Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002764.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

194930 .. 195544

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002764.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ctgcgtcgtccggcattttggcgtctgaaaaccttcatagcaggtcacatgttgatgatgaaagtgccgaccccggccggtacagccacgatccggggtgatcaggccgctgcaaggaaatgttattctctaactgtatcccgcggtaggggaaagtttgaaatgttgcacatagctactaaccctcagttggacaggtacgaggatcccagggccgataccgaccccgacgaagaacggcccgatgccgtagaagacattgaagaggtggtgctatcagagcagttcccggacagaactgttaggattggtacaaagctgtctccggttgtcagggaaggattgatctcgtttctccgctctaacacatctgcattcgcttggtcctatgaggacatgcccggtatactgccagaggtagccacacacaatcttagtattgttccttactcaacaccggtaagacaaaagcgaagggccttcacacacgataagtaccgggctatccaggttgaggtaaagaagttgatcgccatcaactttgttagggctataaatctatatttatacatcatacactccaaagagctacatatagcaattcaaagaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

204

Amino Acids

23.39

Weight (kDa)

9.6

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	32
AccBSI	CCGCTC	1 cut(s)	360
AccI	GTMKAC	1 cut(s)	406
AccII	CGCG	1 cut(s)	144
AciI	CCGC	4 cut(s)	108, 142, 144, 358
AclWI	GGATC	3 cut(s)	85, 200, 213
AcoI	YGGCCR	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	22
AfaI	GTAC	4 cut(s)	82, 200, 313, 497
AfiI	CCNNNNNNNGG	6 cut(s)	93, 114, 147, 148, 190, 514
AflIII	ACRYGT	1 cut(s)	48
AgeI	ACCGGT	1 cut(s)	457
AgsI	TTSAA	3 cut(s)	161, 263, 605
AjnI	CCWGG	2 cut(s)	209, 507
AluBI	AGCT	3 cut(s)	176, 319, 589
AluI	AGCT	3 cut(s)	176, 319, 589
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	3 cut(s)	85, 200, 213
AoxI	GGCC	5 cut(s)	75, 105, 213, 239, 477
ApeKI	GCWGC	1 cut(s)	110
AsiGI	ACCGGT	1 cut(s)	457
Asp700I	GAANNNNTTC	1 cut(s)	32
AspS9I	GGNCC	4 cut(s)	213, 240, 384, 477
AsuC2I	CCSGG	5 cut(s)	74, 95, 290, 402, 500
AsuHPI	GGTGA	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	384
BamHI	GGATCC	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	542
BceAI	ACGGC	2 cut(s)	233, 254
BciT130I	CCWGG	2 cut(s)	211, 509
BciVI	GTATCC	1 cut(s)	148
BclI	TGATCA	1 cut(s)	100
BcnI	CCSGG	5 cut(s)	74, 95, 290, 402, 500
BcoDI	GTCTC	1 cut(s)	327
BfuAI	ACCTGC	1 cut(s)	32
BfuI	GTATCC	1 cut(s)	148
BisI	GCNGC	2 cut(s)	108, 111
BlsI	GCNGC	2 cut(s)	109, 112
Bme1390I	CCNGG	7 cut(s)	74, 95, 211, 290, 402, 500, 509
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	4 cut(s)	213, 240, 384, 477
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	7 cut(s)	74, 95, 211, 290, 402, 500, 509
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	261
BpuMI	CCSGG	5 cut(s)	74, 95, 290, 402, 500
BsaBI	GATNNNNATC	1 cut(s)	533
BsaHI	GRCGYC	1 cut(s)	22
BsaJI	CCNNGG	5 cut(s)	72, 94, 142, 209, 210
BsaWI	WCCGGW	2 cut(s)	325, 457
Bsc4I	CCNNNNNNNGG	6 cut(s)	93, 114, 147, 148, 190, 514
Bse118I	RCCGGY	2 cut(s)	77, 457
Bse8I	GATNNNNATC	1 cut(s)	533
BseBI	CCWGG	2 cut(s)	211, 509
BseDI	CCNNGG	5 cut(s)	72, 94, 142, 209, 210
BseJI	GATNNNNATC	1 cut(s)	533
BseLI	CCNNNNNNNGG	6 cut(s)	93, 114, 147, 148, 190, 514
BseMII	CTCAG	1 cut(s)	200
BseX3I	CGGCCG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	97
Bsh1236I	CGCG	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	5 cut(s)	77, 107, 215, 241, 479
BshTI	ACCGGT	1 cut(s)	457
BsiEI	CGRYCG	1 cut(s)	78
BsiSI	CCGG	9 cut(s)	11, 74, 78, 94, 290, 326, 402, 458, 499
BslI	CCNNNNNNNGG	6 cut(s)	93, 114, 147, 148, 190, 514
BsmAI	GTCTC	1 cut(s)	327
BsmI	GAATGC	1 cut(s)	374
BsnI	GGCC	5 cut(s)	77, 107, 215, 241, 479
Bsp143I	GATC	5 cut(s)	90, 100, 205, 345, 528
BspACI	CCGC	4 cut(s)	108, 142, 144, 358
BspANI	GGCC	5 cut(s)	77, 107, 215, 241, 479
BspCNI	CTCAG	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	207
BspMI	ACCTGC	1 cut(s)	32
BspPI	GGATC	3 cut(s)	85, 200, 213
BsrBI	CCGCTC	1 cut(s)	360
BsrFI	RCCGGY	2 cut(s)	77, 457
BssAI	RCCGGY	2 cut(s)	77, 457
BssECI	CCNNGG	5 cut(s)	72, 94, 142, 209, 210
BssMI	GATC	5 cut(s)	90, 100, 205, 345, 528
BssNAI	GTATAC	1 cut(s)	407
BssNI	GRCGYC	1 cut(s)	22
Bst1107I	GTATAC	1 cut(s)	407
Bst2UI	CCWGG	2 cut(s)	211, 509
Bst4CI	ACNGT	2 cut(s)	136, 301
Bst6I	CTCTTC	1 cut(s)	258
BstACI	GRCGYC	1 cut(s)	22
BstDEI	CTNAG	2 cut(s)	186, 434
BstDSI	CCRYGG	1 cut(s)	142
BstFNI	CGCG	1 cut(s)	144
BstKTI	GATC	5 cut(s)	93, 103, 208, 348, 531
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	5 cut(s)	90, 100, 205, 345, 528
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 280
BstNI	CCWGG	2 cut(s)	211, 509
BstNSI	RCATGY	2 cut(s)	52, 400
BstSCI	CCNGG	7 cut(s)	72, 93, 209, 288, 400, 498, 507
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BstZ17I	GTATAC	1 cut(s)	407
BstZI	CGGCCG	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	148
BsuRI	GGCC	5 cut(s)	77, 107, 215, 241, 479
BtgI	CCRYGG	1 cut(s)	142
BveI	ACCTGC	1 cut(s)	32
Cfr10I	RCCGGY	2 cut(s)	77, 457
Cfr13I	GGNCC	4 cut(s)	213, 240, 384, 477
Cfr42I	CCGCGG	1 cut(s)	145
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	4 cut(s)	81, 199, 312, 496
CspAI	ACCGGT	1 cut(s)	457
CviAII	CATG	2 cut(s)	49, 397
CviQI	GTAC	4 cut(s)	81, 199, 312, 496
DdeI	CTNAG	2 cut(s)	186, 434
DpnI	GATC	5 cut(s)	92, 102, 207, 347, 530
DpnII	GATC	5 cut(s)	90, 100, 205, 345, 528
EaeI	YGGCCR	1 cut(s)	75
EagI	CGGCCG	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
EclXI	CGGCCG	1 cut(s)	75
Eco47I	GGWCC	1 cut(s)	384
Eco52I	CGGCCG	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	477
EcoRII	CCWGG	2 cut(s)	209, 507
FaeI	CATG	2 cut(s)	52, 400
FatI	CATG	2 cut(s)	48, 396
FauI	CCCGC	1 cut(s)	149
FbaI	TGATCA	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	406
Fnu4HI	GCNGC	2 cut(s)	108, 111
Fsp4HI	GCNGC	2 cut(s)	108, 111
GluI	GCNGC	2 cut(s)	108, 111
HaeIII	GGCC	5 cut(s)	77, 107, 215, 241, 479
HapII	CCGG	9 cut(s)	11, 74, 78, 94, 290, 326, 402, 458, 499
HgaI	GACGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	2 cut(s)	52, 400
HpaII	CCGG	9 cut(s)	11, 74, 78, 94, 290, 326, 402, 458, 499
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	407
Hpy188I	TCNGA	2 cut(s)	27, 280
Hpy8I	GTNNAC	1 cut(s)	407
Hpy99I	CGWCG	2 cut(s)	9, 233
HpyAV	CCTTC	4 cut(s)	43, 332, 468, 490
HpyCH4III	ACNGT	2 cut(s)	136, 301
HpyCH4V	TGCA	3 cut(s)	113, 169, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 280
HpyF3I	CTNAG	2 cut(s)	186, 434
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	2 cut(s)	52, 400
Ksp22I	TGATCA	1 cut(s)	100
KspI	CCGCGG	1 cut(s)	145
Kzo9I	GATC	5 cut(s)	90, 100, 205, 345, 528
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	235
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	5 cut(s)	92, 102, 207, 347, 530
MbiI	CCGCTC	1 cut(s)	360
MboI	GATC	5 cut(s)	90, 100, 205, 345, 528
MboII	GAAGA	3 cut(s)	245, 266, 275
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	1 cut(s)	600
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	6 cut(s)	195, 196, 259, 385, 409, 508
MroXI	GAANNNNTTC	1 cut(s)	32
MslI	CAYNNNNRTG	1 cut(s)	53
MspA1I	CMGCKG	2 cut(s)	110, 144
MspI	CCGG	9 cut(s)	11, 74, 78, 94, 290, 326, 402, 458, 499
MspR9I	CCNGG	7 cut(s)	74, 95, 211, 290, 402, 500, 509
Mva1269I	GAATGC	1 cut(s)	374
MvaI	CCWGG	2 cut(s)	211, 509
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	2 cut(s)	83, 280
NciI	CCSGG	5 cut(s)	74, 95, 290, 402, 500
NdeII	GATC	5 cut(s)	90, 100, 205, 345, 528
NlaIII	CATG	2 cut(s)	52, 400
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	1 cut(s)	44
NspI	RCATGY	2 cut(s)	52, 400
PasI	CCCWGGG	1 cut(s)	210
PciI	ACATGT	1 cut(s)	48
PctI	GAATGC	1 cut(s)	374
PdmI	GAANNNNTTC	1 cut(s)	32
PfoI	TCCNGGA	1 cut(s)	288
PinAI	ACCGGT	1 cut(s)	457
PkrI	GCNGC	2 cut(s)	109, 112
PscI	ACATGT	1 cut(s)	48
Psp6I	CCWGG	2 cut(s)	209, 507
PspGI	CCWGG	2 cut(s)	209, 507
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	4 cut(s)	213, 240, 384, 477
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	4 cut(s)	82, 200, 313, 497
RsaNI	GTAC	4 cut(s)	81, 199, 312, 496
RseI	CAYNNNNRTG	1 cut(s)	53
SacII	CCGCGG	1 cut(s)	145
SatI	GCNGC	2 cut(s)	108, 111
Sau3AI	GATC	5 cut(s)	90, 100, 205, 345, 528
Sau96I	GGNCC	4 cut(s)	213, 240, 384, 477
ScrFI	CCNGG	7 cut(s)	74, 95, 211, 290, 402, 500, 509
SfaNI	GCATC	1 cut(s)	235
Sfr303I	CCGCGG	1 cut(s)	145
SgrBI	CCGCGG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	53
Sse9I	AATT	1 cut(s)	600
SsiI	CCGC	4 cut(s)	108, 142, 144, 358
StyD4I	CCNGG	7 cut(s)	72, 93, 209, 288, 400, 498, 507
TaaI	ACNGT	2 cut(s)	136, 301
TasI	AATT	1 cut(s)	600
TauI	GCSGC	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	25, 74
VpaK11BI	GGWCC	1 cut(s)	384
XceI	RCATGY	2 cut(s)	52, 400
XmiI	GTMKAC	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.