Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

27388976 .. 27389299

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g37242.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTTATTCCTGTACTTAGCAGCGTCCGACACGGCAGTAAGTTCAGCCTTGATCAGGAAAGACGATGCCATCGAGCTTCCGGTGTATTATATGGGAAAGGGTTTCACCTTGGCAGAGAATAGGTATCCGGGCATCGAGAAGTTGGCCCTGGTGCTCATCGTTACTGCTCGGAAGCTAAGACATTACTTTCAATCACATTCCATCACCTTGTACACCAATTGCCCGCTCCGGCAGGTTTTGCAGAAACCGGAGACGAGCGGGAGGCTCGCCAAATTGGCGATCGAGTTAAGTGAGTTTGACATACACACTACATGCCGAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

108

Amino Acids

12.08

Weight (kDa)

8.98

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	2 - 69	3e-09	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	3 - 99	1.2e-15	RNase H-like domain found in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	223
AccBSI	CCGCTC	2 cut(s)	226, 258
AciI	CCGC	2 cut(s)	224, 258
AfaI	GTAC	2 cut(s)	14, 212
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	2 cut(s)	76, 175
AluI	AGCT	2 cut(s)	76, 175
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	145
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	97, 196
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	2 cut(s)	77, 209
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	149
BciVI	GTATCC	1 cut(s)	135
BclI	TGATCA	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	245
BfuAI	ACCTGC	1 cut(s)	223
BfuI	GTATCC	1 cut(s)	135
BglI	GCCNNNNNGGC	1 cut(s)	275
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	2 cut(s)	129, 149
BmgT120I	GGNCC	1 cut(s)	145
BmrFI	CCNGG	2 cut(s)	129, 149
BmsI	GCATC	2 cut(s)	55, 141
BpuMI	CCSGG	1 cut(s)	129
BsaJI	CCNNGG	3 cut(s)	108, 147, 316
BsaWI	WCCGGW	2 cut(s)	79, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	108, 147, 316
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	4 cut(s)	80, 128, 229, 248
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	245
BsmBI	CGTCTC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	51, 279
BspACI	CCGC	2 cut(s)	224, 258
BspANI	GGCC	1 cut(s)	146
BspMI	ACCTGC	1 cut(s)	223
BsrBI	CCGCTC	2 cut(s)	226, 258
BsrGI	TGTACA	1 cut(s)	210
BssECI	CCNNGG	3 cut(s)	108, 147, 316
BssMI	GATC	2 cut(s)	51, 279
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstAUI	TGTACA	1 cut(s)	210
BstC8I	GCNNGC	2 cut(s)	224, 267
BstDEI	CTNAG	2 cut(s)	16, 176
BstENI	CCTNNNNNAGG	1 cut(s)	52
BstKTI	GATC	2 cut(s)	54, 282
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	2 cut(s)	51, 279
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 275
BstNI	CCWGG	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	315
BstSCI	CCNGG	2 cut(s)	127, 147
BstV1I	GCAGC	1 cut(s)	32
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	146
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	2 cut(s)	224, 267
Cfr13I	GGNCC	1 cut(s)	145
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	13, 211
CviAII	CATG	1 cut(s)	312
CviJI	RGCY	5 cut(s)	47, 76, 146, 175, 265
CviKI_1	RGCY	5 cut(s)	47, 76, 146, 175, 265
CviQI	GTAC	2 cut(s)	13, 211
DdeI	CTNAG	2 cut(s)	16, 176
DpnI	GATC	2 cut(s)	53, 281
DpnII	GATC	2 cut(s)	51, 279
Eco130I	CCWWGG	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	1 cut(s)	315
FaiI	YATR	4 cut(s)	90, 92, 302, 313
FatI	CATG	1 cut(s)	311
FauI	CCCGC	2 cut(s)	231, 251
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	4 cut(s)	80, 128, 229, 248
HgaI	GACGC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	315
HpaII	CCGG	4 cut(s)	80, 128, 229, 248
HphI	GGTGA	2 cut(s)	97, 196
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	2 cut(s)	28, 171
Hpy188III	TCNNGA	2 cut(s)	55, 136
Hpy8I	GTNNAC	1 cut(s)	213
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 275
HpyF3I	CTNAG	2 cut(s)	16, 176
Hsp92II	CATG	1 cut(s)	315
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	51, 279
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	9 cut(s)	23, 40, 93, 134, 141, 161, 218, 242, 261
Lsp1109I	GCAGC	1 cut(s)	32
LweI	GCATC	2 cut(s)	55, 141
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	2 cut(s)	53, 281
MbiI	CCGCTC	2 cut(s)	226, 258
MboI	GATC	2 cut(s)	51, 279
MfeI	CAATTG	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	2 cut(s)	217, 272
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	2 cut(s)	255, 311
MseI	TTAA	1 cut(s)	287
MspI	CCGG	4 cut(s)	80, 128, 229, 248
MspR9I	CCNGG	2 cut(s)	129, 149
MunI	CAATTG	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	238, 275
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	2 cut(s)	51, 279
NlaIII	CATG	1 cut(s)	315
NspI	RCATGY	1 cut(s)	315
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	22
Ple19I	CGATCG	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	145
PvuI	CGATCG	1 cut(s)	282
RsaI	GTAC	2 cut(s)	14, 212
RsaNI	GTAC	2 cut(s)	13, 211
SaqAI	TTAA	1 cut(s)	287
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	2 cut(s)	51, 279
Sau96I	GGNCC	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	129, 149
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	6 cut(s)	78, 110, 125, 177, 209, 237
SfaNI	GCATC	2 cut(s)	55, 141
Sse9I	AATT	2 cut(s)	217, 272
SsiI	CCGC	2 cut(s)	224, 258
StyD4I	CCNGG	2 cut(s)	127, 147
StyI	CCWWGG	1 cut(s)	108
TaqI	TCGA	3 cut(s)	72, 135, 282
TasI	AATT	2 cut(s)	217, 272
TatI	WGTACW	2 cut(s)	12, 210
Tru1I	TTAA	1 cut(s)	287
Tru9I	TTAA	1 cut(s)	287
TseI	GCWGC	1 cut(s)	20
XagI	CCTNNNNNAGG	1 cut(s)	52
XceI	RCATGY	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.