cut(s)	1845
BseGI	GGATG	6 cut(s)	799, 800, 1161, 2003, 2058, 2089
BseJI	GATNNNNATC	1 cut(s)	1845
BseLI	CCNNNNNNNGG	9 cut(s)	142, 310, 338, 508, 730, 949, 954, 1067, 1996
BseMII	CTCAG	3 cut(s)	402, 535, 1836
BseNI	ACTGG	5 cut(s)	148, 457, 498, 880, 1964
BseRI	GAGGAG	1 cut(s)	1871
BseXI	GCAGC	4 cut(s)	265, 377, 695, 698
BseYI	CCCAGC	2 cut(s)	631, 2103
BsgI	GTGCAG	2 cut(s)	122, 477
BshNI	GGYRCC	3 cut(s)	313, 468, 1814
BsiHKAI	GWGCWC	2 cut(s)	273, 389
BsiHKCI	CYCGRG	4 cut(s)	53, 954, 1091, 1989
BslFI	GGGAC	8 cut(s)	1084, 1110, 1353, 1454, 1773, 1921, 1970, 2028
BslI	CCNNNNNNNGG	9 cut(s)	142, 310, 338, 508, 730, 949, 954, 1067, 1996
BsmAI	GTCTC	4 cut(s)	156, 590, 1706, 1718
BsmFI	GGGAC	8 cut(s)	1084, 1110, 1353, 1454, 1773, 1921, 1970, 2028
Bso31I	GGTCTC	2 cut(s)	1706, 1718
BsoBI	CYCGRG	4 cut(s)	53, 954, 1091, 1989
Bsp119I	TTCGAA	1 cut(s)	1083
Bsp1286I	GDGCHC	2 cut(s)	273, 389
Bsp143I	GATC	9 cut(s)	757, 1159, 1241, 1551, 1748, 1794, 1846, 1999, 2025
Bsp19I	CCATGG	1 cut(s)	2093
BspCNI	CTCAG	3 cut(s)	401, 534, 1835
BspHI	TCATGA	1 cut(s)	1965
BspMAI	CTGCAG	1 cut(s)	1460
BspMI	ACCTGC	3 cut(s)	568, 663, 1449
BspT104I	TTCGAA	1 cut(s)	1083
BspT107I	GGYRCC	3 cut(s)	313, 468, 1814
BspTNI	GGTCTC	2 cut(s)	1706, 1718
BsrFI	RCCGGY	1 cut(s)	824
BsrI	ACTGG	5 cut(s)	148, 457, 498, 880, 1964
BssAI	RCCGGY	1 cut(s)	824
BssMI	GATC	9 cut(s)	757, 1159, 1241, 1551, 1748, 1794, 1846, 1999, 2025
BssSI	CACGAG	1 cut(s)	272
BssT1I	CCWWGG	5 cut(s)	286, 948, 1650, 1926, 2093
Bst2BI	CACGAG	1 cut(s)	272
Bst4CI	ACNGT	7 cut(s)	553, 1117, 1344, 1366, 1503, 1589, 1935
Bst6I	CTCTTC	2 cut(s)	1858, 2028
BstAPI	GCANNNNNTGC	1 cut(s)	583
BstBAI	YACGTR	2 cut(s)	355, 790
BstBI	TTCGAA	1 cut(s)	1083
BstC8I	GCNNGC	3 cut(s)	105, 826, 2111
BstDEI	CTNAG	6 cut(s)	388, 521, 1262, 1548, 1822, 1888
BstDSI	CCRYGG	3 cut(s)	1416, 1716, 2093
BstEII	GGTNACC	1 cut(s)	1223
BstENI	CCTNNNNNAGG	1 cut(s)	308
BstF5I	GGATG	6 cut(s)	799, 800, 1161, 2003, 2058, 2089
BstH2I	RGCGCY	1 cut(s)	2110
BstHHI	GCGC	1 cut(s)	2109
BstKTI	GATC	9 cut(s)	760, 1162, 1244, 1554, 1751, 1797, 1849, 2002, 2028
BstMAI	GTCTC	4 cut(s)	156, 590, 1706, 1718
BstMBI	GATC	9 cut(s)	757, 1159, 1241, 1551, 1748, 1794, 1846, 1999, 2025
BstMWI	GCNNNNNNNGC	6 cut(s)	263, 371, 583, 825, 1040, 1568
BstNSI	RCATGY	1 cut(s)	934
BstPI	GGTNACC	1 cut(s)	1223
BstSFI	CTRYAG	2 cut(s)	1365, 1456
BstSNI	TACGTA	1 cut(s)	355
BstV1I	GCAGC	4 cut(s)	265, 377, 695, 698
BstX2I	RGATCY	4 cut(s)	757, 1159, 1551, 1999
BstXI	CCANNNNNNTGG	3 cut(s)	631, 777, 1336
BstYI	RGATCY	4 cut(s)	757, 1159, 1551, 1999
Bsu36I	CCTNAGG	1 cut(s)	1262
BsuI	GTATCC	2 cut(s)	133, 1468
BtgI	CCRYGG	3 cut(s)	1416, 1716, 2093
BtrI	CACGTC	1 cut(s)	244
BtsCI	GGATG	6 cut(s)	799, 800, 1161, 2003, 2058, 2089
BtsI	GCAGTG	1 cut(s)	1341
BtsIMutI	CAGTG	4 cut(s)	450, 491, 877, 1341
BveI	ACCTGC	3 cut(s)	568, 663, 1449
Cac8I	GCNNGC	3 cut(s)	105, 826, 2111
CaiI	CAGNNNCTG	1 cut(s)	2110
CciI	TCATGA	1 cut(s)	1965
CfoI	GCGC	1 cut(s)	2109
Cfr10I	RCCGGY	1 cut(s)	824
Cfr9I	CCCGGG	2 cut(s)	954, 1989
CseI	GACGC	1 cut(s)	1034
CsiI	ACCWGGT	1 cut(s)	894
CspCI	CAANNNNNGTGG	2 cut(s)	1364, 1399
DdeI	CTNAG	6 cut(s)	388, 521, 1262, 1548, 1822, 1888
DpnI	GATC	9 cut(s)	759, 1161, 1243, 1553, 1750, 1796, 1848, 2001, 2027
DpnII	GATC	9 cut(s)	757, 1159, 1241, 1551, 1748, 1794, 1846, 1999, 2025
DriI	GACNNNNNGTC	1 cut(s)	1587
EaeI	YGGCCR	2 cut(s)	168, 1280
Eam1104I	CTCTTC	2 cut(s)	1858, 2028
Eam1105I	GACNNNNNGTC	1 cut(s)	1587
EarI	CTCTTC	2 cut(s)	1858, 2028
EciI	GGCGGA	1 cut(s)	756
Ecl136II	GAGCTC	1 cut(s)	387
Eco105I	TACGTA	1 cut(s)	355
Eco130I	CCWWGG	5 cut(s)	286, 948, 1650, 1926, 2093
Eco147I	AGGCCT	1 cut(s)	947
Eco24I	GRGCYC	1 cut(s)	389
Eco31I	GGTCTC	2 cut(s)	1706, 1718
Eco32I	GATATC	1 cut(s)	646
Eco47I	GGWCC	6 cut(s)	145, 1071, 1097, 1138, 2015, 2042
Eco53kI	GAGCTC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	853
Eco81I	CCTNAGG	1 cut(s)	1262
Eco88I	CYCGRG	4 cut(s)	53, 954, 1091, 1989
Eco91I	GGTNACC	1 cut(s)	1223
EcoICRI	GAGCTC	1 cut(s)	387
EcoNI	CCTNNNNNAGG	1 cut(s)	308
EcoO109I	RGGNCCY	4 cut(s)	1097, 1654, 2015, 2042
EcoO65I	GGTNACC	1 cut(s)	1223
EcoRI	GAATTC	1 cut(s)	638
EcoRV	GATATC	1 cut(s)	646
EcoT14I	CCWWGG	5 cut(s)	286, 948, 1650, 1926, 2093
EcoT22I	ATGCAT	1 cut(s)	1884
EcoT38I	GRGCYC	1 cut(s)	389
ErhI	CCWWGG	5 cut(s)	286, 948, 1650, 1926, 2093
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	8 cut(s)	1084, 1110, 1353, 1454, 1773, 1921, 1970, 2028
FauI	CCCGC	2 cut(s)	1804, 2053
FauNDI	CATATG	1 cut(s)	1878
FblI	GTMKAC	1 cut(s)	1368
Fnu4HI	GCNGC	7 cut(s)	5, 171, 279, 366, 684, 687, 1665
FokI	GGATG	6 cut(s)	787, 806, 1168, 1990, 2045, 2076
FriOI	GRGCYC	1 cut(s)	389
Fsp4HI	GCNGC	7 cut(s)	5, 171, 279, 366, 684, 687, 1665
FspBI	CTAG	3 cut(s)	749, 816, 1101
GlaI	GCGC	1 cut(s)	2108
GluI	GCNGC	7 cut(s)	5, 171, 279, 366, 684, 687, 1665
GsaI	CCCAGC	2 cut(s)	635, 2107
GsuI	CTGGAG	1 cut(s)	175
HaeII	RGCGCY	1 cut(s)	2110
HgaI	GACGC	1 cut(s)	1034
HhaI	GCGC	1 cut(s)	2109
Hin6I	GCGC	1 cut(s)	2107
HinP1I	GCGC	1 cut(s)	2107
HindIII	AAGCTT	1 cut(s)	1146
HinfI	GANTC	9 cut(s)	78, 183, 407, 461, 734, 875, 1467, 1786, 2076
HphI	GGTGA	7 cut(s)	541, 557, 729, 967, 1228, 1405, 1565
Hpy166II	GTNNAC	8 cut(s)	210, 430, 892, 975, 1138, 1322, 1369, 1499
Hpy8I	GTNNAC	8 cut(s)	210, 430, 892, 975, 1138, 1322, 1369, 1499
Hpy99I	CGWCG	3 cut(s)	248, 1409, 1646
HpyAV	CCTTC	3 cut(s)	397, 723, 1175
HpyCH4III	ACNGT	7 cut(s)	553, 1117, 1344, 1366, 1503, 1589, 1935
HpyCH4IV	ACGT	3 cut(s)	243, 354, 789
HpyCH4V	TGCA	8 cut(s)	24, 103, 458, 586, 1250, 1458, 1737, 1882
HpyF10VI	GCNNNNNNNGC	6 cut(s)	263, 371, 583, 825, 1040, 1568
HpyF3I	CTNAG	6 cut(s)	388, 521, 1262, 1548, 1822, 1888
HpySE526I	ACGT	3 cut(s)	243, 354, 789
HspAI	GCGC	1 cut(s)	2107
KpnI	GGTACC	3 cut(s)	317, 472, 1818
KroI	GCCGGC	1 cut(s)	824
KroNI	GCCGGC	1 cut(s)	826
Kzo9I	GATC	9 cut(s)	757, 1159, 1241, 1551, 1748, 1794, 1846, 1999, 2025
LmnI	GCTCC	3 cut(s)	268, 821, 1858
Lsp1109I	GCAGC	4 cut(s)	265, 377, 695, 698
LweI	GCATC	8 cut(s)	33, 377, 837, 1052, 1798, 1831, 1912, 2098
MabI	ACCWGGT	1 cut(s)	894
MaeI	CTAG	3 cut(s)	749, 816, 1101
MaeII	ACGT	3 cut(s)	243, 354, 789
MaeIII	GTNAC	8 cut(s)	306, 446, 905, 1184, 1223, 1234, 1483, 1913
MalI	GATC	9 cut(s)	759, 1161, 1243, 1553, 1750, 1796, 1848, 2001, 2027
MboI	GATC	9 cut(s)	757, 1159, 1241, 1551, 1748, 1794, 1846, 1999, 2025
MboII	GAAGA	6 cut(s)	211, 859, 1456, 1633, 1875, 2045
MflI	RGATCY	4 cut(s)	757, 1159, 1551, 1999
MhlI	GDGCHC	2 cut(s)	273, 389
MlsI	TGGCCA	1 cut(s)	1282
MluNI	TGGCCA	1 cut(s)	1282
MlyI	GAGTC	5 cut(s)	401, 470, 1476, 1795, 2070
MmeI	TCCRAC	2 cut(s)	22, 828
Mox20I	TGGCCA	1 cut(s)	1282
Mph1103I	ATGCAT	1 cut(s)	1884
MroNI	GCCGGC	1 cut(s)	824
MscI	TGGCCA	1 cut(s)	1282
MseI	TTAA	5 cut(s)	9, 611, 615, 707, 1946
MslI	CAYNNNNRTG	4 cut(s)	19, 1212, 1334, 1839
Msp20I	TGGCCA	1 cut(s)	1282
MspA1I	CMGCKG	2 cut(s)	266, 903
MwoI	GCNNNNNNNGC	6 cut(s)	263, 371, 583, 825, 1040, 1568
NaeI	GCCGGC	1 cut(s)	826
NcoI	CCATGG	1 cut(s)	2093
NdeI	CATATG	1 cut(s)	1878
NdeII	GATC	9 cut(s)	757, 1159, 1241, 1551, 1748, 1794, 1846, 1999, 2025
NgoMIV	GCCGGC	1 cut(s)	824
NmeAIII	GCCGAG	1 cut(s)	1521
NmuCI	GTSAC	4 cut(s)	306, 1184, 1234, 1483
NsiI	ATGCAT	1 cut(s)	1884
NspI	RCATGY	1 cut(s)	934
NspV	TTCGAA	1 cut(s)	1083
OliI	CACNNNNGTG	3 cut(s)	19, 1212, 1334
PacI	TTAATTAA	1 cut(s)	615
PaeR7I	CTCGAG	1 cut(s)	1091
PagI	TCATGA	1 cut(s)	1965
PceI	AGGCCT	1 cut(s)	947
PciI	ACATGT	1 cut(s)	930
PcsI	WCGNNNNNNNCGW	2 cut(s)	1089, 1803
PdiI	GCCGGC	1 cut(s)	826
PfeI	GAWTC	4 cut(s)	78, 183, 734, 875
PflFI	GACNNNGTC	1 cut(s)	1961
PflMI	CCANNNNNTGG	1 cut(s)	949
PfoI	TCCNGGA	5 cut(s)	337, 1470, 1674, 2006, 2061
PkrI	GCNGC	7 cut(s)	6, 172, 280, 367, 685, 688, 1666
PleI	GAGTC	5 cut(s)	401, 469, 1475, 1794, 2070
PpsI	GAGTC	5 cut(s)	401, 469, 1475, 1794, 2070
Ppu21I	YACGTR	2 cut(s)	355, 790
PpuMI	RGGWCCY	3 cut(s)	1097, 2015, 2042
PscI	ACATGT	1 cut(s)	930
PshBI	ATTAAT	2 cut(s)	611, 707
Psp124BI	GAGCTC	1 cut(s)	389
Psp5II	RGGWCCY	3 cut(s)	1097, 2015, 2042
PspEI	GGTNACC	1 cut(s)	1223
PspFI	CCCAGC	2 cut(s)	631, 2103
PspPPI	RGGWCCY	3 cut(s)	1097, 2015, 2042
PspXI	VCTCGAGB	1 cut(s)	1091
PstI	CTGCAG	1 cut(s)	1460
PstNI	CAGNNNCTG	1 cut(s)	2110
PsuI	RGATCY	4 cut(s)	757, 1159, 1551, 1999
PsyI	GACNNNGTC	1 cut(s)	1961
RseI	CAYNNNNRTG	4 cut(s)	19, 1212, 1334, 1839
SacI	GAGCTC	1 cut(s)	389
SaqAI	TTAA	5 cut(s)	9, 611, 615, 707, 1946
SatI	GCNGC	7 cut(s)	5, 171, 279, 366, 684, 687, 1665
Sau3AI	GATC	9 cut(s)	757, 1159, 1241, 1551, 1748, 1794, 1846, 1999, 2025
ScaI	AGTACT	1 cut(s)	1761
SchI	GAGTC	5 cut(s)	401, 470, 1476, 1795, 2070
SduI	GDGCHC	2 cut(s)	273, 389
SexAI	ACCWGGT	1 cut(s)	894
SfaNI	GCATC	8 cut(s)	33, 377, 837, 1052, 1798, 1831, 1912, 2098
SfcI	CTRYAG	2 cut(s)	1365, 1456
Sfr274I	CTCGAG	1 cut(s)	1091
SfuI	TTCGAA	1 cut(s)	1083
SinI	GGWCC	6 cut(s)	145, 1071, 1097, 1138, 2015, 2042
SlaI	CTCGAG	1 cut(s)	1091
SmaI	CCCGGG	2 cut(s)	956, 1991
SmiMI	CAYNNNNRTG	4 cut(s)	19, 1212, 1334, 1839
SmlI	CTYRAG	2 cut(s)	1091, 1853
SmoI	CTYRAG	2 cut(s)	1091, 1853
SnaBI	TACGTA	1 cut(s)	355
SrfI	GCCCGGGC	1 cut(s)	956
SseBI	AGGCCT	1 cut(s)	947
SspI	AATATT	1 cut(s)	1128
SspMI	CTAG	3 cut(s)	749, 816, 1101
SstI	GAGCTC	1 cut(s)	389
StuI	AGGCCT	1 cut(s)	947
StyI	CCWWGG	5 cut(s)	286, 948, 1650, 1926, 2093
TaaI	ACNGT	7 cut(s)	553, 1117, 1344, 1366, 1503, 1589, 1935
TaiI	ACGT	3 cut(s)	246, 357, 792
TatI	WGTACW	2 cut(s)	429, 1759
TauI	GCSGC	3 cut(s)	7, 173, 1667
TfiI	GAWTC	4 cut(s)	78, 183, 734, 875
Tru1I	TTAA	5 cut(s)	9, 611, 615, 707, 1946
Tru9I	TTAA	5 cut(s)	9, 611, 615, 707, 1946
TscAI	CASTG	4 cut(s)	457, 498, 877, 1341
TseFI	GTSAC	4 cut(s)	306, 1184, 1234, 1483
TseI	GCWGC	4 cut(s)	278, 365, 683, 686
Tsp45I	GTSAC	4 cut(s)	306, 1184, 1234, 1483
TspDTI	ATGAA	5 cut(s)	175, 1140, 1982, 2047, 2084
TspGWI	ACGGA	5 cut(s)	215, 1214, 1433, 1502, 2088
TspMI	CCCGGG	2 cut(s)	954, 1989
TspRI	CASTG	4 cut(s)	457, 498, 877, 1341
Tth111I	GACNNNGTC	1 cut(s)	1961
Van91I	CCANNNNNTGG	1 cut(s)	949
VpaK11BI	GGWCC	6 cut(s)	145, 1071, 1097, 1138, 2015, 2042
VspI	ATTAAT	2 cut(s)	611, 707
XagI	CCTNNNNNAGG	1 cut(s)	308
XapI	RAATTY	3 cut(s)	47, 638, 1079
XceI	RCATGY	1 cut(s)	934
XhoI	CTCGAG	1 cut(s)	1091
XmaI	CCCGGG	2 cut(s)	954, 1989
XmiI	GTMKAC	1 cut(s)	1368
XspI	CTAG	3 cut(s)	749, 816, 1101
ZrmI	AGTACT	1 cut(s)	1761
Zsp2I	ATGCAT	1 cut(s)	1884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.