Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

19679326 .. 19681011

Gene Structure 1686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G015840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1686 bp

ATGCAGAACCCTGAACACTCGGGGCGCCTCAGCAAATGGGCCATTGAGCTCAGCGAATTCGACATAAAGTACAGGCCAAGAACCGCCATGAAGGGCCAGGCAGTGGCGGACTTCATCGCTGAACTTACTGAGCGTCAGCCGAAACCCGGTACTCAAACAGAGCCAGGAACAGAAATAGTAACCGATGCAGAGGCAACTCCCCTACAGTCAGATTGGAACCTGCATGTGGACGGCTCTGCCTGTGCCAAGGCCAGCGGCGCCGGAGTCATCTTAACAGGACCCGGGGGACTGAACGCGGAGTACGCGTTGAAATTCAACTTCAAAGCTTCAAACAATATGGCGGAGTACGAGGCGCTCATCGCCGGTCTACTCCTCGCCATTGACTCAGGAGCTGACAGCGTCAACATATTCAGCGACTCGCAACTAGTCGTTAACCAGGTCAACGACAGCTTCCAAGCCAAGGACCAGCAGTTAGCGGCATATTTGGGGTACGTCAAAACGTTGCTAAAAAAGTTCAAATTTCACACCATCACACAAATCCCCAGGGAAAAGAACGCTAAGGCTGATTCACTGGCGAGACTGGCAACCGCCCAACCACATCAGAGTCCAGCGGACACAAGGGTGGAGTACCTTGACAAGCCAAGTATCACAAAGACCCTGGCGGAAATCTTCAACGTTCAAGTCAACCCCAGCTGGATGGACGAGATCATTGTGTATAAGCGCAGCGGCACATTGCCAGAGGATAAGGTCCAGGCAAGACAGCTCAAGCGGAGAGCAACCCGCTACAACATCCAGTATGGCAAGCTTTACCTCCAAGGATTCACCCATCCCAACCTCCGCTGTCTAACCCCAGAGGAGGGAAAGGTTGTCCTAGCAGAAATCCATGGCGGAGAATGTGGAAACCACACGGGCGCCAGATCCTTGGCCAACCGCACAATGCGACAAGGCTACTTCTGGCCCACACTTGGTGATGACGCCCGGCGGATTTCGAGGTCTTGCCACAAATGCCAACAGTTTGCAGATCTCTCACACGCACCGACGGAACCACTGTCAATCATCATTGGCCCACGGATTCATTCCACGTGGGGCCTTGATTTAATGGGAAAGTTCCAAACCGCCAAGGGCCAGTTCAAATACGTCATTGTTGCCATTGATTACAACAGCAAGTGGATAGAGGCGGAGCCACTAACGGCAATAACTACCGCCAAGGTAATTCCCTTCCTCTGGAAGAATATCTACTGCCGCTATGGTGTCCCACATACAATCATTACAGACAACGGCACACAGTTCAACAATAAGGAACTCATCTCTTTTACCGCCAACTTGGGCACTAAGTTAAGTTTTGCATCTGTCGCCCACCCCCAGACCAACGGCCAGGTCGAAGCAGCGAACAAGATAATCAAAAAGCTGCTAAAAAAGAAGCTCGACGACGCCAAGGGTTTATGGGCGGAAAAGCTTCCAGAAGTCCTATGGGCCATCCGGACAACTCCAACCTCCGCCACCGGCGAGACTCCTTTTTGTATGATGTTCGACACAGAGGCTGTCCTACCCATTGAAGTTACTCAACCTACCGCTAGAGTCGAAGGCTACTGCCCAGAGACCAACAGCGCCGGCGTCAACTTGGACAGGGACCTCCTAGAAGAAAAAAGACACAAGGCCCATTTACACAATTTACAAAACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

561

Amino Acids

62.39

Weight (kDa)

8.66

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_H	PF00075	72 - 153	1.1e-06	RNase H
RVT_3	PF13456	82 - 194	1.6e-19	Reverse transcriptase-like
Integrase_H2C2	PF17921	288 - 339	5.6e-08	Integrase zinc binding domain
rve	PF00665	360 - 454	1.1e-12	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	228
AccB1I	GGYRCC	3 cut(s)	24, 257, 911
AccB7I	CCANNNNNTGG	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	367
AccII	CGCG	2 cut(s)	296, 305
AccIII	TCCGGA	1 cut(s)	1479
AclI	AACGTT	2 cut(s)	500, 675
AclWI	GGATC	1 cut(s)	912
AcoI	YGGCCR	2 cut(s)	924, 1372
AcsI	RAATTY	3 cut(s)	56, 311, 518
AcvI	CACGTG	1 cut(s)	1083
AcyI	GRCGYC	6 cut(s)	25, 258, 912, 975, 1431, 1614
AdeI	CACNNNGTG	1 cut(s)	968
AfaI	GTAC	6 cut(s)	71, 151, 302, 347, 491, 629
AfiI	CCNNNNNNNGG	8 cut(s)	103, 146, 226, 460, 856, 857, 965, 1224
AflIII	ACRYGT	1 cut(s)	303
AhlI	ACTAGT	1 cut(s)	424
AjnI	CCWGG	7 cut(s)	96, 163, 435, 542, 657, 750, 1374
AjuI	GAANNNNNNNTTGG	2 cut(s)	1112, 1144
AleI	CACNNNNGTG	1 cut(s)	620
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	3 cut(s)	571, 1502, 1592
AlwI	GGATC	1 cut(s)	912
AlwNI	CAGNNNCTG	2 cut(s)	392, 1541
Ama87I	CYCGRG	2 cut(s)	19, 281
Aor13HI	TCCGGA	1 cut(s)	1479
ApeKI	GCWGC	3 cut(s)	723, 1385, 1408
ApoI	RAATTY	3 cut(s)	56, 311, 518
Asp700I	GAANNNNTTC	1 cut(s)	1455
AspLEI	GCGC	6 cut(s)	27, 260, 355, 723, 914, 1610
AsuC2I	CCSGG	4 cut(s)	147, 282, 283, 979
AsuHPI	GGTGA	2 cut(s)	814, 980
AvaI	CYCGRG	2 cut(s)	19, 281
AvaII	GGWCC	4 cut(s)	278, 463, 748, 1630
BaeGI	GKGCMC	1 cut(s)	1331
BalI	TGGCCA	1 cut(s)	926
BanI	GGYRCC	3 cut(s)	24, 257, 911
BanII	GRGCYC	1 cut(s)	51
BarI	GAAGNNNNNNTAC	2 cut(s)	1220, 1252
BbrPI	CACGTG	1 cut(s)	1083
Bbv12I	GWGCWC	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	29
BbvI	GCAGC	3 cut(s)	735, 1395, 1397
BccI	CCATC	4 cut(s)	536, 691, 834, 1484
BceAI	ACGGC	4 cut(s)	247, 1206, 1294, 1387
BciT130I	CCWGG	7 cut(s)	98, 165, 437, 544, 659, 752, 1376
BcnI	CCSGG	4 cut(s)	147, 282, 283, 979
BcoDI	GTCTC	3 cut(s)	571, 1502, 1592
BcuI	ACTAGT	1 cut(s)	424
BfaI	CTAG	4 cut(s)	425, 872, 1575, 1637
BfmI	CTRYAG	1 cut(s)	203
BfoI	RGCGCY	5 cut(s)	28, 261, 356, 915, 1611
BfuAI	ACCTGC	1 cut(s)	228
BglII	AGATCT	1 cut(s)	1021
BisI	GCNGC	7 cut(s)	256, 477, 724, 727, 1243, 1386, 1409
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	7 cut(s)	257, 478, 725, 728, 1244, 1387, 1410
Bme18I	GGWCC	4 cut(s)	278, 463, 748, 1630
BmeT110I	CYCGRG	2 cut(s)	19, 281
BmiI	GGNNCC	9 cut(s)	26, 218, 259, 280, 913, 1044, 1088, 1182, 1631
BmsI	GCATC	2 cut(s)	175, 1355
Bpu10I	CCTNAGC	2 cut(s)	29, 558
Bpu1102I	GCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	749
BpuMI	CCSGG	4 cut(s)	147, 282, 283, 979
BsaAI	YACGTR	1 cut(s)	1083
BsaHI	GRCGYC	6 cut(s)	25, 258, 912, 975, 1431, 1614
BsaI	GGTCTC	1 cut(s)	1592
BsaWI	WCCGGW	1 cut(s)	1479
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	8 cut(s)	103, 146, 226, 460, 856, 857, 965, 1224
Bse118I	RCCGGY	3 cut(s)	362, 1502, 1610
Bse1I	ACTGG	4 cut(s)	576, 585, 793, 1126
Bse3DI	GCAATG	1 cut(s)	731
BseAI	TCCGGA	1 cut(s)	1479
BseBI	CCWGG	7 cut(s)	98, 165, 437, 544, 659, 752, 1376
BseGI	GGATG	4 cut(s)	702, 789, 826, 1476
BseLI	CCNNNNNNNGG	8 cut(s)	103, 146, 226, 460, 856, 857, 965, 1224
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	4 cut(s)	43, 64, 120, 399
BseNI	ACTGG	4 cut(s)	576, 585, 793, 1126
BseRI	GAGGAG	2 cut(s)	362, 869
BseSI	GKGCMC	1 cut(s)	1331
BseXI	GCAGC	3 cut(s)	735, 1395, 1397
BseYI	CCCAGC	1 cut(s)	689
Bsh1236I	CGCG	2 cut(s)	296, 305
BshNI	GGYRCC	3 cut(s)	24, 257, 911
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	2 cut(s)	19, 281
BsiSI	CCGG	8 cut(s)	147, 261, 282, 363, 979, 1480, 1503, 1611
BslFI	GGGAC	3 cut(s)	300, 1238, 1643
BslI	CCNNNNNNNGG	8 cut(s)	103, 146, 226, 460, 856, 857, 965, 1224
BsmAI	GTCTC	3 cut(s)	571, 1502, 1592
BsmFI	GGGAC	3 cut(s)	300, 1238, 1643
Bso31I	GGTCTC	1 cut(s)	1592
BsoBI	CYCGRG	2 cut(s)	19, 281
Bsp1286I	GDGCHC	2 cut(s)	51, 1331
Bsp13I	TCCGGA	1 cut(s)	1479
Bsp143I	GATC	3 cut(s)	705, 917, 1021
Bsp1720I	GCTNAGC	1 cut(s)	50
Bsp19I	CCATGG	1 cut(s)	883
BspCNI	CTCAG	4 cut(s)	42, 63, 121, 398
BspEI	TCCGGA	1 cut(s)	1479
BspFNI	CGCG	2 cut(s)	296, 305
BspLI	GGNNCC	9 cut(s)	26, 218, 259, 280, 913, 1044, 1088, 1182, 1631
BspMI	ACCTGC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	912
BspT107I	GGYRCC	3 cut(s)	24, 257, 911
BspTNI	GGTCTC	1 cut(s)	1592
BsrDI	GCAATG	1 cut(s)	731
BsrFI	RCCGGY	3 cut(s)	362, 1502, 1610
BsrI	ACTGG	4 cut(s)	576, 585, 793, 1126
BssAI	RCCGGY	3 cut(s)	362, 1502, 1610
BssMI	GATC	3 cut(s)	705, 917, 1021
BssNI	GRCGYC	6 cut(s)	25, 258, 912, 975, 1431, 1614
BssT1I	CCWWGG	8 cut(s)	246, 459, 814, 883, 921, 1119, 1206, 1434
Bst2UI	CCWGG	7 cut(s)	98, 165, 437, 544, 659, 752, 1376
Bst4CI	ACNGT	4 cut(s)	207, 1014, 1050, 1287
BstACI	GRCGYC	6 cut(s)	25, 258, 912, 975, 1431, 1614
BstBAI	YACGTR	1 cut(s)	1083
BstC8I	GCNNGC	3 cut(s)	253, 803, 1612
BstDEI	CTNAG	6 cut(s)	29, 50, 129, 385, 558, 1332
BstDSI	CCRYGG	2 cut(s)	883, 1067
BstF5I	GGATG	4 cut(s)	702, 789, 826, 1476
BstFNI	CGCG	2 cut(s)	296, 305
BstH2I	RGCGCY	5 cut(s)	28, 261, 356, 915, 1611
BstHHI	GCGC	6 cut(s)	27, 260, 355, 723, 914, 1610
BstKTI	GATC	3 cut(s)	708, 920, 1024
BstMAI	GTCTC	3 cut(s)	571, 1502, 1592
BstMBI	GATC	3 cut(s)	705, 917, 1021
BstMWI	GCNNNNNNNGC	6 cut(s)	257, 302, 359, 581, 1005, 1352
BstNI	CCWGG	7 cut(s)	98, 165, 437, 544, 659, 752, 1376
BstNSI	RCATGY	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	203
BstSLI	GKGCMC	1 cut(s)	1331
BstUI	CGCG	2 cut(s)	296, 305
BstV1I	GCAGC	3 cut(s)	735, 1395, 1397
BstX2I	RGATCY	2 cut(s)	917, 1021
BstXI	CCANNNNNNTGG	2 cut(s)	697, 922
BstYI	RGATCY	2 cut(s)	917, 1021
BtgI	CCRYGG	2 cut(s)	883, 1067
BtgZI	GCGATG	2 cut(s)	100, 343
BtsCI	GGATG	4 cut(s)	702, 789, 826, 1476
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	3 cut(s)	108, 569, 1046
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	3 cut(s)	253, 803, 1612
CaiI	CAGNNNCTG	2 cut(s)	392, 1541
CfoI	GCGC	6 cut(s)	27, 260, 355, 723, 914, 1610
Cfr10I	RCCGGY	3 cut(s)	362, 1502, 1610
Cfr9I	CCCGGG	1 cut(s)	281
CseI	GACGC	5 cut(s)	122, 388, 983, 1439, 1603
CsiI	ACCWGGT	1 cut(s)	435
Csp6I	GTAC	6 cut(s)	70, 150, 301, 346, 490, 628
CviAII	CATG	3 cut(s)	88, 224, 884
CviQI	GTAC	6 cut(s)	70, 150, 301, 346, 490, 628
DdeI	CTNAG	6 cut(s)	29, 50, 129, 385, 558, 1332
DinI	GGCGCC	3 cut(s)	26, 259, 913
DpnI	GATC	3 cut(s)	707, 919, 1023
DpnII	GATC	3 cut(s)	705, 917, 1021
DraIII	CACNNNGTG	1 cut(s)	968
EaeI	YGGCCR	2 cut(s)	924, 1372
EciI	GGCGGA	8 cut(s)	122, 356, 677, 903, 997, 1193, 1463, 1486
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	8 cut(s)	246, 459, 814, 883, 921, 1119, 1206, 1434
Eco24I	GRGCYC	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	1592
Eco47I	GGWCC	4 cut(s)	278, 463, 748, 1630
Eco53kI	GAGCTC	1 cut(s)	49
Eco72I	CACGTG	1 cut(s)	1083
Eco88I	CYCGRG	2 cut(s)	19, 281
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	3 cut(s)	278, 1087, 1630
EcoRI	GAATTC	1 cut(s)	56
EcoRII	CCWGG	7 cut(s)	96, 163, 435, 542, 657, 750, 1374
EcoT14I	CCWWGG	8 cut(s)	246, 459, 814, 883, 921, 1119, 1206, 1434
EcoT38I	GRGCYC	1 cut(s)	51
EgeI	GGCGCC	3 cut(s)	26, 259, 913
EheI	GGCGCC	3 cut(s)	26, 259, 913
ErhI	CCWWGG	8 cut(s)	246, 459, 814, 883, 921, 1119, 1206, 1434
FaeI	CATG	3 cut(s)	91, 227, 887
FaqI	GGGAC	3 cut(s)	300, 1238, 1643
FatI	CATG	3 cut(s)	87, 223, 883
FauI	CCCGC	1 cut(s)	788
FblI	GTMKAC	1 cut(s)	367
Fnu4HI	GCNGC	7 cut(s)	256, 477, 724, 727, 1243, 1386, 1409
FokI	GGATG	4 cut(s)	709, 776, 813, 1463
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	7 cut(s)	256, 477, 724, 727, 1243, 1386, 1409
FspBI	CTAG	4 cut(s)	425, 872, 1575, 1637
GlaI	GCGC	6 cut(s)	26, 259, 354, 722, 913, 1609
GluI	GCNGC	7 cut(s)	256, 477, 724, 727, 1243, 1386, 1409
GsaI	CCCAGC	1 cut(s)	693
HaeII	RGCGCY	5 cut(s)	28, 261, 356, 915, 1611
HapII	CCGG	8 cut(s)	147, 261, 282, 363, 979, 1480, 1503, 1611
HgaI	GACGC	5 cut(s)	122, 388, 983, 1439, 1603
HhaI	GCGC	6 cut(s)	27, 260, 355, 723, 914, 1610
Hin1I	GRCGYC	6 cut(s)	25, 258, 912, 975, 1431, 1614
Hin1II	CATG	3 cut(s)	91, 227, 887
Hin6I	GCGC	6 cut(s)	25, 258, 353, 721, 912, 1608
HinP1I	GCGC	6 cut(s)	25, 258, 353, 721, 912, 1608
HincII	GTYRAC	5 cut(s)	403, 433, 442, 685, 1618
HindII	GTYRAC	5 cut(s)	403, 433, 442, 685, 1618
HindIII	AAGCTT	3 cut(s)	324, 803, 1454
HinfI	GANTC	9 cut(s)	264, 383, 416, 566, 604, 819, 1072, 1510, 1578
HpaI	GTTAAC	1 cut(s)	433
HpaII	CCGG	8 cut(s)	147, 261, 282, 363, 979, 1480, 1503, 1611
HphI	GGTGA	2 cut(s)	814, 980
Hpy166II	GTNNAC	7 cut(s)	229, 368, 403, 433, 442, 685, 1618
Hpy188I	TCNGA	2 cut(s)	211, 603
Hpy188III	TCNNGA	4 cut(s)	387, 1225, 1460, 1480
Hpy8I	GTNNAC	7 cut(s)	229, 368, 403, 433, 442, 685, 1618
Hpy99I	CGWCG	3 cut(s)	1042, 1430, 1433
HpyAV	CCTTC	3 cut(s)	85, 1228, 1577
HpyCH4III	ACNGT	4 cut(s)	207, 1014, 1050, 1287
HpyCH4IV	ACGT	5 cut(s)	492, 500, 675, 1082, 1137
HpyCH4V	TGCA	5 cut(s)	4, 188, 223, 1019, 1346
HpyF10VI	GCNNNNNNNGC	6 cut(s)	257, 302, 359, 581, 1005, 1352
HpyF3I	CTNAG	6 cut(s)	29, 50, 129, 385, 558, 1332
HpySE526I	ACGT	5 cut(s)	492, 500, 675, 1082, 1137
Hsp92I	GRCGYC	6 cut(s)	25, 258, 912, 975, 1431, 1614
Hsp92II	CATG	3 cut(s)	91, 227, 887
HspAI	GCGC	6 cut(s)	25, 258, 353, 721, 912, 1608
KasI	GGCGCC	3 cut(s)	24, 257, 911
Kpn2I	TCCGGA	1 cut(s)	1479
KroI	GCCGGC	1 cut(s)	1610
KroNI	GCCGGC	1 cut(s)	1612
KspAI	GTTAAC	1 cut(s)	433
Kzo9I	GATC	3 cut(s)	705, 917, 1021
LmnI	GCTCC	2 cut(s)	389, 1180
Lsp1109I	GCAGC	3 cut(s)	735, 1395, 1397
LweI	GCATC	2 cut(s)	175, 1355
MabI	ACCWGGT	1 cut(s)	435
MaeI	CTAG	4 cut(s)	425, 872, 1575, 1637
MaeII	ACGT	5 cut(s)	492, 500, 675, 1082, 1137
MaeIII	GTNAC	2 cut(s)	178, 1558
MalI	GATC	3 cut(s)	707, 919, 1023
MboI	GATC	3 cut(s)	705, 917, 1021
MboII	GAAGA	3 cut(s)	661, 1240, 1652
MflI	RGATCY	2 cut(s)	917, 1021
MhlI	GDGCHC	2 cut(s)	51, 1331
MlsI	TGGCCA	1 cut(s)	926
MluCI	AATT	5 cut(s)	56, 311, 518, 1212, 1669
MluI	ACGCGT	1 cut(s)	303
MluNI	TGGCCA	1 cut(s)	926
Mly113I	GGCGCC	3 cut(s)	25, 258, 912
MlyI	GAGTC	6 cut(s)	273, 377, 410, 613, 1504, 1587
MmeI	TCCRAC	1 cut(s)	1514
Mox20I	TGGCCA	1 cut(s)	926
MreI	CGCCGGCG	1 cut(s)	1610
MroI	TCCGGA	1 cut(s)	1479
MroNI	GCCGGC	1 cut(s)	1610
MroXI	GAANNNNTTC	1 cut(s)	1455
MscI	TGGCCA	1 cut(s)	926
MseI	TTAA	4 cut(s)	272, 432, 1097, 1337
MslI	CAYNNNNRTG	1 cut(s)	620
Msp20I	TGGCCA	1 cut(s)	926
MspA1I	CMGCKG	5 cut(s)	255, 611, 693, 726, 840
MspI	CCGG	8 cut(s)	147, 261, 282, 363, 979, 1480, 1503, 1611
MvaI	CCWGG	7 cut(s)	98, 165, 437, 544, 659, 752, 1376
MvnI	CGCG	2 cut(s)	296, 305
MwoI	GCNNNNNNNGC	6 cut(s)	257, 302, 359, 581, 1005, 1352
NaeI	GCCGGC	1 cut(s)	1612
NarI	GGCGCC	3 cut(s)	25, 258, 912
NciI	CCSGG	4 cut(s)	147, 282, 283, 979
NcoI	CCATGG	1 cut(s)	883
NdeII	GATC	3 cut(s)	705, 917, 1021
NgoMIV	GCCGGC	1 cut(s)	1610
NlaIII	CATG	3 cut(s)	91, 227, 887
NlaIV	GGNNCC	9 cut(s)	26, 218, 259, 280, 913, 1044, 1088, 1182, 1631
NspI	RCATGY	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	620
PasI	CCCWGGG	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	1377
PdiI	GCCGGC	1 cut(s)	1612
PdmI	GAANNNNTTC	1 cut(s)	1455
PfeI	GAWTC	3 cut(s)	566, 819, 1072
PflFI	GACNNNGTC	1 cut(s)	398
PflMI	CCANNNNNTGG	1 cut(s)	103
PkrI	GCNGC	7 cut(s)	257, 478, 725, 728, 1244, 1387, 1410
PleI	GAGTC	6 cut(s)	272, 377, 410, 612, 1504, 1586
PluTI	GGCGCC	3 cut(s)	28, 261, 915
PmaCI	CACGTG	1 cut(s)	1083
PmlI	CACGTG	1 cut(s)	1083
PpsI	GAGTC	6 cut(s)	272, 377, 410, 612, 1504, 1586
Ppu21I	YACGTR	1 cut(s)	1083
PpuMI	RGGWCCY	2 cut(s)	278, 1630
Psp124BI	GAGCTC	1 cut(s)	51
Psp1406I	AACGTT	2 cut(s)	500, 675
Psp5II	RGGWCCY	2 cut(s)	278, 1630
Psp6I	CCWGG	7 cut(s)	96, 163, 435, 542, 657, 750, 1374
PspCI	CACGTG	1 cut(s)	1083
PspFI	CCCAGC	1 cut(s)	689
PspGI	CCWGG	7 cut(s)	96, 163, 435, 542, 657, 750, 1374
PspN4I	GGNNCC	9 cut(s)	26, 218, 259, 280, 913, 1044, 1088, 1182, 1631
PspPPI	RGGWCCY	2 cut(s)	278, 1630
PsrI	GAACNNNNNNTAC	2 cut(s)	284, 316
PstNI	CAGNNNCTG	2 cut(s)	392, 1541
PsuI	RGATCY	2 cut(s)	917, 1021
PsyI	GACNNNGTC	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	693
RsaI	GTAC	6 cut(s)	71, 151, 302, 347, 491, 629
RsaNI	GTAC	6 cut(s)	70, 150, 301, 346, 490, 628
RseI	CAYNNNNRTG	1 cut(s)	620
SacI	GAGCTC	1 cut(s)	51
SaqAI	TTAA	4 cut(s)	272, 432, 1097, 1337
SatI	GCNGC	7 cut(s)	256, 477, 724, 727, 1243, 1386, 1409
Sau3AI	GATC	3 cut(s)	705, 917, 1021
SchI	GAGTC	6 cut(s)	273, 377, 410, 613, 1504, 1587
SduI	GDGCHC	2 cut(s)	51, 1331
SexAI	ACCWGGT	1 cut(s)	435
SfaNI	GCATC	2 cut(s)	175, 1355
SfcI	CTRYAG	1 cut(s)	203
SfoI	GGCGCC	3 cut(s)	26, 259, 913
SgrAI	CRCCGGYG	2 cut(s)	1502, 1610
SinI	GGWCC	4 cut(s)	278, 463, 748, 1630
SmaI	CCCGGG	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
SpeI	ACTAGT	1 cut(s)	424
Sse9I	AATT	5 cut(s)	56, 311, 518, 1212, 1669
SspDI	GGCGCC	3 cut(s)	24, 257, 911
SspMI	CTAG	4 cut(s)	425, 872, 1575, 1637
SstI	GAGCTC	1 cut(s)	51
StyI	CCWWGG	8 cut(s)	246, 459, 814, 883, 921, 1119, 1206, 1434
TaaI	ACNGT	4 cut(s)	207, 1014, 1050, 1287
TaiI	ACGT	5 cut(s)	495, 503, 678, 1085, 1140
TaqI	TCGA	6 cut(s)	60, 989, 1380, 1425, 1530, 1581
TasI	AATT	5 cut(s)	56, 311, 518, 1212, 1669
TatI	WGTACW	1 cut(s)	69
TauI	GCSGC	4 cut(s)	258, 479, 729, 1245
TfiI	GAWTC	3 cut(s)	566, 819, 1072
Tru1I	TTAA	4 cut(s)	272, 432, 1097, 1337
Tru9I	TTAA	4 cut(s)	272, 432, 1097, 1337
TscAI	CASTG	3 cut(s)	108, 576, 1053
TseI	GCWGC	3 cut(s)	723, 1385, 1408
TspDTI	ATGAA	3 cut(s)	103, 104, 1064
TspGWI	ACGGA	2 cut(s)	1055, 1084
TspMI	CCCGGG	1 cut(s)	281
TspRI	CASTG	3 cut(s)	108, 576, 1053
Tth111I	GACNNNGTC	1 cut(s)	398
Van91I	CCANNNNNTGG	1 cut(s)	103
VpaK11BI	GGWCC	4 cut(s)	278, 463, 748, 1630
XapI	RAATTY	3 cut(s)	56, 311, 518
XceI	RCATGY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1467
XmaI	CCCGGG	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	367
XmnI	GAANNNNTTC	1 cut(s)	1455
XspI	CTAG	4 cut(s)	425, 872, 1575, 1637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.