Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

19169848 .. 19170309

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15484.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAAGGCCGAGAGGGCGTTGCCCGAGCGATAATAGAATTTATCGTTGTGGATTGTAAGTCGTCCTACAACGGGATCTTGGGAAGGCCGGTATTGTGGAAACTAAAGTCGTTTGTTGCTAGTCACATGTTGATGATGAAGCTCCCAACCCCAACGGGAATCATTACGATCCAGGGAGATCAAGGGGCGTCAAGGAGTTGTTGTGCGATAGACAACGGGAGGAAAATGTCAGAGGTTCTATCGGCCAGTCAGGCCGCAACATCCCCCTTGGATCCTTACATAGATCCCAAAGATGATACCGACTCGGATGAGGAGCGTCCGGGACCAGCGGAGGAAACAGAAGTGGTGTCAGTTTCAGATGAGTTCCCGGATCGGCAGGTGACCATCGGGTCGGGGCAGGCACCCGGTGTGCGAACGGCCCTTGTAGACTTCTTGAAGAGAAACAGTGGAGCATTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

154

Amino Acids

16.45

Weight (kDa)

4.79

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	367
AasI	GACNNNNNNGTC	1 cut(s)	388
Acc36I	ACCTGC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	400
AccI	GTMKAC	1 cut(s)	426
AciI	CCGC	2 cut(s)	255, 329
AclWI	GGATC	6 cut(s)	83, 163, 266, 278, 279, 378
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	188
AdeI	CACNNNGTG	1 cut(s)	407
AfiI	CCNNNNNNNGG	1 cut(s)	72
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
AlwI	GGATC	6 cut(s)	83, 163, 266, 278, 279, 378
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	5 cut(s)	7, 86, 243, 252, 417
ApoI	RAATTY	1 cut(s)	38
AspS9I	GGNCC	2 cut(s)	323, 418
AsuC2I	CCSGG	3 cut(s)	321, 368, 405
AsuHPI	GGTGA	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	323
BamHI	GGATCC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	400
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	1 cut(s)	432
BciT130I	CCWGG	1 cut(s)	173
BcnI	CCSGG	3 cut(s)	321, 368, 405
BfaI	CTAG	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	367
BglI	GCCNNNNNGGC	2 cut(s)	15, 251
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	4 cut(s)	173, 321, 368, 405
Bme18I	GGWCC	1 cut(s)	323
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	2 cut(s)	323, 418
BmiI	GGNNCC	3 cut(s)	273, 324, 402
BmrFI	CCNGG	4 cut(s)	173, 321, 368, 405
BpuMI	CCSGG	3 cut(s)	321, 368, 405
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	172, 267
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	172, 267
BseGI	GGATG	2 cut(s)	260, 313
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	326
BshFI	GGCC	5 cut(s)	9, 88, 245, 254, 419
BshNI	GGYRCC	1 cut(s)	400
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	4 cut(s)	89, 320, 368, 405
BslFI	GGGAC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	336
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	5 cut(s)	9, 88, 245, 254, 419
BsoBI	CYCGRG	1 cut(s)	24
Bsp143I	GATC	6 cut(s)	75, 168, 178, 271, 283, 370
BspACI	CCGC	2 cut(s)	255, 329
BspANI	GGCC	5 cut(s)	9, 88, 245, 254, 419
BspLI	GGNNCC	3 cut(s)	273, 324, 402
BspMI	ACCTGC	1 cut(s)	367
BspPI	GGATC	6 cut(s)	83, 163, 266, 278, 279, 378
BspT107I	GGYRCC	1 cut(s)	400
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	246
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	172, 267
BssMI	GATC	6 cut(s)	75, 168, 178, 271, 283, 370
BssNI	GRCGYC	1 cut(s)	188
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	446
Bst6I	CTCTTC	1 cut(s)	431
BstACI	GRCGYC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	399
BstEII	GGTNACC	1 cut(s)	379
BstF5I	GGATG	2 cut(s)	260, 313
BstKTI	GATC	6 cut(s)	78, 171, 181, 274, 286, 373
BstMBI	GATC	6 cut(s)	75, 168, 178, 271, 283, 370
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 251
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	130
BstPI	GGTNACC	1 cut(s)	379
BstSCI	CCNGG	4 cut(s)	171, 319, 366, 403
BstX2I	RGATCY	3 cut(s)	75, 271, 283
BstYI	RGATCY	3 cut(s)	75, 271, 283
BsuRI	GGCC	5 cut(s)	9, 88, 245, 254, 419
BtsCI	GGATG	2 cut(s)	260, 313
BtsIMutI	CAGTG	1 cut(s)	451
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	399
Cfr10I	RCCGGY	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	323, 418
CseI	GACGC	2 cut(s)	177, 305
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	6 cut(s)	9, 88, 142, 245, 254, 419
CviKI_1	RGCY	6 cut(s)	9, 88, 142, 245, 254, 419
DpnI	GATC	6 cut(s)	77, 170, 180, 273, 285, 372
DpnII	GATC	6 cut(s)	75, 168, 178, 271, 283, 370
DraIII	CACNNNGTG	1 cut(s)	407
DrdI	GACNNNNNNGTC	1 cut(s)	388
DseDI	GACNNNNNNGTC	1 cut(s)	388
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
Eco130I	CCWWGG	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	24
Eco91I	GGTNACC	1 cut(s)	379
EcoO65I	GGTNACC	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	1 cut(s)	130
FaiI	YATR	2 cut(s)	128, 281
FaqI	GGGAC	1 cut(s)	336
FatI	CATG	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	2 cut(s)	247, 320
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	120
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	5 cut(s)	9, 88, 245, 254, 419
HapII	CCGG	4 cut(s)	89, 320, 368, 405
HgaI	GACGC	2 cut(s)	177, 305
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	130
HinfI	GANTC	2 cut(s)	159, 302
HpaII	CCGG	4 cut(s)	89, 320, 368, 405
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	3 cut(s)	232, 307, 358
Hpy188III	TCNNGA	1 cut(s)	433
Hpy8I	GTNNAC	1 cut(s)	427
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	1 cut(s)	446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 251
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	1 cut(s)	130
Kzo9I	GATC	6 cut(s)	75, 168, 178, 271, 283, 370
LmnI	GCTCC	3 cut(s)	147, 313, 449
MaeI	CTAG	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	122, 379
MalI	GATC	6 cut(s)	77, 170, 180, 273, 285, 372
MboI	GATC	6 cut(s)	75, 168, 178, 271, 283, 370
MboII	GAAGA	1 cut(s)	448
MflI	RGATCY	3 cut(s)	75, 271, 283
MluCI	AATT	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	296
MnlI	CCTC	5 cut(s)	7, 213, 226, 304, 325
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	4 cut(s)	89, 320, 368, 405
MspR9I	CCNGG	4 cut(s)	173, 321, 368, 405
Mva1269I	GAATGC	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	15, 251
NciI	CCSGG	3 cut(s)	321, 368, 405
NdeII	GATC	6 cut(s)	75, 168, 178, 271, 283, 370
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	3 cut(s)	273, 324, 402
NmeAIII	GCCGAG	1 cut(s)	35
NmuCI	GTSAC	2 cut(s)	122, 379
NspI	RCATGY	1 cut(s)	130
PaqCI	CACCTGC	1 cut(s)	367
PciI	ACATGT	1 cut(s)	126
PctI	GAATGC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	159
PfoI	TCCNGGA	2 cut(s)	319, 366
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PscI	ACATGT	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	171
PspEI	GGTNACC	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	3 cut(s)	273, 324, 402
PspPI	GGNCC	2 cut(s)	323, 418
PsuI	RGATCY	3 cut(s)	75, 271, 283
RseI	CAYNNNNRTG	1 cut(s)	131
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	6 cut(s)	75, 168, 178, 271, 283, 370
Sau96I	GGNCC	2 cut(s)	323, 418
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	4 cut(s)	173, 321, 368, 405
SetI	ASST	3 cut(s)	144, 237, 381
SfiI	GGCCNNNNNGGCC	1 cut(s)	251
SinI	GGWCC	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	2 cut(s)	255, 329
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	4 cut(s)	171, 319, 366, 403
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	446
TasI	AATT	1 cut(s)	38
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	1 cut(s)	159
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	2 cut(s)	122, 379
Tsp45I	GTSAC	2 cut(s)	122, 379
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	1 cut(s)	38
XceI	RCATGY	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	426
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.