Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000756.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

146416 .. 146772

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000756.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgatcccccgggtacagaacagcaaggcagacgttatcgccaggttggcaatgtctcccccaaacaccgatatgggaaacctccagttggaaatcctggacaaatcgagtatcgataagccattctcggaaatattcttgaccgagagcgagcgtccgccttcgtggatggaccagtttatcgactacctctccaagggtatcgagccccaggacaagaatatcgccaccaggctccgcagaagagcaacgttgtatacggtccgagagggaaaactgtataggaagggaaggtctttcccccttttgaagtgcatctcacaaggaggggcagcgaatcctgctatcactgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

118

Amino Acids

13.32

Weight (kDa)

9.61

Isoelectric Point (pI)

62.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	257
AciI	CCGC	2 cut(s)	158, 238
AclI	AACGTT	1 cut(s)	251
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	2 cut(s)	88, 196
AgsI	TTSAA	1 cut(s)	310
AjnI	CCWGG	4 cut(s)	41, 96, 210, 230
Alw26I	GTCTC	1 cut(s)	60
Ama87I	CYCGRG	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	332
AspS9I	GGNCC	2 cut(s)	172, 262
AsuC2I	CCSGG	2 cut(s)	10, 11
AvaI	CYCGRG	1 cut(s)	9
AvaII	GGWCC	2 cut(s)	172, 262
BanII	GRGCYC	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	1 cut(s)	163
BciT130I	CCWGG	4 cut(s)	43, 98, 212, 232
BcnI	CCSGG	2 cut(s)	10, 11
BcoDI	GTCTC	1 cut(s)	60
BglI	GCCNNNNNGGC	1 cut(s)	47
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	6 cut(s)	10, 11, 43, 98, 212, 232
Bme18I	GGWCC	2 cut(s)	172, 262
BmeT110I	CYCGRG	1 cut(s)	9
BmgT120I	GGNCC	2 cut(s)	172, 262
BmiI	GGNNCC	1 cut(s)	236
BmrFI	CCNGG	6 cut(s)	10, 11, 43, 98, 212, 232
BmsI	GCATC	1 cut(s)	324
BpmI	CTGGAG	1 cut(s)	68
BpuMI	CCSGG	2 cut(s)	10, 11
Bsa29I	ATCGAT	1 cut(s)	114
BsaJI	CCNNGG	4 cut(s)	8, 9, 195, 210
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 196
Bse1I	ACTGG	2 cut(s)	85, 175
Bse3DI	GCAATG	1 cut(s)	57
BseBI	CCWGG	4 cut(s)	43, 98, 212, 232
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	4 cut(s)	8, 9, 195, 210
BseGI	GGATG	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	88, 196
BseMI	GCAATG	1 cut(s)	57
BseNI	ACTGG	2 cut(s)	85, 175
BseXI	GCAGC	1 cut(s)	344
BshVI	ATCGAT	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	10
BslI	CCNNNNNNNGG	2 cut(s)	88, 196
BsmAI	GTCTC	1 cut(s)	60
BsoBI	CYCGRG	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	2 cut(s)	158, 238
BspDI	ATCGAT	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	236
BspQI	GCTCTTC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	85, 175
BssECI	CCNNGG	4 cut(s)	8, 9, 195, 210
BssMI	GATC	1 cut(s)	3
BssNAI	GTATAC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	195
Bst1107I	GTATAC	1 cut(s)	258
Bst2UI	CCWGG	4 cut(s)	43, 98, 212, 232
Bst4CI	ACNGT	3 cut(s)	262, 279, 352
Bst6I	CTCTTC	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	152
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	174
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 341
BstNI	CCWGG	4 cut(s)	43, 98, 212, 232
BstSCI	CCNGG	6 cut(s)	8, 9, 41, 96, 210, 230
BstV1I	GCAGC	1 cut(s)	344
BstZ17I	GTATAC	1 cut(s)	258
Bsu15I	ATCGAT	1 cut(s)	114
BsuTUI	ATCGAT	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	172, 262
Cfr9I	CCCGGG	1 cut(s)	9
ClaI	ATCGAT	1 cut(s)	114
CpoI	CGGWCCG	1 cut(s)	262
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	14
CspI	CGGWCCG	1 cut(s)	262
CviJI	RGCY	3 cut(s)	121, 208, 235
CviKI_1	RGCY	3 cut(s)	121, 208, 235
CviQI	GTAC	1 cut(s)	14
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
EciI	GGCGGA	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	210
Eco47I	GGWCC	2 cut(s)	172, 262
Eco88I	CYCGRG	1 cut(s)	9
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoRII	CCWGG	4 cut(s)	41, 96, 210, 230
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	195
FaiI	YATR	4 cut(s)	74, 258, 282, 355
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	333
GluI	GCNGC	1 cut(s)	333
GsuI	CTGGAG	1 cut(s)	68
HapII	CCGG	1 cut(s)	10
HgaI	GACGC	1 cut(s)	143
HinfI	GANTC	1 cut(s)	337
HpaII	CCGG	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	2 cut(s)	130, 266
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	258
HpyAV	CCTTC	3 cut(s)	171, 280, 285
HpyCH4III	ACNGT	3 cut(s)	262, 279, 352
HpyCH4IV	ACGT	2 cut(s)	33, 251
HpyCH4V	TGCA	1 cut(s)	315
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 341
HpySE526I	ACGT	2 cut(s)	33, 251
Kzo9I	GATC	1 cut(s)	3
LguI	GCTCTTC	1 cut(s)	238
LmnI	GCTCC	1 cut(s)	240
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	1 cut(s)	324
MaeII	ACGT	2 cut(s)	33, 251
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	255
MhlI	GDGCHC	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	4 cut(s)	92, 200, 262, 320
MslI	CAYNNNNRTG	1 cut(s)	71
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	6 cut(s)	10, 11, 43, 98, 212, 232
MvaI	CCWGG	4 cut(s)	43, 98, 212, 232
MwoI	GCNNNNNNNGC	2 cut(s)	47, 341
NciI	CCSGG	2 cut(s)	10, 11
NdeII	GATC	1 cut(s)	3
NlaIV	GGNNCC	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	337
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	1 cut(s)	334
Psp1406I	AACGTT	1 cut(s)	251
Psp6I	CCWGG	4 cut(s)	41, 96, 210, 230
PspGI	CCWGG	4 cut(s)	41, 96, 210, 230
PspN4I	GGNNCC	1 cut(s)	236
PspPI	GGNCC	2 cut(s)	172, 262
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	71
Rsr2I	CGGWCCG	1 cut(s)	262
RsrII	CGGWCCG	1 cut(s)	262
SapI	GCTCTTC	1 cut(s)	238
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	2 cut(s)	172, 262
ScrFI	CCNGG	6 cut(s)	10, 11, 43, 98, 212, 232
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	6 cut(s)	36, 47, 84, 192, 254, 296
SfaNI	GCATC	1 cut(s)	324
SinI	GGWCC	2 cut(s)	172, 262
SmaI	CCCGGG	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	71
SsiI	CCGC	2 cut(s)	158, 238
SspI	AATATT	1 cut(s)	135
StyD4I	CCNGG	6 cut(s)	8, 9, 41, 96, 210, 230
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	3 cut(s)	262, 279, 352
TaiI	ACGT	2 cut(s)	36, 254
TaqI	TCGA	4 cut(s)	107, 114, 183, 204
TaqII	GACCGA	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	337
TscAI	CASTG	1 cut(s)	355
TseI	GCWGC	1 cut(s)	332
TspMI	CCCGGG	1 cut(s)	9
TspRI	CASTG	1 cut(s)	355
VpaK11BI	GGWCC	2 cut(s)	172, 262
XagI	CCTNNNNNAGG	1 cut(s)	194
XmaI	CCCGGG	1 cut(s)	9
XmiI	GTMKAC	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.