Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

51369594 .. 51371339

Gene Structure 1746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G024950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGCAGAACCCTGAACACTCGGGGCGCCTCAGTAAGTGGGCGATTGAGCTCAGCGAATTTGACATAGAGTACAAACCAAGAACCGCCATGAAGGGCCAGGCAGTAGCGGACTTCATCGCTGAACTTAACGAGCGTCAGCCGGAACCCGGTACTCAAACAAAGCCCGGAACAGAAATAGTAACCAGTGCAGAGGCAACTCCCCCAGAGTCAGATTGGAACCTGCATGTGGACGGCTCCGCCTGTGCCAAGGCCAGCGGTGCCGGAGTCATCCTAACCGGACTCGGGGGACTGAACGCAGAGTACGCATTGAAATTCAACTTCAAAGCTTCAAACAATATGGCGGAGTACGAGGCGCTCATCGCCGGTCTACTCCTCGCCATTGACTCAGGAGCTGACAGCGTCAACGTATTCAGCGACTCCCAATTAGTCGTCAACCAGGTCAATGACAGCTTCCAAGCCAAGGACCAGCAGTTAGCGGCATATTTGGGGTATGTCAAAACGTTGCTAAAAAAGTTCAAATTTCACACAATCACACAAATCCCCAGGGAAAAGAACGCTAAGGCTGATTCACTGGTGAGACTGGCAACCGCCCAACCACATCAGAGTCCAGCGGACACAAGGGTGGAGTACCTTGACAAGCCAAGTATCACAAAGACCCTGGAGGAAATCTTCAACGTTCAAGTCAACCCCAGCTGGATAGACGAGATCATTACATATAAATGCAACGGAACGTTTCCAGAGGATAAGGCGGAGCCACTAACGGCAATAACTACCGCCAAGGTAATTCGCTTCCTCTGGAAGAACATCTACTGCCGCTACGGTGTCCCACATACAATCATTACAGACAACGGCACACAGTTCAACAATGAGGAGCTCATCTCCTTTACCACCAACTTGGGCACTAAGTTAAGATTTGCATCTGTCGCCCACCCCCAGACCAACGGCCAGGTCGAAGCAGCGAACAAGATAATCAAAAAGTTGTTAAAAAAGAAGCTCGACAACGCCAAGGGTTTATGGGCGGAAAAGCTCCCAGAGGCTCTGTGGGCCATCCGAACAACTCCAACCTCCGCCACCGGCGAGACACCTTTTTGTATGATGTTCGGCATAGAGGCTGTCTTGCCCATTGAAGTTACTCAACCTATAGCTAGAGTCGAAGGCTACTGCCCAGAGACCAACAGCGCCGGCGTCAACTTGGACAGGGACCTCCTAGAAGAGAAAAGACGCAAGGCCCATTTACACAATTTACAAAACAAACAACGGGTATCACGTTTCTACAACACCAGAGTCAAGGCCCGGAACCTCCAACTGGGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

438

Amino Acids

48.65

Weight (kDa)

7.09

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_H	PF00075	72 - 153	3e-06	RNase H
RVT_3	PF13456	83 - 194	7.5e-19	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	228
AccB1I	GGYRCC	2 cut(s)	24, 257
AccI	GTMKAC	1 cut(s)	367
AclI	AACGTT	3 cut(s)	500, 675, 731
AcoI	YGGCCR	1 cut(s)	943
AcsI	RAATTY	3 cut(s)	56, 311, 518
AcyI	GRCGYC	2 cut(s)	25, 1185
AfaI	GTAC	5 cut(s)	71, 151, 302, 347, 629
AfiI	CCNNNNNNNGG	6 cut(s)	146, 226, 282, 460, 1306, 1309
AgsI	TTSAA	9 cut(s)	310, 316, 322, 330, 517, 673, 680, 862, 1127
AjnI	CCWGG	5 cut(s)	96, 435, 542, 657, 945
AleI	CACNNNNGTG	1 cut(s)	620
AluBI	AGCT	9 cut(s)	49, 326, 392, 450, 693, 874, 994, 1027, 1145
AluI	AGCT	9 cut(s)	49, 326, 392, 450, 693, 874, 994, 1027, 1145
Alw21I	GWGCWC	2 cut(s)	51, 876
Alw26I	GTCTC	3 cut(s)	571, 1073, 1163
AlwNI	CAGNNNCTG	1 cut(s)	392
Ama87I	CYCGRG	2 cut(s)	19, 281
AoxI	GGCC	6 cut(s)	94, 249, 943, 1044, 1227, 1290
ApeKI	GCWGC	1 cut(s)	956
ApoI	RAATTY	3 cut(s)	56, 311, 518
AspLEI	GCGC	3 cut(s)	27, 355, 1181
AspS9I	GGNCC	6 cut(s)	94, 463, 1044, 1201, 1228, 1291
AsuC2I	CCSGG	3 cut(s)	147, 165, 1294
AsuHPI	GGTGA	1 cut(s)	586
AvaI	CYCGRG	2 cut(s)	19, 281
AvaII	GGWCC	2 cut(s)	463, 1201
BaeGI	GKGCMC	1 cut(s)	902
BanI	GGYRCC	2 cut(s)	24, 257
BanII	GRGCYC	2 cut(s)	51, 876
BarI	GAAGNNNNNNTAC	2 cut(s)	791, 823
Bbv12I	GWGCWC	2 cut(s)	51, 876
BbvI	GCAGC	1 cut(s)	968
BccI	CCATC	1 cut(s)	1055
BceAI	ACGGC	4 cut(s)	247, 777, 865, 958
BciT130I	CCWGG	5 cut(s)	98, 437, 544, 659, 947
BcnI	CCSGG	3 cut(s)	147, 165, 1294
BcoDI	GTCTC	3 cut(s)	571, 1073, 1163
BfaI	CTAG	3 cut(s)	1146, 1208, 1315
BfmI	CTRYAG	1 cut(s)	1140
BfoI	RGCGCY	3 cut(s)	28, 356, 1182
BfuAI	ACCTGC	1 cut(s)	228
BisI	GCNGC	3 cut(s)	477, 814, 957
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	3 cut(s)	478, 815, 958
Bme1390I	CCNGG	8 cut(s)	98, 147, 165, 437, 544, 659, 947, 1294
Bme18I	GGWCC	2 cut(s)	463, 1201
BmeT110I	CYCGRG	2 cut(s)	19, 281
BmgT120I	GGNCC	6 cut(s)	94, 463, 1044, 1201, 1228, 1291
BmiI	GGNNCC	8 cut(s)	26, 144, 218, 235, 259, 753, 1202, 1298
BmrFI	CCNGG	8 cut(s)	98, 147, 165, 437, 544, 659, 947, 1294
BmrI	ACTGGG	1 cut(s)	1316
BmsI	GCATC	1 cut(s)	926
BmuI	ACTGGG	1 cut(s)	1316
BplI	GAGNNNNNCTC	2 cut(s)	863, 895
BpmI	CTGGAG	1 cut(s)	680
Bpu10I	CCTNAGC	1 cut(s)	558
Bpu1102I	GCTNAGC	1 cut(s)	50
BpuMI	CCSGG	3 cut(s)	147, 165, 1294
BsaBI	GATNNNNATC	1 cut(s)	916
BsaHI	GRCGYC	2 cut(s)	25, 1185
BsaI	GGTCTC	1 cut(s)	1163
BsaJI	CCNNGG	7 cut(s)	246, 459, 542, 543, 657, 777, 1005
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	6 cut(s)	146, 226, 282, 460, 1306, 1309
Bse118I	RCCGGY	3 cut(s)	362, 1073, 1181
Bse1I	ACTGG	4 cut(s)	183, 576, 585, 1311
Bse8I	GATNNNNATC	1 cut(s)	916
BseBI	CCWGG	5 cut(s)	98, 437, 544, 659, 947
BseDI	CCNNGG	7 cut(s)	246, 459, 542, 543, 657, 777, 1005
BseGI	GGATG	2 cut(s)	267, 1047
BseJI	GATNNNNATC	1 cut(s)	916
BseLI	CCNNNNNNNGG	6 cut(s)	146, 226, 282, 460, 1306, 1309
BseMII	CTCAG	3 cut(s)	43, 64, 399
BseNI	ACTGG	4 cut(s)	183, 576, 585, 1311
BseRI	GAGGAG	2 cut(s)	362, 884
BseSI	GKGCMC	1 cut(s)	902
BseXI	GCAGC	1 cut(s)	968
BseYI	CCCAGC	1 cut(s)	689
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	6 cut(s)	96, 251, 945, 1046, 1229, 1292
BshNI	GGYRCC	2 cut(s)	24, 257
BsiHKAI	GWGCWC	2 cut(s)	51, 876
BsiHKCI	CYCGRG	2 cut(s)	19, 281
BsiSI	CCGG	9 cut(s)	140, 147, 165, 261, 276, 363, 1074, 1182, 1294
BslFI	GGGAC	3 cut(s)	300, 809, 1214
BslI	CCNNNNNNNGG	6 cut(s)	146, 226, 282, 460, 1306, 1309
BsmAI	GTCTC	3 cut(s)	571, 1073, 1163
BsmFI	GGGAC	3 cut(s)	300, 809, 1214
BsnI	GGCC	6 cut(s)	96, 251, 945, 1046, 1229, 1292
Bso31I	GGTCTC	1 cut(s)	1163
BsoBI	CYCGRG	2 cut(s)	19, 281
Bsp1286I	GDGCHC	3 cut(s)	51, 876, 902
Bsp143I	GATC	1 cut(s)	705
Bsp1720I	GCTNAGC	1 cut(s)	50
BspANI	GGCC	6 cut(s)	96, 251, 945, 1046, 1229, 1292
BspCNI	CTCAG	3 cut(s)	42, 63, 398
BspLI	GGNNCC	8 cut(s)	26, 144, 218, 235, 259, 753, 1202, 1298
BspMI	ACCTGC	1 cut(s)	228
BspT107I	GGYRCC	2 cut(s)	24, 257
BspTNI	GGTCTC	1 cut(s)	1163
BsrFI	RCCGGY	3 cut(s)	362, 1073, 1181
BsrI	ACTGG	4 cut(s)	183, 576, 585, 1311
BssAI	RCCGGY	3 cut(s)	362, 1073, 1181
BssECI	CCNNGG	7 cut(s)	246, 459, 542, 543, 657, 777, 1005
BssMI	GATC	1 cut(s)	705
BssNI	GRCGYC	2 cut(s)	25, 1185
BssT1I	CCWWGG	4 cut(s)	246, 459, 777, 1005
Bst2UI	CCWGG	5 cut(s)	98, 437, 544, 659, 947
Bst4CI	ACNGT	2 cut(s)	821, 858
Bst6I	CTCTTC	1 cut(s)	1206
BstACI	GRCGYC	2 cut(s)	25, 1185
BstC8I	GCNNGC	2 cut(s)	253, 1183
BstDEI	CTNAG	5 cut(s)	29, 50, 385, 558, 903
BstF5I	GGATG	2 cut(s)	267, 1047
BstH2I	RGCGCY	3 cut(s)	28, 356, 1182
BstHHI	GCGC	3 cut(s)	27, 355, 1181
BstKTI	GATC	1 cut(s)	708
BstMAI	GTCTC	3 cut(s)	571, 1073, 1163
BstMBI	GATC	1 cut(s)	705
BstMWI	GCNNNNNNNGC	5 cut(s)	257, 302, 359, 923, 1043
BstNI	CCWGG	5 cut(s)	98, 437, 544, 659, 947
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	8 cut(s)	96, 145, 163, 435, 542, 657, 945, 1292
BstSFI	CTRYAG	1 cut(s)	1140
BstSLI	GKGCMC	1 cut(s)	902
BstV1I	GCAGC	1 cut(s)	968
BstXI	CCANNNNNNTGG	1 cut(s)	895
BsuRI	GGCC	6 cut(s)	96, 251, 945, 1046, 1229, 1292
BtgZI	GCGATG	2 cut(s)	100, 343
BtsCI	GGATG	2 cut(s)	267, 1047
BtsIMutI	CAGTG	2 cut(s)	190, 569
BveI	ACCTGC	1 cut(s)	228
Cac8I	GCNNGC	2 cut(s)	253, 1183
CaiI	CAGNNNCTG	1 cut(s)	392
CfoI	GCGC	3 cut(s)	27, 355, 1181
Cfr10I	RCCGGY	3 cut(s)	362, 1073, 1181
Cfr13I	GGNCC	6 cut(s)	94, 463, 1044, 1201, 1228, 1291
CseI	GACGC	4 cut(s)	122, 388, 1174, 1230
CsiI	ACCWGGT	1 cut(s)	435
Csp6I	GTAC	5 cut(s)	70, 150, 301, 346, 628
CviAII	CATG	2 cut(s)	88, 224
CviQI	GTAC	5 cut(s)	70, 150, 301, 346, 628
DdeI	CTNAG	5 cut(s)	29, 50, 385, 558, 903
DinI	GGCGCC	1 cut(s)	26
DpnI	GATC	1 cut(s)	707
DpnII	GATC	1 cut(s)	705
EaeI	YGGCCR	1 cut(s)	943
Eam1104I	CTCTTC	1 cut(s)	1206
EarI	CTCTTC	1 cut(s)	1206
EciI	GGCGGA	5 cut(s)	226, 356, 764, 1034, 1057
Ecl136II	GAGCTC	2 cut(s)	49, 874
Eco130I	CCWWGG	4 cut(s)	246, 459, 777, 1005
Eco24I	GRGCYC	2 cut(s)	51, 876
Eco31I	GGTCTC	1 cut(s)	1163
Eco47I	GGWCC	2 cut(s)	463, 1201
Eco53kI	GAGCTC	2 cut(s)	49, 874
Eco88I	CYCGRG	2 cut(s)	19, 281
EcoICRI	GAGCTC	2 cut(s)	49, 874
EcoO109I	RGGNCCY	1 cut(s)	1201
EcoRII	CCWGG	5 cut(s)	96, 435, 542, 657, 945
EcoT14I	CCWWGG	4 cut(s)	246, 459, 777, 1005
EcoT38I	GRGCYC	2 cut(s)	51, 876
EgeI	GGCGCC	1 cut(s)	26
EheI	GGCGCC	1 cut(s)	26
ErhI	CCWWGG	4 cut(s)	246, 459, 777, 1005
FaeI	CATG	2 cut(s)	91, 227
FaqI	GGGAC	3 cut(s)	300, 809, 1214
FatI	CATG	2 cut(s)	87, 223
FblI	GTMKAC	1 cut(s)	367
Fnu4HI	GCNGC	3 cut(s)	477, 814, 957
FokI	GGATG	2 cut(s)	254, 1034
FriOI	GRGCYC	2 cut(s)	51, 876
Fsp4HI	GCNGC	3 cut(s)	477, 814, 957
FspBI	CTAG	3 cut(s)	1146, 1208, 1315
GlaI	GCGC	3 cut(s)	26, 354, 1180
GluI	GCNGC	3 cut(s)	477, 814, 957
GsaI	CCCAGC	1 cut(s)	693
GsuI	CTGGAG	1 cut(s)	680
HaeII	RGCGCY	3 cut(s)	28, 356, 1182
HaeIII	GGCC	6 cut(s)	96, 251, 945, 1046, 1229, 1292
HapII	CCGG	9 cut(s)	140, 147, 165, 261, 276, 363, 1074, 1182, 1294
HgaI	GACGC	4 cut(s)	122, 388, 1174, 1230
HhaI	GCGC	3 cut(s)	27, 355, 1181
Hin1I	GRCGYC	2 cut(s)	25, 1185
Hin1II	CATG	2 cut(s)	91, 227
Hin6I	GCGC	3 cut(s)	25, 353, 1179
HinP1I	GCGC	3 cut(s)	25, 353, 1179
HincII	GTYRAC	4 cut(s)	403, 433, 685, 1189
HindII	GTYRAC	4 cut(s)	403, 433, 685, 1189
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	9 cut(s)	206, 264, 279, 383, 416, 566, 604, 1149, 1284
HpaII	CCGG	9 cut(s)	140, 147, 165, 261, 276, 363, 1074, 1182, 1294
HphI	GGTGA	1 cut(s)	586
Hpy166II	GTNNAC	6 cut(s)	229, 368, 403, 433, 685, 1189
Hpy188I	TCNGA	3 cut(s)	211, 603, 1052
Hpy188III	TCNNGA	3 cut(s)	387, 737, 796
Hpy8I	GTNNAC	6 cut(s)	229, 368, 403, 433, 685, 1189
HpyAV	CCTTC	2 cut(s)	85, 1148
HpyCH4III	ACNGT	2 cut(s)	821, 858
HpyCH4IV	ACGT	5 cut(s)	405, 500, 675, 731, 1267
HpyCH4V	TGCA	5 cut(s)	4, 188, 223, 723, 917
HpyF10VI	GCNNNNNNNGC	5 cut(s)	257, 302, 359, 923, 1043
HpyF3I	CTNAG	5 cut(s)	29, 50, 385, 558, 903
HpySE526I	ACGT	5 cut(s)	405, 500, 675, 731, 1267
Hsp92I	GRCGYC	2 cut(s)	25, 1185
Hsp92II	CATG	2 cut(s)	91, 227
HspAI	GCGC	3 cut(s)	25, 353, 1179
KasI	GGCGCC	1 cut(s)	24
KroI	GCCGGC	1 cut(s)	1181
KroNI	GCCGGC	1 cut(s)	1183
Kzo9I	GATC	1 cut(s)	705
LmnI	GCTCC	5 cut(s)	239, 389, 751, 871, 1032
Lsp1109I	GCAGC	1 cut(s)	968
LweI	GCATC	1 cut(s)	926
MabI	ACCWGGT	1 cut(s)	435
MaeI	CTAG	3 cut(s)	1146, 1208, 1315
MaeII	ACGT	5 cut(s)	405, 500, 675, 731, 1267
MaeIII	GTNAC	2 cut(s)	178, 1129
MalI	GATC	1 cut(s)	707
MboI	GATC	1 cut(s)	705
MboII	GAAGA	3 cut(s)	661, 811, 1223
MhlI	GDGCHC	3 cut(s)	51, 876, 902
MluCI	AATT	6 cut(s)	56, 311, 422, 518, 783, 1240
Mly113I	GGCGCC	1 cut(s)	25
MlyI	GAGTC	8 cut(s)	215, 273, 273, 377, 410, 613, 1158, 1293
MmeI	TCCRAC	1 cut(s)	1085
MreI	CGCCGGCG	1 cut(s)	1181
MroNI	GCCGGC	1 cut(s)	1181
MseI	TTAA	3 cut(s)	126, 908, 983
MslI	CAYNNNNRTG	2 cut(s)	620, 718
MspA1I	CMGCKG	3 cut(s)	255, 611, 693
MspI	CCGG	9 cut(s)	140, 147, 165, 261, 276, 363, 1074, 1182, 1294
MspR9I	CCNGG	8 cut(s)	98, 147, 165, 437, 544, 659, 947, 1294
MvaI	CCWGG	5 cut(s)	98, 437, 544, 659, 947
MwoI	GCNNNNNNNGC	5 cut(s)	257, 302, 359, 923, 1043
NaeI	GCCGGC	1 cut(s)	1183
NarI	GGCGCC	1 cut(s)	25
NciI	CCSGG	3 cut(s)	147, 165, 1294
NdeII	GATC	1 cut(s)	705
NgoMIV	GCCGGC	1 cut(s)	1181
NlaIII	CATG	2 cut(s)	91, 227
NlaIV	GGNNCC	8 cut(s)	26, 144, 218, 235, 259, 753, 1202, 1298
NspI	RCATGY	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	620
PasI	CCCWGGG	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	3 cut(s)	411, 948, 1264
PdiI	GCCGGC	1 cut(s)	1183
PfeI	GAWTC	1 cut(s)	566
PflFI	GACNNNGTC	1 cut(s)	398
PkrI	GCNGC	3 cut(s)	478, 815, 958
PleI	GAGTC	8 cut(s)	214, 272, 273, 377, 410, 612, 1157, 1292
PluTI	GGCGCC	1 cut(s)	28
PpsI	GAGTC	8 cut(s)	214, 272, 273, 377, 410, 612, 1157, 1292
PpuMI	RGGWCCY	1 cut(s)	1201
Psp124BI	GAGCTC	2 cut(s)	51, 876
Psp1406I	AACGTT	3 cut(s)	500, 675, 731
Psp5II	RGGWCCY	1 cut(s)	1201
Psp6I	CCWGG	5 cut(s)	96, 435, 542, 657, 945
PspFI	CCCAGC	1 cut(s)	689
PspGI	CCWGG	5 cut(s)	96, 435, 542, 657, 945
PspN4I	GGNNCC	8 cut(s)	26, 144, 218, 235, 259, 753, 1202, 1298
PspPI	GGNCC	6 cut(s)	94, 463, 1044, 1201, 1228, 1291
PspPPI	RGGWCCY	1 cut(s)	1201
PsrI	GAACNNNNNNTAC	2 cut(s)	284, 316
PstNI	CAGNNNCTG	1 cut(s)	392
PsyI	GACNNNGTC	1 cut(s)	398
PvuII	CAGCTG	1 cut(s)	693
RsaI	GTAC	5 cut(s)	71, 151, 302, 347, 629
RsaNI	GTAC	5 cut(s)	70, 150, 301, 346, 628
RseI	CAYNNNNRTG	2 cut(s)	620, 718
SacI	GAGCTC	2 cut(s)	51, 876
SaqAI	TTAA	3 cut(s)	126, 908, 983
SatI	GCNGC	3 cut(s)	477, 814, 957
Sau3AI	GATC	1 cut(s)	705
Sau96I	GGNCC	6 cut(s)	94, 463, 1044, 1201, 1228, 1291
SchI	GAGTC	8 cut(s)	215, 273, 273, 377, 410, 613, 1158, 1293
ScrFI	CCNGG	8 cut(s)	98, 147, 165, 437, 544, 659, 947, 1294
SduI	GDGCHC	3 cut(s)	51, 876, 902
SexAI	ACCWGGT	1 cut(s)	435
SfaNI	GCATC	1 cut(s)	926
SfcI	CTRYAG	1 cut(s)	1140
SfoI	GGCGCC	1 cut(s)	26
SgrAI	CRCCGGYG	2 cut(s)	1073, 1181
SinI	GGWCC	2 cut(s)	463, 1201
SmiMI	CAYNNNNRTG	2 cut(s)	620, 718
Sse9I	AATT	6 cut(s)	56, 311, 422, 518, 783, 1240
SspDI	GGCGCC	1 cut(s)	24
SspMI	CTAG	3 cut(s)	1146, 1208, 1315
SstI	GAGCTC	2 cut(s)	51, 876
StyD4I	CCNGG	8 cut(s)	96, 145, 163, 435, 542, 657, 945, 1292
StyI	CCWWGG	4 cut(s)	246, 459, 777, 1005
TaaI	ACNGT	2 cut(s)	821, 858
TaiI	ACGT	5 cut(s)	408, 503, 678, 734, 1270
TaqI	TCGA	3 cut(s)	951, 996, 1152
TasI	AATT	6 cut(s)	56, 311, 422, 518, 783, 1240
TatI	WGTACW	1 cut(s)	69
TauI	GCSGC	2 cut(s)	479, 816
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	3 cut(s)	126, 908, 983
Tru9I	TTAA	3 cut(s)	126, 908, 983
TscAI	CASTG	2 cut(s)	190, 576
TseI	GCWGC	1 cut(s)	956
TspDTI	ATGAA	2 cut(s)	103, 104
TspGWI	ACGGA	1 cut(s)	741
TspRI	CASTG	2 cut(s)	190, 576
Tth111I	GACNNNGTC	1 cut(s)	398
VpaK11BI	GGWCC	2 cut(s)	463, 1201
XapI	RAATTY	3 cut(s)	56, 311, 518
XceI	RCATGY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	2 cut(s)	210, 1038
XmiI	GTMKAC	1 cut(s)	367
XspI	CTAG	3 cut(s)	1146, 1208, 1315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.