Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

57179854 .. 57181257

Gene Structure 1404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G033550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGTATCCCCAACCTACCGGAACGAGGTCCAATCTCTTACAGGCAAGGTGGCCGCCCTGTCAAGATTCATCTCCAGGCTGACGGACAAGTGTACTCCTTTCTTCAAATTGCTAAAAACCCAACACGTCGAGGTAATAGCCTGGACAGCCGAGCACGAGGCTGCTTTTCTTGGCTTGAAGGCATACTTGTCAGAGGTACCTCTACTCTACAAACCTGTTCCAGGAGAAATGCTCTACATATATCTGGCGGCATCTTCAACAGCTGTGAGCTCAGCTCTGATTAGGAAGGACTCCGATTGCGAGTACCCAGTGTACTATGCTGGAAAAGGTTACACTGGTGCAGAATCCAGGTACCCGGACATTGAAAAAATGGCACTGGCCCTCCTGGTATCGGCCCGGAAGCTTAGACATTACTTCCAAGCACACTCAATCACCGTTTTCACTAATCACCCATTGAGGCAGGTTTTGCAGAAACCAGAGACATCGGGCAGGTTAATTAAATGGGCCATCGAGCTGGGGGAGTTTGATATCAAGTACCAGCCCCGGACAGCTATTAAGGGCCAGGCAGCGGCAGATTTGATTTCCGAGTCAATTCCCTCCCATAACCCACCCCTGGAATCACCTGAACCACCAGCCCCAGATCCACCTCCGCCAAGCACTTGGCGATTATACGTTGATGGCTCGTCCAACAAGAAAACCAGTGGAGCTGGTATCCTGCTAATTAGCCCGGACGATCAGGTCTACGAGTACGCCCTCAAATTTGCCTTCAAGGCATCCCACAATGCTGCAGAGTACGAGGCACTCATAGCAGGTCTACAGATCGCCCGGGAACTAGGCGTGCAGCACCTTACTATCTTCAGTGATTCTCAGTTAGTCGTAAACCAGGTCAGCGGTAACTTAGAGGCAAAGGAGCCCCACATGTCCTCTTACCAGGCCTTAGCCCGGGCATTAGTTCAGAGATTTACCTCCTACATTTTTACCCAAATACCGAGGGCAGAAAACGACAAGGCAGATGCCCTTGCTAAGCTTGCATCAACTTCTCCAAGTCCTACCTATGGGGCCACTAAGGTCGAAATACTTGAAAGACCTAGCACTTCTAAAACGGTGTCAGAAATATTTACGGTGAATCACACAGCTTCATGGATGGACCCAATTTTGAAATACATGGTCGATGGCCTAGCACCGGACGATAAGGTCGAGGCCAGAAGACTACAGTTACGGTCAGCTCGATACACGATCATGAATGGCAAATTGTACAGAAGAGGCCACAGCTTTCCCAATCTGAAGTGTGTAACACCGGAGGAAGGTCACACAATAATGAAGGACATACACGCTGGTGTATGCGGTAACCATGCCGGAGCCCGATCTCTTGCACATAAGACCCTAAGGGCAGGATATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

467

Amino Acids

51.74

Weight (kDa)

8.94

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	48 - 146	3e-18	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	77 - 175	2e-18	RNase H-like domain found in reverse transcriptase
RNase_H	PF00075	222 - 302	8.9e-08	RNase H
RVT_3	PF13456	225 - 344	2.6e-22	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	737, 1193
Acc36I	ACCTGC	3 cut(s)	451, 480, 800
Acc65I	GGTACC	2 cut(s)	196, 351
AccB1I	GGYRCC	2 cut(s)	196, 351
AccI	GTMKAC	2 cut(s)	741, 814
AciI	CCGC	6 cut(s)	54, 248, 569, 650, 891, 1344
AclWI	GGATC	1 cut(s)	635
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	758
AcuI	CTGAAG	2 cut(s)	841, 1304
AfaI	GTAC	9 cut(s)	94, 198, 305, 314, 353, 536, 749, 794, 1256
AfiI	CCNNNNNNNGG	9 cut(s)	25, 221, 391, 568, 613, 942, 1055, 1183, 1304
AflIII	ACRYGT	2 cut(s)	124, 918
AgsI	TTSAA	7 cut(s)	106, 178, 258, 365, 769, 1082, 1159
AjiI	CACGTC	1 cut(s)	127
AjnI	CCWGG	9 cut(s)	74, 140, 220, 347, 384, 561, 612, 882, 930
AleI	CACNNNNGTG	1 cut(s)	1335
Alw21I	GWGCWC	2 cut(s)	156, 272
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	635
Ama87I	CYCGRG	2 cut(s)	825, 942
ApeKI	GCWGC	4 cut(s)	161, 566, 785, 841
ApoI	RAATTY	1 cut(s)	758
Asp718I	GGTACC	2 cut(s)	196, 351
AspS9I	GGNCC	7 cut(s)	28, 379, 394, 504, 559, 1059, 1147
AsuC2I	CCSGG	8 cut(s)	356, 397, 544, 728, 826, 827, 943, 944
AsuHPI	GGTGA	4 cut(s)	424, 440, 612, 1135
AvaI	CYCGRG	2 cut(s)	825, 942
AvaII	GGWCC	2 cut(s)	28, 1147
AxyI	CCTNAGG	1 cut(s)	1385
BanI	GGYRCC	2 cut(s)	196, 351
BanII	GRGCYC	3 cut(s)	272, 915, 1363
BauI	CACGAG	1 cut(s)	155
BbsI	GAAGAC	1 cut(s)	1213
Bbv12I	GWGCWC	2 cut(s)	156, 272
BbvI	GCAGC	4 cut(s)	148, 578, 772, 853
BccI	CCATC	4 cut(s)	515, 671, 1138, 1166
BciT130I	CCWGG	9 cut(s)	76, 142, 222, 349, 386, 563, 614, 884, 932
BciVI	GTATCC	2 cut(s)	16, 722
BcnI	CCSGG	8 cut(s)	356, 397, 544, 728, 826, 827, 943, 944
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	4 cut(s)	833, 1089, 1178, 1402
BfmI	CTRYAG	3 cut(s)	786, 815, 1211
BfuAI	ACCTGC	3 cut(s)	451, 480, 800
BfuI	GTATCC	2 cut(s)	16, 722
BglI	GCCNNNNNGGC	1 cut(s)	770
BisI	GCNGC	7 cut(s)	54, 162, 249, 567, 570, 786, 842
BlpI	GCTNAGC	2 cut(s)	271, 1023
BlsI	GCNGC	7 cut(s)	55, 163, 250, 568, 571, 787, 843
Bme18I	GGWCC	2 cut(s)	28, 1147
BmeT110I	CYCGRG	2 cut(s)	825, 942
BmgBI	CACGTC	1 cut(s)	127
BmgT120I	GGNCC	7 cut(s)	28, 379, 394, 504, 559, 1059, 1147
BmiI	GGNNCC	6 cut(s)	198, 353, 912, 1060, 1149, 1360
BmrI	ACTGGG	1 cut(s)	302
BmsI	GCATC	4 cut(s)	260, 782, 1003, 1040
BmuI	ACTGGG	1 cut(s)	302
BpiI	GAAGAC	1 cut(s)	1213
BplI	GAGNNNNNCTC	4 cut(s)	216, 248, 259, 291
BpmI	CTGGAG	1 cut(s)	58
Bpu10I	CCTNAGC	1 cut(s)	937
Bpu1102I	GCTNAGC	2 cut(s)	271, 1023
BpuMI	CCSGG	8 cut(s)	356, 397, 544, 728, 826, 827, 943, 944
BsaJI	CCNNGG	5 cut(s)	542, 612, 825, 942, 989
BsaWI	WCCGGW	3 cut(s)	18, 1183, 1297
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	9 cut(s)	25, 221, 391, 568, 613, 942, 1055, 1183, 1304
Bse1I	ACTGG	4 cut(s)	308, 340, 381, 699
Bse21I	CCTNAGG	1 cut(s)	1385
BseBI	CCWGG	9 cut(s)	76, 142, 222, 349, 386, 563, 614, 884, 932
BseDI	CCNNGG	5 cut(s)	542, 612, 825, 942, 989
BseGI	GGATG	2 cut(s)	773, 1149
BseLI	CCNNNNNNNGG	9 cut(s)	25, 221, 391, 568, 613, 942, 1055, 1183, 1304
BseMII	CTCAG	2 cut(s)	285, 881
BseNI	ACTGG	4 cut(s)	308, 340, 381, 699
BseXI	GCAGC	4 cut(s)	148, 578, 772, 853
BseYI	CCCAGC	1 cut(s)	514
BsgI	GTGCAG	2 cut(s)	360, 860
BshNI	GGYRCC	2 cut(s)	196, 351
BsiHKAI	GWGCWC	2 cut(s)	156, 272
BsiHKCI	CYCGRG	2 cut(s)	825, 942
BslI	CCNNNNNNNGG	9 cut(s)	25, 221, 391, 568, 613, 942, 1055, 1183, 1304
BsmAI	GTCTC	1 cut(s)	473
BsoBI	CYCGRG	2 cut(s)	825, 942
Bsp1286I	GDGCHC	4 cut(s)	156, 272, 915, 1363
Bsp1407I	TGTACA	1 cut(s)	1254
Bsp143I	GATC	5 cut(s)	640, 733, 819, 1236, 1364
Bsp1720I	GCTNAGC	2 cut(s)	271, 1023
BspACI	CCGC	6 cut(s)	54, 248, 569, 650, 891, 1344
BspCNI	CTCAG	2 cut(s)	284, 880
BspHI	TCATGA	1 cut(s)	1239
BspLI	GGNNCC	6 cut(s)	198, 353, 912, 1060, 1149, 1360
BspMAI	CTGCAG	1 cut(s)	790
BspMI	ACCTGC	3 cut(s)	451, 480, 800
BspPI	GGATC	1 cut(s)	635
BspT107I	GGYRCC	2 cut(s)	196, 351
BsrGI	TGTACA	1 cut(s)	1254
BsrI	ACTGG	4 cut(s)	308, 340, 381, 699
BssECI	CCNNGG	5 cut(s)	542, 612, 825, 942, 989
BssMI	GATC	5 cut(s)	640, 733, 819, 1236, 1364
BssSI	CACGAG	1 cut(s)	155
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	9 cut(s)	76, 142, 222, 349, 386, 563, 614, 884, 932
Bst4CI	ACNGT	5 cut(s)	436, 1105, 1123, 1215, 1221
Bst6I	CTCTTC	1 cut(s)	1255
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstAUI	TGTACA	1 cut(s)	1254
BstC8I	GCNNGC	2 cut(s)	839, 1029
BstDEI	CTNAG	8 cut(s)	271, 404, 867, 898, 937, 1023, 1065, 1385
BstEII	GGTNACC	1 cut(s)	1346
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	773, 1149
BstKTI	GATC	5 cut(s)	643, 736, 822, 1239, 1367
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	5 cut(s)	640, 733, 819, 1236, 1364
BstMWI	GCNNNNNNNGC	5 cut(s)	146, 466, 770, 806, 1028
BstNI	CCWGG	9 cut(s)	76, 142, 222, 349, 386, 563, 614, 884, 932
BstNSI	RCATGY	1 cut(s)	922
BstPI	GGTNACC	1 cut(s)	1346
BstSFI	CTRYAG	3 cut(s)	786, 815, 1211
BstV1I	GCAGC	4 cut(s)	148, 578, 772, 853
BstV2I	GAAGAC	1 cut(s)	1213
BstX2I	RGATCY	1 cut(s)	640
BstXI	CCANNNNNNTGG	2 cut(s)	514, 660
BstYI	RGATCY	1 cut(s)	640
Bsu36I	CCTNAGG	1 cut(s)	1385
BsuI	GTATCC	2 cut(s)	16, 722
BtrI	CACGTC	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	773, 1149
BtsIMutI	CAGTG	5 cut(s)	315, 333, 374, 706, 865
BveI	ACCTGC	3 cut(s)	451, 480, 800
Cac8I	GCNNGC	2 cut(s)	839, 1029
CciI	TCATGA	1 cut(s)	1239
Cfr13I	GGNCC	7 cut(s)	28, 379, 394, 504, 559, 1059, 1147
Cfr9I	CCCGGG	2 cut(s)	825, 942
CsiI	ACCWGGT	1 cut(s)	882
Csp6I	GTAC	9 cut(s)	93, 197, 304, 313, 352, 535, 748, 793, 1255
CviAII	CATG	5 cut(s)	919, 1140, 1165, 1240, 1352
CviQI	GTAC	9 cut(s)	93, 197, 304, 313, 352, 535, 748, 793, 1255
DdeI	CTNAG	8 cut(s)	271, 404, 867, 898, 937, 1023, 1065, 1385
DpnI	GATC	5 cut(s)	642, 735, 821, 1238, 1366
DpnII	GATC	5 cut(s)	640, 733, 819, 1236, 1364
DrdI	GACNNNNNNGTC	2 cut(s)	737, 1193
DseDI	GACNNNNNNGTC	2 cut(s)	737, 1193
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	1255
EarI	CTCTTC	1 cut(s)	1255
EciI	GGCGGA	1 cut(s)	639
Ecl136II	GAGCTC	1 cut(s)	270
Eco147I	AGGCCT	1 cut(s)	935
Eco24I	GRGCYC	3 cut(s)	272, 915, 1363
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	2 cut(s)	28, 1147
Eco53kI	GAGCTC	1 cut(s)	270
Eco57I	CTGAAG	2 cut(s)	841, 1304
Eco81I	CCTNAGG	1 cut(s)	1385
Eco88I	CYCGRG	2 cut(s)	825, 942
Eco91I	GGTNACC	1 cut(s)	1346
EcoICRI	GAGCTC	1 cut(s)	270
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoO65I	GGTNACC	1 cut(s)	1346
EcoRII	CCWGG	9 cut(s)	74, 140, 220, 347, 384, 561, 612, 882, 930
EcoRV	GATATC	1 cut(s)	529
EcoT38I	GRGCYC	3 cut(s)	272, 915, 1363
FaeI	CATG	5 cut(s)	922, 1143, 1168, 1243, 1355
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FatI	CATG	5 cut(s)	918, 1139, 1164, 1239, 1351
FblI	GTMKAC	2 cut(s)	741, 814
Fnu4HI	GCNGC	7 cut(s)	54, 162, 249, 567, 570, 786, 842
FokI	GGATG	2 cut(s)	760, 1156
FriOI	GRGCYC	3 cut(s)	272, 915, 1363
Fsp4HI	GCNGC	7 cut(s)	54, 162, 249, 567, 570, 786, 842
FspBI	CTAG	4 cut(s)	833, 1089, 1178, 1402
GluI	GCNGC	7 cut(s)	54, 162, 249, 567, 570, 786, 842
GsaI	CCCAGC	1 cut(s)	518
GsuI	CTGGAG	1 cut(s)	58
Hin1II	CATG	5 cut(s)	922, 1143, 1168, 1243, 1355
HindIII	AAGCTT	2 cut(s)	401, 1025
HinfI	GANTC	7 cut(s)	66, 290, 344, 587, 617, 863, 1126
HphI	GGTGA	4 cut(s)	424, 440, 612, 1135
Hpy166II	GTNNAC	5 cut(s)	93, 313, 742, 815, 880
Hpy188I	TCNGA	7 cut(s)	193, 279, 295, 586, 957, 1111, 1284
Hpy188III	TCNNGA	2 cut(s)	63, 1240
Hpy8I	GTNNAC	5 cut(s)	93, 313, 742, 815, 880
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	5 cut(s)	172, 280, 775, 1298, 1315
HpyCH4III	ACNGT	5 cut(s)	436, 1105, 1123, 1215, 1221
HpyCH4IV	ACGT	2 cut(s)	126, 672
HpyCH4V	TGCA	6 cut(s)	341, 469, 788, 841, 1031, 1373
HpyF10VI	GCNNNNNNNGC	5 cut(s)	146, 466, 770, 806, 1028
HpyF3I	CTNAG	8 cut(s)	271, 404, 867, 898, 937, 1023, 1065, 1385
HpySE526I	ACGT	2 cut(s)	126, 672
Hsp92II	CATG	5 cut(s)	922, 1143, 1168, 1243, 1355
KpnI	GGTACC	2 cut(s)	200, 355
Kzo9I	GATC	5 cut(s)	640, 733, 819, 1236, 1364
LmnI	GCTCC	3 cut(s)	704, 910, 1358
Lsp1109I	GCAGC	4 cut(s)	148, 578, 772, 853
LweI	GCATC	4 cut(s)	260, 782, 1003, 1040
MabI	ACCWGGT	1 cut(s)	882
MaeI	CTAG	4 cut(s)	833, 1089, 1178, 1402
MaeII	ACGT	2 cut(s)	126, 672
MaeIII	GTNAC	6 cut(s)	329, 893, 1215, 1291, 1307, 1346
MalI	GATC	5 cut(s)	642, 735, 821, 1238, 1366
MboI	GATC	5 cut(s)	640, 733, 819, 1236, 1364
MboII	GAAGA	5 cut(s)	94, 246, 847, 1218, 1272
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	4 cut(s)	156, 272, 915, 1363
MluCI	AATT	7 cut(s)	107, 495, 591, 720, 758, 1152, 1250
MlyI	GAGTC	2 cut(s)	284, 596
MmeI	TCCRAC	1 cut(s)	711
MseI	TTAA	3 cut(s)	494, 498, 555
MslI	CAYNNNNRTG	3 cut(s)	1238, 1316, 1335
MspA1I	CMGCKG	3 cut(s)	263, 569, 891
MvaI	CCWGG	9 cut(s)	76, 142, 222, 349, 386, 563, 614, 884, 932
MwoI	GCNNNNNNNGC	5 cut(s)	146, 466, 770, 806, 1028
NciI	CCSGG	8 cut(s)	356, 397, 544, 728, 826, 827, 943, 944
NdeII	GATC	5 cut(s)	640, 733, 819, 1236, 1364
NlaIII	CATG	5 cut(s)	922, 1143, 1168, 1243, 1355
NlaIV	GGNNCC	6 cut(s)	198, 353, 912, 1060, 1149, 1360
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	1307
NspI	RCATGY	1 cut(s)	922
OliI	CACNNNNGTG	1 cut(s)	1335
PacI	TTAATTAA	1 cut(s)	498
PagI	TCATGA	1 cut(s)	1239
PceI	AGGCCT	1 cut(s)	935
PciI	ACATGT	1 cut(s)	918
PcsI	WCGNNNNNNNCGW	2 cut(s)	1194, 1225
PfeI	GAWTC	5 cut(s)	66, 344, 617, 863, 1126
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	7 cut(s)	55, 163, 250, 568, 571, 787, 843
PleI	GAGTC	2 cut(s)	284, 595
PpsI	GAGTC	2 cut(s)	284, 595
PscI	ACATGT	1 cut(s)	918
Psp124BI	GAGCTC	1 cut(s)	272
Psp6I	CCWGG	9 cut(s)	74, 140, 220, 347, 384, 561, 612, 882, 930
PspEI	GGTNACC	1 cut(s)	1346
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	9 cut(s)	74, 140, 220, 347, 384, 561, 612, 882, 930
PspN4I	GGNNCC	6 cut(s)	198, 353, 912, 1060, 1149, 1360
PspPI	GGNCC	7 cut(s)	28, 379, 394, 504, 559, 1059, 1147
PstI	CTGCAG	1 cut(s)	790
PsuI	RGATCY	1 cut(s)	640
PvuII	CAGCTG	1 cut(s)	263
RsaI	GTAC	9 cut(s)	94, 198, 305, 314, 353, 536, 749, 794, 1256
RsaNI	GTAC	9 cut(s)	93, 197, 304, 313, 352, 535, 748, 793, 1255
RseI	CAYNNNNRTG	3 cut(s)	1238, 1316, 1335
SacI	GAGCTC	1 cut(s)	272
SaqAI	TTAA	3 cut(s)	494, 498, 555
SatI	GCNGC	7 cut(s)	54, 162, 249, 567, 570, 786, 842
Sau3AI	GATC	5 cut(s)	640, 733, 819, 1236, 1364
Sau96I	GGNCC	7 cut(s)	28, 379, 394, 504, 559, 1059, 1147
SchI	GAGTC	2 cut(s)	284, 596
SduI	GDGCHC	4 cut(s)	156, 272, 915, 1363
SexAI	ACCWGGT	1 cut(s)	882
SfaNI	GCATC	4 cut(s)	260, 782, 1003, 1040
SfcI	CTRYAG	3 cut(s)	786, 815, 1211
SinI	GGWCC	2 cut(s)	28, 1147
SmaI	CCCGGG	2 cut(s)	827, 944
SmiMI	CAYNNNNRTG	3 cut(s)	1238, 1316, 1335
SrfI	GCCCGGGC	1 cut(s)	944
Sse9I	AATT	7 cut(s)	107, 495, 591, 720, 758, 1152, 1250
SseBI	AGGCCT	1 cut(s)	935
SsiI	CCGC	6 cut(s)	54, 248, 569, 650, 891, 1344
SspI	AATATT	1 cut(s)	1116
SspMI	CTAG	4 cut(s)	833, 1089, 1178, 1402
SstI	GAGCTC	1 cut(s)	272
StuI	AGGCCT	1 cut(s)	935
TaaI	ACNGT	5 cut(s)	436, 1105, 1123, 1215, 1221
TaiI	ACGT	2 cut(s)	129, 675
TaqI	TCGA	6 cut(s)	129, 510, 1071, 1170, 1197, 1228
TasI	AATT	7 cut(s)	107, 495, 591, 720, 758, 1152, 1250
TatI	WGTACW	3 cut(s)	92, 312, 1254
TauI	GCSGC	3 cut(s)	56, 251, 572
TfiI	GAWTC	5 cut(s)	66, 344, 617, 863, 1126
Tru1I	TTAA	3 cut(s)	494, 498, 555
Tru9I	TTAA	3 cut(s)	494, 498, 555
TscAI	CASTG	5 cut(s)	315, 340, 381, 706, 865
TseFI	GTSAC	1 cut(s)	1307
TseI	GCWGC	4 cut(s)	161, 566, 785, 841
Tsp45I	GTSAC	1 cut(s)	1307
TspDTI	ATGAA	4 cut(s)	58, 1128, 1256, 1334
TspGWI	ACGGA	1 cut(s)	98
TspMI	CCCGGG	2 cut(s)	825, 942
TspRI	CASTG	5 cut(s)	315, 340, 381, 706, 865
VpaK11BI	GGWCC	2 cut(s)	28, 1147
XagI	CCTNNNNNAGG	1 cut(s)	219
XapI	RAATTY	1 cut(s)	758
XceI	RCATGY	1 cut(s)	922
XmaI	CCCGGG	2 cut(s)	825, 942
XmiI	GTMKAC	2 cut(s)	741, 814
XspI	CTAG	4 cut(s)	833, 1089, 1178, 1402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.