Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015925.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

1922 .. 2832

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015925.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgcaaccaatagtacccggtgtactacgctggaaaaggttatactggcgcagagtcaaggtacccggagggccaggctcagcagatttcatttctgaacttatcccccctcatgatccacctataggaacacctgaaccaccagcccagatcctacaaccaccaagcactaggcgattgtacgttgatggcgcatccaacaggaagacaagtagagccggtattttgctaatcagcccggaggatcaggtctacgagtacggcctcaagtttgctttcaaggcacccaacactgtcgtcagaggtaacttcgaggaaaaagagcttcacatgtcctcttaccaggccctggcacgggcactagttcagagatttacctcttacatcattactcaaatacccagaccacaaaatgacaaagcatatgcccttgctaagctagcagcaacttctccaagtcccgaaaatatttacgatagaccacactacctcctggatggatccgatcttgacggtttggcctcggacgacaaattcgaggctaggaaactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

184

Amino Acids

20.63

Weight (kDa)

9.27

Isoelectric Point (pI)

55.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	61
AccB1I	GGYRCC	2 cut(s)	61, 283
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	252
AclWI	GGATC	5 cut(s)	110, 145, 252, 495, 508
AcsI	RAATTY	1 cut(s)	533
AfaI	GTAC	5 cut(s)	15, 24, 63, 182, 260
AfiI	CCNNNNNNNGG	4 cut(s)	125, 349, 354, 355
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	1 cut(s)	280
AhlI	ACTAGT	1 cut(s)	361
AjnI	CCWGG	4 cut(s)	73, 342, 348, 492
AluBI	AGCT	2 cut(s)	325, 439
AluI	AGCT	2 cut(s)	325, 439
AlwI	GGATC	5 cut(s)	110, 145, 252, 495, 508
AlwNI	CAGNNNCTG	1 cut(s)	349
AoxI	GGCC	4 cut(s)	71, 262, 345, 519
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	1 cut(s)	533
ArsI	GACNNNNNNTTYG	2 cut(s)	518, 550
Asp718I	GGTACC	1 cut(s)	61
AspLEI	GCGC	2 cut(s)	51, 194
AspS9I	GGNCC	2 cut(s)	71, 346
AsuC2I	CCSGG	3 cut(s)	18, 66, 239
AsuNHI	GCTAGC	1 cut(s)	439
BaeGI	GKGCMC	1 cut(s)	361
BamHI	GGATCC	1 cut(s)	500
BanI	GGYRCC	2 cut(s)	61, 283
BbsI	GAAGAC	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	2 cut(s)	182, 491
BceAI	ACGGC	1 cut(s)	277
BciT130I	CCWGG	4 cut(s)	75, 344, 350, 494
BcnI	CCSGG	3 cut(s)	18, 66, 239
BcuI	ACTAGT	1 cut(s)	361
BfaI	CTAG	4 cut(s)	171, 362, 440, 543
BfmI	CTRYAG	1 cut(s)	123
BisI	GCNGC	1 cut(s)	444
BlpI	GCTNAGC	2 cut(s)	79, 435
BlsI	GCNGC	1 cut(s)	445
Bme1390I	CCNGG	7 cut(s)	18, 66, 75, 239, 344, 350, 494
BmgT120I	GGNCC	2 cut(s)	71, 346
BmiI	GGNNCC	3 cut(s)	63, 285, 502
BmrFI	CCNGG	7 cut(s)	18, 66, 75, 239, 344, 350, 494
BmsI	GCATC	1 cut(s)	203
BmtI	GCTAGC	1 cut(s)	443
BpiI	GAAGAC	1 cut(s)	212
Bpu1102I	GCTNAGC	2 cut(s)	79, 435
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	3 cut(s)	18, 66, 239
BsaJI	CCNNGG	2 cut(s)	348, 522
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 349, 354, 355
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	50
BseBI	CCWGG	4 cut(s)	75, 344, 350, 494
BseDI	CCNNGG	2 cut(s)	348, 522
BseGI	GGATG	2 cut(s)	194, 502
BseLI	CCNNNNNNNGG	4 cut(s)	125, 349, 354, 355
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	1 cut(s)	455
BshFI	GGCC	4 cut(s)	73, 264, 347, 521
BshNI	GGYRCC	2 cut(s)	61, 283
BsiSI	CCGG	4 cut(s)	18, 66, 219, 239
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	4 cut(s)	125, 349, 354, 355
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	4 cut(s)	73, 264, 347, 521
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	5 cut(s)	115, 150, 244, 500, 505
Bsp1720I	GCTNAGC	2 cut(s)	79, 435
BspANI	GGCC	4 cut(s)	73, 264, 347, 521
BspCNI	CTCAG	1 cut(s)	92
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	3 cut(s)	63, 285, 502
BspOI	GCTAGC	1 cut(s)	443
BspPI	GGATC	5 cut(s)	110, 145, 252, 495, 508
BspT107I	GGYRCC	2 cut(s)	61, 283
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	348, 522
BssMI	GATC	5 cut(s)	115, 150, 244, 500, 505
Bst2UI	CCWGG	4 cut(s)	75, 344, 350, 494
Bst4CI	ACNGT	2 cut(s)	295, 515
BstC8I	GCNNGC	1 cut(s)	441
BstDEI	CTNAG	2 cut(s)	79, 435
BstF5I	GGATG	2 cut(s)	194, 502
BstHHI	GCGC	2 cut(s)	51, 194
BstKTI	GATC	5 cut(s)	118, 153, 247, 503, 508
BstMBI	GATC	5 cut(s)	115, 150, 244, 500, 505
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 440
BstNI	CCWGG	4 cut(s)	75, 344, 350, 494
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	7 cut(s)	16, 64, 73, 237, 342, 348, 492
BstSFI	CTRYAG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	455
BstV2I	GAAGAC	1 cut(s)	212
BstX2I	RGATCY	2 cut(s)	150, 500
BstYI	RGATCY	2 cut(s)	150, 500
BsuRI	GGCC	4 cut(s)	73, 264, 347, 521
BtsCI	GGATG	2 cut(s)	194, 502
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	1 cut(s)	441
CaiI	CAGNNNCTG	1 cut(s)	349
CciI	TCATGA	1 cut(s)	112
CfoI	GCGC	2 cut(s)	51, 194
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	71, 346
Csp6I	GTAC	5 cut(s)	14, 23, 62, 181, 259
CviAII	CATG	2 cut(s)	113, 331
CviQI	GTAC	5 cut(s)	14, 23, 62, 181, 259
DdeI	CTNAG	2 cut(s)	79, 435
DpnI	GATC	5 cut(s)	117, 152, 246, 502, 507
DpnII	GATC	5 cut(s)	115, 150, 244, 500, 505
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRII	CCWGG	4 cut(s)	73, 342, 348, 492
FaeI	CATG	2 cut(s)	116, 334
FaiI	YATR	6 cut(s)	43, 114, 125, 332, 424, 426
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	2 cut(s)	112, 330
FauNDI	CATATG	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	2 cut(s)	181, 509
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	4 cut(s)	171, 362, 440, 543
GlaI	GCGC	2 cut(s)	50, 193
GluI	GCNGC	1 cut(s)	444
HaeIII	GGCC	4 cut(s)	73, 264, 347, 521
HapII	CCGG	4 cut(s)	18, 66, 219, 239
HhaI	GCGC	2 cut(s)	51, 194
Hin1II	CATG	2 cut(s)	116, 334
Hin6I	GCGC	2 cut(s)	49, 192
HinP1I	GCGC	2 cut(s)	49, 192
HinfI	GANTC	1 cut(s)	54
HpaII	CCGG	4 cut(s)	18, 66, 219, 239
Hpy166II	GTNNAC	2 cut(s)	23, 253
Hpy188I	TCNGA	5 cut(s)	97, 302, 369, 505, 526
Hpy188III	TCNNGA	3 cut(s)	113, 461, 509
Hpy8I	GTNNAC	2 cut(s)	23, 253
HpyCH4III	ACNGT	2 cut(s)	295, 515
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 440
HpyF3I	CTNAG	2 cut(s)	79, 435
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	116, 334
HspAI	GCGC	2 cut(s)	49, 192
KpnI	GGTACC	1 cut(s)	65
Kzo9I	GATC	5 cut(s)	115, 150, 244, 500, 505
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	1 cut(s)	203
MaeI	CTAG	4 cut(s)	171, 362, 440, 543
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	5 cut(s)	117, 152, 246, 502, 507
MboI	GATC	5 cut(s)	115, 150, 244, 500, 505
MboII	GAAGA	1 cut(s)	217
MflI	RGATCY	2 cut(s)	150, 500
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	1 cut(s)	533
MlyI	GAGTC	1 cut(s)	63
MmeI	TCCRAC	1 cut(s)	222
MspI	CCGG	4 cut(s)	18, 66, 219, 239
MspR9I	CCNGG	7 cut(s)	18, 66, 75, 239, 344, 350, 494
MvaI	CCWGG	4 cut(s)	75, 344, 350, 494
MwoI	GCNNNNNNNGC	2 cut(s)	281, 440
NciI	CCSGG	3 cut(s)	18, 66, 239
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	5 cut(s)	115, 150, 244, 500, 505
NheI	GCTAGC	1 cut(s)	439
NlaIII	CATG	2 cut(s)	116, 334
NlaIV	GGNNCC	3 cut(s)	63, 285, 502
NspI	RCATGY	1 cut(s)	334
PagI	TCATGA	1 cut(s)	112
PciI	ACATGT	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	534
PflMI	CCANNNNNTGG	1 cut(s)	349
PfoI	TCCNGGA	1 cut(s)	492
PkrI	GCNGC	1 cut(s)	445
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PscI	ACATGT	1 cut(s)	330
Psp6I	CCWGG	4 cut(s)	73, 342, 348, 492
PspGI	CCWGG	4 cut(s)	73, 342, 348, 492
PspN4I	GGNNCC	3 cut(s)	63, 285, 502
PspPI	GGNCC	2 cut(s)	71, 346
PstNI	CAGNNNCTG	1 cut(s)	349
PsuI	RGATCY	2 cut(s)	150, 500
RsaI	GTAC	5 cut(s)	15, 24, 63, 182, 260
RsaNI	GTAC	5 cut(s)	14, 23, 62, 181, 259
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	5 cut(s)	115, 150, 244, 500, 505
Sau96I	GGNCC	2 cut(s)	71, 346
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	7 cut(s)	18, 66, 75, 239, 344, 350, 494
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	1 cut(s)	203
SfcI	CTRYAG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SpeI	ACTAGT	1 cut(s)	361
Sse9I	AATT	1 cut(s)	533
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	4 cut(s)	171, 362, 440, 543
StyD4I	CCNGG	7 cut(s)	16, 64, 73, 237, 342, 348, 492
TaaI	ACNGT	2 cut(s)	295, 515
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	312, 537
TasI	AATT	1 cut(s)	533
TatI	WGTACW	1 cut(s)	22
TscAI	CASTG	1 cut(s)	298
TseI	GCWGC	1 cut(s)	443
TspDTI	ATGAA	1 cut(s)	79
TspRI	CASTG	1 cut(s)	298
Van91I	CCANNNNNTGG	1 cut(s)	349
XapI	RAATTY	1 cut(s)	533
XceI	RCATGY	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	4 cut(s)	171, 362, 440, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.