Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

66593262 .. 66598606

Gene Structure 5345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00332450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGATGTTTGGAACCGAAGCCGTCTTACCAATTGAGGTAACCCAACCTACCGCTAGGGTTGAAGGCTACCGCCACGAGGCCAACAGGGAAGGCATCAACCTCGACAGAGACCTCTTGGAGGAGAAACGAAACAAGGCCCACTCCGAGAAATCGCAAGACAAACGGCGGATTGTCGTGGACGAGCCGCCACCGCCTTGCCAAGACAAAGCATCGAAGCTCTTGAAGCCGGGGACCGAGGCAAATCAGTCCCACATCGAAAACATGAAGAGGGTCGCACCTTCTTCACCTACAAAAGGTTCTTTCTTCTCTCCTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

105

Amino Acids

11.83

Weight (kDa)

7.92

Isoelectric Point (pI)

68.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	51, 70, 166, 185, 191
AfiI	CCNNNNNNNGG	3 cut(s)	76, 118, 293
AgsI	TTSAA	2 cut(s)	62, 223
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	102
AoxI	GGCC	2 cut(s)	78, 135
AspS9I	GGNCC	2 cut(s)	136, 231
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	1 cut(s)	276
AvaII	GGWCC	1 cut(s)	231
BarI	GAAGNNNNNNTAC	2 cut(s)	9, 41
BauI	CACGAG	1 cut(s)	74
BceAI	ACGGC	2 cut(s)	5, 179
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	102
BfaI	CTAG	1 cut(s)	54
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	136, 231
BmiI	GGNNCC	2 cut(s)	13, 232
BmrFI	CCNGG	1 cut(s)	228
BmsI	GCATC	2 cut(s)	102, 218
BpuMI	CCSGG	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	227, 234
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 118, 293
BseDI	CCNNGG	2 cut(s)	227, 234
BseLI	CCNNNNNNNGG	3 cut(s)	76, 118, 293
BseRI	GAGGAG	2 cut(s)	134, 300
BshFI	GGCC	2 cut(s)	80, 137
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	2 cut(s)	232, 244
BslI	CCNNNNNNNGG	3 cut(s)	76, 118, 293
BsmAI	GTCTC	1 cut(s)	102
BsmFI	GGGAC	2 cut(s)	232, 244
BsnI	GGCC	2 cut(s)	80, 137
Bso31I	GGTCTC	1 cut(s)	102
BspACI	CCGC	5 cut(s)	51, 70, 166, 185, 191
BspANI	GGCC	2 cut(s)	80, 137
BspLI	GGNNCC	2 cut(s)	13, 232
BspTNI	GGTCTC	1 cut(s)	102
BssECI	CCNNGG	2 cut(s)	227, 234
BssSI	CACGAG	1 cut(s)	74
Bst2BI	CACGAG	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	260
BstEII	GGTNACC	1 cut(s)	37
BstENI	CCTNNNNNAGG	2 cut(s)	116, 291
BstMAI	GTCTC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 223
BstPI	GGTNACC	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	80, 137
Cfr13I	GGNCC	2 cut(s)	136, 231
CviAII	CATG	1 cut(s)	262
CviJI	RGCY	7 cut(s)	20, 66, 80, 137, 184, 217, 226
CviKI_1	RGCY	7 cut(s)	20, 66, 80, 137, 184, 217, 226
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	181
Eco31I	GGTCTC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	231
Eco91I	GGTNACC	1 cut(s)	37
EcoNI	CCTNNNNNAGG	2 cut(s)	116, 291
EcoO65I	GGTNACC	1 cut(s)	37
FaeI	CATG	1 cut(s)	265
FaiI	YATR	1 cut(s)	263
FaqI	GGGAC	2 cut(s)	232, 244
FatI	CATG	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	1 cut(s)	185
HaeIII	GGCC	2 cut(s)	80, 137
HapII	CCGG	1 cut(s)	227
Hin1II	CATG	1 cut(s)	265
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	276
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	220
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	3 cut(s)	56, 83, 288
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 223
Hsp92II	CATG	1 cut(s)	265
LpnPI	CCDG	2 cut(s)	70, 240
LweI	GCATC	2 cut(s)	102, 218
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	37
MboII	GAAGA	3 cut(s)	273, 277, 295
MfeI	CAATTG	1 cut(s)	30
MluCI	AATT	1 cut(s)	30
MnlI	CCTC	7 cut(s)	28, 70, 110, 112, 122, 229, 261
MseI	TTAA	1 cut(s)	316
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	228
MunI	CAATTG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	190, 223
NciI	CCSGG	1 cut(s)	228
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	2 cut(s)	13, 232
PkrI	GCNGC	1 cut(s)	186
PspEI	GGTNACC	1 cut(s)	37
PspN4I	GGNNCC	2 cut(s)	13, 232
PspPI	GGNCC	2 cut(s)	136, 231
SaqAI	TTAA	1 cut(s)	316
SatI	GCNGC	1 cut(s)	185
Sau96I	GGNCC	2 cut(s)	136, 231
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	8 cut(s)	39, 49, 102, 114, 219, 280, 289, 298
SfaNI	GCATC	2 cut(s)	102, 218
SinI	GGWCC	1 cut(s)	231
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	5 cut(s)	51, 70, 166, 185, 191
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	226
TaqI	TCGA	3 cut(s)	102, 212, 255
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	1 cut(s)	30
TauI	GCSGC	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	316
Tru9I	TTAA	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	231
XagI	CCTNNNNNAGG	2 cut(s)	116, 291
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.