Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

8830551 .. 8831034

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14364.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 484 bp

ATGGTCCCCAAGCCTAATGGCAAATGGCGAATGTGTGTCGACTACACTAATCTGAACAAAGCATCCCCCATGGACAGCTTCCCCTTGCCACGGATCGACCAGTTGGTAGATTCCACAGCTGGGTTCAAGATGCTCAGTTTCCTGGATGCCTACTCGGGATATAACCAAATCAAAATGAAACTCGCAGACCAAGAACACACCACTTTTGTGACAGACAAAGGACTATATTGTTACGAGGTCATGCCTTTCGGCCTCAAAAACGTGGGAGCCACCTATCAAAGGTTAGTCAATGCCATGTTTGAAGAAGAAATCGGGGAAGTCATGGAGGTCTACGTGGATGACATGTTGGTCAAGAGTAAGACAGATGATGACCACATTGCCAACCTCGGCCGGGTCTTTGACAAGCTCCTCACCCATGGGATGCCCCTCAACCCACAAAAATGTATCCTGGCTGTTGGGGGAGGAAAATTTTTGGGTTTTCATG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

161

Amino Acids

18.17

Weight (kDa)

5.77

Isoelectric Point (pI)

25.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	2 - 161	2e-30	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	347
AccI	GTMKAC	2 cut(s)	39, 330
AclWI	GGATC	1 cut(s)	101
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	1 cut(s)	467
AfiI	CCNNNNNNNGG	4 cut(s)	90, 120, 279, 391
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	2 cut(s)	127, 302
AjnI	CCWGG	2 cut(s)	141, 447
AleI	CACNNNNGTG	1 cut(s)	206
AloI	GAACNNNNNNTCC	2 cut(s)	47, 79
AluBI	AGCT	3 cut(s)	78, 119, 406
AluI	AGCT	3 cut(s)	78, 119, 406
AlwI	GGATC	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	154
AoxI	GGCC	2 cut(s)	250, 388
ApoI	RAATTY	1 cut(s)	467
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	403
AvaI	CYCGRG	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	4
BciT130I	CCWGG	2 cut(s)	143, 449
BciVI	GTATCC	1 cut(s)	455
BcnI	CCSGG	1 cut(s)	392
BfuI	GTATCC	1 cut(s)	455
Bme1390I	CCNGG	3 cut(s)	143, 392, 449
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 268
BmrFI	CCNGG	3 cut(s)	143, 392, 449
BmsI	GCATC	4 cut(s)	71, 120, 136, 411
BpuMI	CCSGG	1 cut(s)	392
BsaAI	YACGTR	1 cut(s)	334
BsaJI	CCNNGG	4 cut(s)	69, 89, 385, 415
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 120, 279, 391
Bse1I	ACTGG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	2 cut(s)	143, 449
BseDI	CCNNGG	4 cut(s)	69, 89, 385, 415
BseGI	GGATG	4 cut(s)	62, 151, 343, 426
BseLI	CCNNNNNNNGG	4 cut(s)	90, 120, 279, 391
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	398
BseX3I	CGGCCG	1 cut(s)	388
BseYI	CCCAGC	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	391
BshFI	GGCC	2 cut(s)	252, 390
BsiEI	CGRYCG	1 cut(s)	391
BsiHKCI	CYCGRG	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	391
BslI	CCNNNNNNNGG	4 cut(s)	90, 120, 279, 391
BsnI	GGCC	2 cut(s)	252, 390
BsoBI	CYCGRG	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	93
Bsp19I	CCATGG	2 cut(s)	69, 415
BspANI	GGCC	2 cut(s)	252, 390
BspCNI	CTCAG	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	6, 268
BspPI	GGATC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	4 cut(s)	69, 89, 385, 415
BssMI	GATC	1 cut(s)	93
BssT1I	CCWWGG	2 cut(s)	69, 415
Bst2UI	CCWGG	2 cut(s)	143, 449
BstBAI	YACGTR	1 cut(s)	334
BstDEI	CTNAG	1 cut(s)	134
BstDSI	CCRYGG	3 cut(s)	69, 89, 415
BstENI	CCTNNNNNAGG	1 cut(s)	277
BstF5I	GGATG	4 cut(s)	62, 151, 343, 426
BstKTI	GATC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	93
BstMCI	CGRYCG	1 cut(s)	391
BstNI	CCWGG	2 cut(s)	143, 449
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	3 cut(s)	141, 390, 447
BstZI	CGGCCG	1 cut(s)	388
BsuI	GTATCC	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	252, 390
BtgI	CCRYGG	3 cut(s)	69, 89, 415
BtsCI	GGATG	4 cut(s)	62, 151, 343, 426
Cfr13I	GGNCC	1 cut(s)	4
CviAII	CATG	7 cut(s)	70, 241, 295, 322, 343, 416, 482
CviJI	RGCY	8 cut(s)	13, 78, 119, 252, 269, 390, 406, 452
CviKI_1	RGCY	8 cut(s)	13, 78, 119, 252, 269, 390, 406, 452
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
DrdI	GACNNNNNNGTC	1 cut(s)	347
DseDI	GACNNNNNNGTC	1 cut(s)	347
EaeI	YGGCCR	1 cut(s)	388
EagI	CGGCCG	1 cut(s)	388
EclXI	CGGCCG	1 cut(s)	388
Eco130I	CCWWGG	2 cut(s)	69, 415
Eco47I	GGWCC	1 cut(s)	4
Eco52I	CGGCCG	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	154
EcoNI	CCTNNNNNAGG	1 cut(s)	277
EcoRII	CCWGG	2 cut(s)	141, 447
EcoT14I	CCWWGG	2 cut(s)	69, 415
ErhI	CCWWGG	2 cut(s)	69, 415
FaeI	CATG	6 cut(s)	73, 244, 298, 325, 346, 419
FaiI	YATR	9 cut(s)	71, 162, 226, 242, 296, 323, 344, 417, 483
FatI	CATG	6 cut(s)	69, 240, 294, 321, 342, 415
FblI	GTMKAC	2 cut(s)	39, 330
FokI	GGATG	4 cut(s)	49, 158, 350, 433
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	252, 390
HapII	CCGG	1 cut(s)	391
Hin1II	CATG	6 cut(s)	73, 244, 298, 325, 346, 419
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	2 cut(s)	40, 331
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	3 cut(s)	127, 156, 352
Hpy8I	GTNNAC	2 cut(s)	40, 331
HpyCH4IV	ACGT	2 cut(s)	261, 333
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	2 cut(s)	261, 333
Hsp92II	CATG	6 cut(s)	73, 244, 298, 325, 346, 419
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	2 cut(s)	266, 411
LpnPI	CCDG	7 cut(s)	105, 113, 128, 155, 404, 434, 461
LweI	GCATC	4 cut(s)	71, 120, 136, 411
MaeII	ACGT	2 cut(s)	261, 333
MaeIII	GTNAC	2 cut(s)	208, 230
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	2 cut(s)	314, 317
MluCI	AATT	1 cut(s)	467
MnlI	CCTC	7 cut(s)	229, 263, 319, 395, 419, 437, 455
MslI	CAYNNNNRTG	2 cut(s)	206, 439
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	3 cut(s)	143, 392, 449
MvaI	CCWGG	2 cut(s)	143, 449
NciI	CCSGG	1 cut(s)	392
NcoI	CCATGG	2 cut(s)	69, 415
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	6 cut(s)	73, 244, 298, 325, 346, 419
NlaIV	GGNNCC	2 cut(s)	6, 268
NmeAIII	GCCGAG	1 cut(s)	366
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	346
OliI	CACNNNNGTG	1 cut(s)	206
PciI	ACATGT	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	110
PfoI	TCCNGGA	1 cut(s)	141
Ppu21I	YACGTR	1 cut(s)	334
PscI	ACATGT	1 cut(s)	342
Psp6I	CCWGG	2 cut(s)	141, 447
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	2 cut(s)	141, 447
PspN4I	GGNNCC	2 cut(s)	6, 268
PspPI	GGNCC	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	119
RseI	CAYNNNNRTG	2 cut(s)	206, 439
SalI	GTCGAC	1 cut(s)	38
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	3 cut(s)	143, 392, 449
SfaNI	GCATC	4 cut(s)	71, 120, 136, 411
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	206, 439
Sse9I	AATT	1 cut(s)	467
StyD4I	CCNGG	3 cut(s)	141, 390, 447
StyI	CCWWGG	2 cut(s)	69, 415
TaiI	ACGT	2 cut(s)	264, 336
TaqI	TCGA	2 cut(s)	39, 96
TasI	AATT	1 cut(s)	467
TfiI	GAWTC	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	191, 470
TspGWI	ACGGA	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	277
XapI	RAATTY	1 cut(s)	467
XceI	RCATGY	1 cut(s)	346
XmiI	GTMKAC	2 cut(s)	39, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.