Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

6663661 .. 6664011

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11302.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGGCACCAAGATGGTTTTCGCGTTGGTGGCACACCCACAGACTAATGGTCAGGTGGAGACAGTTAACAAAATCATTAAAAAGCTTCTGAAGAAGAAGTTAGACGACGCAAAGGGTCTATGGGCAGAGAAGCTGCCGGAGATATTATGGGCAATCAGGACCACGGCAACTGAAGCAACGGGAGAAACGCCTTTCAGCATGGCCATTGGCACGGAGGCTGTTTTTCCAATTGAGATGTCAATACCGTTGGGAAGGGTCGAGAACTTTGATGCCACCACCAATGAGGAAAACCTCCGGTTAAATATTGACCTCATCGAGGAAAGGAGGGAGAAAGCAGACTTGCACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

117

Amino Acids

13.02

Weight (kDa)

5.42

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AccII	CGCG	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	201
AcuI	CTGAAG	2 cut(s)	110, 192
AfiI	CCNNNNNNNGG	1 cut(s)	316
AhdI	GACNNNNNGTC	1 cut(s)	48
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	85, 133
AluI	AGCT	2 cut(s)	85, 133
Alw26I	GTCTC	1 cut(s)	53
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	1 cut(s)	7
BceAI	ACGGC	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	53
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	159
BmeRI	GACNNNNNGTC	1 cut(s)	48
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	7
BmsI	GCATC	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	5
BsiSI	CCGG	2 cut(s)	137, 295
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	203
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	7
BspT107I	GGYRCC	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	64, 246
BstDSI	CCRYGG	1 cut(s)	162
BstENI	CCTNNNNNAGG	1 cut(s)	314
BstFNI	CGCG	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 173
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	159
CseI	GACGC	1 cut(s)	116
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	4 cut(s)	85, 133, 203, 218
CviKI_1	RGCY	4 cut(s)	85, 133, 203, 218
DriI	GACNNNNNGTC	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	201
Eam1105I	GACNNNNNGTC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	2 cut(s)	110, 192
EcoNI	CCTNNNNNAGG	1 cut(s)	314
FaeI	CATG	1 cut(s)	202
FaiI	YATR	3 cut(s)	121, 148, 200
FatI	CATG	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	134
GluI	GCNGC	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	2 cut(s)	137, 295
HgaI	GACGC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	83
HpaI	GTTAAC	1 cut(s)	67
HpaII	CCGG	2 cut(s)	137, 295
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	2 cut(s)	157, 259
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	2 cut(s)	64, 246
HpyCH4V	TGCA	1 cut(s)	343
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 173
Hsp92II	CATG	1 cut(s)	202
KspAI	GTTAAC	1 cut(s)	67
LpnPI	CCDG	4 cut(s)	38, 142, 150, 308
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	1 cut(s)	259
MboII	GAAGA	2 cut(s)	103, 106
MfeI	CAATTG	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	1 cut(s)	228
MluNI	TGGCCA	1 cut(s)	203
MnlI	CCTC	6 cut(s)	208, 277, 302, 310, 318, 320
Mox20I	TGGCCA	1 cut(s)	203
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	3 cut(s)	66, 78, 299
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	203
MspI	CCGG	2 cut(s)	137, 295
MunI	CAATTG	1 cut(s)	228
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	2 cut(s)	29, 173
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	1 cut(s)	7
PkrI	GCNGC	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	3 cut(s)	66, 78, 299
SatI	GCNGC	1 cut(s)	134
Sau96I	GGNCC	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	5 cut(s)	57, 87, 135, 294, 312
SfaNI	GCATC	1 cut(s)	259
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	1 cut(s)	228
SspI	AATATT	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	64, 246
TaqI	TCGA	2 cut(s)	258, 315
TasI	AATT	1 cut(s)	228
Tru1I	TTAA	3 cut(s)	66, 78, 299
Tru9I	TTAA	3 cut(s)	66, 78, 299
TseI	GCWGC	1 cut(s)	133
TspGWI	ACGGA	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	159
XagI	CCTNNNNNAGG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.