Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011973.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

34394 .. 34873

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011973.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atggcggagtatgaagcacttattgccggcttactcctctccatcgactcaagagctgacagtgtcaacatattcatagactctcaactagtcgttaaccaggtcaacgacagcttgcaggccaaagaccagaagttagtggcatacttgggactagcaaccgctcaaccacaccaaagtccagcggacacaagggtagagtgccttgacaagccaagcatcaccaaaaccctgacggaaatcttcaacattgagatcaatcccaactggatggatgaaatcatagagtacaatcacaatggaacactacccaccgacaaggtcgaggcaaggcagcttaagcggagagcaacccgctataacatcgagaatggcaagctttacctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

129

Amino Acids

14.57

Weight (kDa)

4.95

Isoelectric Point (pI)

64.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	164
AciI	CCGC	5 cut(s)	5, 162, 185, 343, 355
AfaI	GTAC	1 cut(s)	290
AflII	CTTAAG	1 cut(s)	338
AgsI	TTSAA	1 cut(s)	247
AhlI	ACTAGT	1 cut(s)	88
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	4 cut(s)	56, 114, 337, 379
AluI	AGCT	4 cut(s)	56, 114, 337, 379
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	334
AsuHPI	GGTGA	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	2 cut(s)	50, 265
BciT130I	CCWGG	1 cut(s)	101
BcuI	ACTAGT	1 cut(s)	88
BfaI	CTAG	2 cut(s)	89, 155
BfrI	CTTAAG	1 cut(s)	338
BisI	GCNGC	1 cut(s)	335
BlsI	GCNGC	1 cut(s)	336
Bme1390I	CCNGG	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	101
BmsI	GCATC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	34
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	101
BseGI	GGATG	2 cut(s)	276, 280
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	346
BshFI	GGCC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	255
BspACI	CCGC	5 cut(s)	5, 162, 185, 343, 355
BspANI	GGCC	1 cut(s)	122
BspTI	CTTAAG	1 cut(s)	338
BsrBI	CCGCTC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	26
BssMI	GATC	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	62
BstAFI	CTTAAG	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	4 cut(s)	28, 116, 120, 377
BstF5I	GGATG	2 cut(s)	276, 280
BstKTI	GATC	1 cut(s)	258
BstMBI	GATC	1 cut(s)	255
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 340
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	346
BstXI	CCANNNNNNTGG	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	276, 280
BtsIMutI	CAGTG	1 cut(s)	67
Cac8I	GCNNGC	4 cut(s)	28, 116, 120, 377
Cfr10I	RCCGGY	1 cut(s)	26
CsiI	ACCWGGT	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	289
CviJI	RGCY	7 cut(s)	30, 56, 114, 122, 214, 337, 379
CviKI_1	RGCY	7 cut(s)	30, 56, 114, 122, 214, 337, 379
CviQI	GTAC	1 cut(s)	289
DpnI	GATC	1 cut(s)	257
DpnII	GATC	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	99
FaiI	YATR	6 cut(s)	12, 71, 77, 145, 284, 360
FaqI	GGGAC	1 cut(s)	165
FauI	CCCGC	1 cut(s)	362
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	2 cut(s)	283, 287
Fsp4HI	GCNGC	1 cut(s)	335
FspBI	CTAG	2 cut(s)	89, 155
GluI	GCNGC	1 cut(s)	335
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	27
HincII	GTYRAC	3 cut(s)	67, 97, 106
HindII	GTYRAC	3 cut(s)	67, 97, 106
HindIII	AAGCTT	1 cut(s)	377
HinfI	GANTC	2 cut(s)	47, 80
HpaI	GTTAAC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	3 cut(s)	67, 97, 106
Hpy188III	TCNNGA	2 cut(s)	51, 367
Hpy8I	GTNNAC	3 cut(s)	67, 97, 106
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4V	TGCA	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 340
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	255
LpnPI	CCDG	8 cut(s)	40, 86, 104, 113, 143, 195, 245, 253
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	1 cut(s)	228
MabI	ACCWGGT	1 cut(s)	99
MaeI	CTAG	2 cut(s)	89, 155
MalI	GATC	1 cut(s)	257
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	1 cut(s)	255
MboII	GAAGA	1 cut(s)	235
MlyI	GAGTC	2 cut(s)	41, 74
MnlI	CCTC	2 cut(s)	47, 319
MroNI	GCCGGC	1 cut(s)	26
MseI	TTAA	2 cut(s)	96, 339
MspA1I	CMGCKG	1 cut(s)	185
MspCI	CTTAAG	1 cut(s)	338
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	23, 340
NaeI	GCCGGC	1 cut(s)	28
NdeII	GATC	1 cut(s)	255
NgoMIV	GCCGGC	1 cut(s)	26
PdiI	GCCGGC	1 cut(s)	28
PflFI	GACNNNGTC	2 cut(s)	62, 320
PkrI	GCNGC	1 cut(s)	336
PleI	GAGTC	2 cut(s)	41, 74
PpsI	GAGTC	2 cut(s)	41, 74
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PsyI	GACNNNGTC	2 cut(s)	62, 320
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SaqAI	TTAA	2 cut(s)	96, 339
SatI	GCNGC	1 cut(s)	335
Sau3AI	GATC	1 cut(s)	255
SchI	GAGTC	2 cut(s)	41, 74
ScrFI	CCNGG	1 cut(s)	101
SetI	ASST	7 cut(s)	58, 105, 116, 324, 339, 381, 387
SexAI	ACCWGGT	1 cut(s)	99
SfaNI	GCATC	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	49, 338
SmoI	CTYRAG	2 cut(s)	49, 338
SpeI	ACTAGT	1 cut(s)	88
SsiI	CCGC	5 cut(s)	5, 162, 185, 343, 355
SspMI	CTAG	2 cut(s)	89, 155
StyD4I	CCNGG	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	62
TaqI	TCGA	3 cut(s)	45, 324, 366
TatI	WGTACW	1 cut(s)	288
Tru1I	TTAA	2 cut(s)	96, 339
Tru9I	TTAA	2 cut(s)	96, 339
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	27, 64, 291
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	67
Tth111I	GACNNNGTC	2 cut(s)	62, 320
Vha464I	CTTAAG	1 cut(s)	338
XspI	CTAG	2 cut(s)	89, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.