Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

6663029 .. 6663535

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11301.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAAAGTGGTGGGAGAGTCATCTGAGCTCGCTCCCATGAAAATAGTGGGAGAGTCATCCTCAGTCGACCAGGAAGGAATTAGTCTCGAGAAGAGAAGGAAGATGCACGTTGAGGAGCCGCCGGCGCCATCTTGGAAACTTTTTGTTGACGGCTCGGTGACGAGAAATAAAAGAGGGGCGAAAATAATATTAGAGACTCCCGATGGATTCAAGCATGAGTACGCCTTAGAATTTCAATTCCAGACCTCAAACAATGCGGCAGAGTACGAAGCCTTGATTGGTGGATTGCAGCTCGCCCGAGACATCGGCATGGAGAGAGTGCAAATGTTTAGTGATTCACAGTTTGTTGTAAATCAAGTCAACGGGAACTTCGAAGCTAAGGAGCCTCAGTTGAACTCTTACCAAGCGCTATCAAAAACAACACTTCAACCCGGGCAGTTCAAGTACGTAATAGTAGCCGTTGACTACTACACAAAGTGGGTGGAGGCGGAGCCCCTGGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

169

Amino Acids

18.89

Weight (kDa)

5.31

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_H	PF00075	46 - 127	9.5e-09	RNase H
RVT_3	PF13456	49 - 134	2.5e-12	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AccI	GTMKAC	1 cut(s)	66
AciI	CCGC	3 cut(s)	119, 257, 488
AcsI	RAATTY	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	125
AdeI	CACNNNGTG	1 cut(s)	477
AfaI	GTAC	3 cut(s)	221, 266, 446
AfeI	AGCGCT	1 cut(s)	408
AgsI	TTSAA	5 cut(s)	211, 236, 394, 428, 442
AjnI	CCWGG	2 cut(s)	69, 495
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AluBI	AGCT	3 cut(s)	28, 292, 377
AluI	AGCT	3 cut(s)	28, 292, 377
Alw21I	GWGCWC	1 cut(s)	30
Alw26I	GTCTC	3 cut(s)	89, 188, 294
Ama87I	CYCGRG	3 cut(s)	86, 297, 431
Aor51HI	AGCGCT	1 cut(s)	408
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	1 cut(s)	230
AspLEI	GCGC	2 cut(s)	127, 409
AsuC2I	CCSGG	2 cut(s)	432, 433
AsuHPI	GGTGA	1 cut(s)	169
AsuII	TTCGAA	1 cut(s)	372
AvaI	CYCGRG	3 cut(s)	86, 297, 431
BanI	GGYRCC	1 cut(s)	124
BanII	GRGCYC	2 cut(s)	30, 495
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	2 cut(s)	136, 197
BceAI	ACGGC	2 cut(s)	166, 443
BciT130I	CCWGG	2 cut(s)	71, 497
BcnI	CCSGG	2 cut(s)	432, 433
BcoDI	GTCTC	3 cut(s)	89, 188, 294
BfoI	RGCGCY	2 cut(s)	128, 410
BisI	GCNGC	3 cut(s)	119, 258, 290
BlsI	GCNGC	3 cut(s)	120, 259, 291
Bme1390I	CCNGG	4 cut(s)	71, 432, 433, 497
BmeT110I	CYCGRG	3 cut(s)	86, 297, 431
BmiI	GGNNCC	4 cut(s)	117, 126, 384, 492
BmrFI	CCNGG	4 cut(s)	71, 432, 433, 497
BmsI	GCATC	1 cut(s)	93
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
Bpu10I	CCTNAGC	1 cut(s)	378
Bpu14I	TTCGAA	1 cut(s)	372
BpuMI	CCSGG	2 cut(s)	432, 433
BsaAI	YACGTR	1 cut(s)	448
BsaHI	GRCGYC	1 cut(s)	125
BsaJI	CCNNGG	3 cut(s)	431, 495, 496
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bse118I	RCCGGY	1 cut(s)	121
BseBI	CCWGG	2 cut(s)	71, 497
BseDI	CCNNGG	3 cut(s)	431, 495, 496
BseGI	GGATG	1 cut(s)	56
BseMII	CTCAG	3 cut(s)	15, 75, 401
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	301
BshNI	GGYRCC	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	30
BsiHKCI	CYCGRG	3 cut(s)	86, 297, 431
BsiSI	CCGG	2 cut(s)	122, 432
BsmAI	GTCTC	3 cut(s)	89, 188, 294
BsoBI	CYCGRG	3 cut(s)	86, 297, 431
Bsp119I	TTCGAA	1 cut(s)	372
Bsp1286I	GDGCHC	2 cut(s)	30, 495
BspACI	CCGC	3 cut(s)	119, 257, 488
BspCNI	CTCAG	3 cut(s)	16, 74, 400
BspLI	GGNNCC	4 cut(s)	117, 126, 384, 492
BspT104I	TTCGAA	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	3 cut(s)	431, 495, 496
BssNI	GRCGYC	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	71, 497
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	86
BstACI	GRCGYC	1 cut(s)	125
BstBAI	YACGTR	1 cut(s)	448
BstBI	TTCGAA	1 cut(s)	372
BstC8I	GCNNGC	3 cut(s)	30, 123, 294
BstDEI	CTNAG	5 cut(s)	24, 61, 226, 378, 387
BstF5I	GGATG	1 cut(s)	56
BstH2I	RGCGCY	2 cut(s)	128, 410
BstHHI	GCGC	2 cut(s)	127, 409
BstMAI	GTCTC	3 cut(s)	89, 188, 294
BstMWI	GCNNNNNNNGC	1 cut(s)	124
BstNI	CCWGG	2 cut(s)	71, 497
BstSCI	CCNGG	4 cut(s)	69, 430, 431, 495
BstSNI	TACGTA	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	56
Cac8I	GCNNGC	3 cut(s)	30, 123, 294
CfoI	GCGC	2 cut(s)	127, 409
Cfr10I	RCCGGY	1 cut(s)	121
Cfr9I	CCCGGG	1 cut(s)	431
Csp6I	GTAC	3 cut(s)	220, 265, 445
CspCI	CAANNNNNGTGG	2 cut(s)	462, 497
CviAII	CATG	3 cut(s)	37, 215, 310
CviJI	RGCY	9 cut(s)	28, 118, 153, 272, 292, 377, 385, 458, 493
CviKI_1	RGCY	9 cut(s)	28, 118, 153, 272, 292, 377, 385, 458, 493
CviQI	GTAC	3 cut(s)	220, 265, 445
DdeI	CTNAG	5 cut(s)	24, 61, 226, 378, 387
DinI	GGCGCC	1 cut(s)	126
DraIII	CACNNNGTG	1 cut(s)	477
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
EciI	GGCGGA	1 cut(s)	503
Ecl136II	GAGCTC	1 cut(s)	28
Eco105I	TACGTA	1 cut(s)	448
Eco24I	GRGCYC	2 cut(s)	30, 495
Eco47III	AGCGCT	1 cut(s)	408
Eco53kI	GAGCTC	1 cut(s)	28
Eco88I	CYCGRG	3 cut(s)	86, 297, 431
EcoICRI	GAGCTC	1 cut(s)	28
EcoRII	CCWGG	2 cut(s)	69, 495
EcoT38I	GRGCYC	2 cut(s)	30, 495
EgeI	GGCGCC	1 cut(s)	126
EheI	GGCGCC	1 cut(s)	126
FaeI	CATG	3 cut(s)	40, 218, 313
FaiI	YATR	3 cut(s)	38, 216, 311
FatI	CATG	3 cut(s)	36, 214, 309
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	3 cut(s)	119, 258, 290
FokI	GGATG	1 cut(s)	43
FriOI	GRGCYC	2 cut(s)	30, 495
Fsp4HI	GCNGC	3 cut(s)	119, 258, 290
GlaI	GCGC	2 cut(s)	126, 408
GluI	GCNGC	3 cut(s)	119, 258, 290
HaeII	RGCGCY	2 cut(s)	128, 410
HapII	CCGG	2 cut(s)	122, 432
HhaI	GCGC	2 cut(s)	127, 409
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	3 cut(s)	40, 218, 313
Hin6I	GCGC	2 cut(s)	125, 407
HinP1I	GCGC	2 cut(s)	125, 407
HincII	GTYRAC	4 cut(s)	67, 148, 361, 463
HindII	GTYRAC	4 cut(s)	67, 148, 361, 463
HinfI	GANTC	5 cut(s)	17, 53, 196, 207, 335
HpaII	CCGG	2 cut(s)	122, 432
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	4 cut(s)	67, 148, 361, 463
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	4 cut(s)	86, 88, 200, 241
Hpy8I	GTNNAC	4 cut(s)	67, 148, 361, 463
HpyAV	CCTTC	2 cut(s)	68, 90
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4IV	ACGT	2 cut(s)	108, 447
HpyCH4V	TGCA	3 cut(s)	106, 289, 322
HpyF10VI	GCNNNNNNNGC	1 cut(s)	124
HpyF3I	CTNAG	5 cut(s)	24, 61, 226, 378, 387
HpySE526I	ACGT	2 cut(s)	108, 447
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	3 cut(s)	40, 218, 313
HspAI	GCGC	2 cut(s)	125, 407
KasI	GGCGCC	1 cut(s)	124
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
LmnI	GCTCC	4 cut(s)	37, 115, 382, 490
LpnPI	CCDG	6 cut(s)	56, 83, 135, 254, 445, 482
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	1 cut(s)	93
MaeII	ACGT	2 cut(s)	108, 447
MaeIII	GTNAC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	103, 112
MhlI	GDGCHC	2 cut(s)	30, 495
MluCI	AATT	3 cut(s)	78, 230, 236
Mly113I	GGCGCC	1 cut(s)	125
MlyI	GAGTC	3 cut(s)	26, 62, 190
MnlI	CCTC	6 cut(s)	70, 106, 167, 256, 396, 478
MreI	CGCCGGCG	1 cut(s)	121
MroNI	GCCGGC	1 cut(s)	121
MslI	CAYNNNNRTG	1 cut(s)	308
MspI	CCGG	2 cut(s)	122, 432
MspR9I	CCNGG	4 cut(s)	71, 432, 433, 497
MvaI	CCWGG	2 cut(s)	71, 497
MwoI	GCNNNNNNNGC	1 cut(s)	124
NaeI	GCCGGC	1 cut(s)	123
NarI	GGCGCC	1 cut(s)	125
NciI	CCSGG	2 cut(s)	432, 433
NgoMIV	GCCGGC	1 cut(s)	121
NlaIII	CATG	3 cut(s)	40, 218, 313
NlaIV	GGNNCC	4 cut(s)	117, 126, 384, 492
NmuCI	GTSAC	1 cut(s)	157
NspV	TTCGAA	1 cut(s)	372
PaeR7I	CTCGAG	1 cut(s)	86
PasI	CCCWGGG	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PdiI	GCCGGC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	207, 335
PkrI	GCNGC	3 cut(s)	120, 259, 291
PleI	GAGTC	3 cut(s)	25, 61, 190
PluTI	GGCGCC	1 cut(s)	128
PpsI	GAGTC	3 cut(s)	25, 61, 190
Ppu21I	YACGTR	1 cut(s)	448
Psp124BI	GAGCTC	1 cut(s)	30
Psp6I	CCWGG	2 cut(s)	69, 495
PspGI	CCWGG	2 cut(s)	69, 495
PspN4I	GGNNCC	4 cut(s)	117, 126, 384, 492
RsaI	GTAC	3 cut(s)	221, 266, 446
RsaNI	GTAC	3 cut(s)	220, 265, 445
RseI	CAYNNNNRTG	1 cut(s)	308
SacI	GAGCTC	1 cut(s)	30
SalI	GTCGAC	1 cut(s)	65
SatI	GCNGC	3 cut(s)	119, 258, 290
SchI	GAGTC	3 cut(s)	26, 62, 190
ScrFI	CCNGG	4 cut(s)	71, 432, 433, 497
SduI	GDGCHC	2 cut(s)	30, 495
SetI	ASST	6 cut(s)	30, 111, 248, 294, 379, 450
SfaNI	GCATC	1 cut(s)	93
SfoI	GGCGCC	1 cut(s)	126
Sfr274I	CTCGAG	1 cut(s)	86
SfuI	TTCGAA	1 cut(s)	372
SgrAI	CRCCGGYG	1 cut(s)	121
SlaI	CTCGAG	1 cut(s)	86
SmaI	CCCGGG	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SnaBI	TACGTA	1 cut(s)	448
Sse9I	AATT	3 cut(s)	78, 230, 236
SsiI	CCGC	3 cut(s)	119, 257, 488
SspDI	GGCGCC	1 cut(s)	124
SspI	AATATT	1 cut(s)	189
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	4 cut(s)	69, 430, 431, 495
TaaI	ACNGT	1 cut(s)	342
TaiI	ACGT	2 cut(s)	111, 450
TaqI	TCGA	3 cut(s)	66, 87, 372
TasI	AATT	3 cut(s)	78, 230, 236
TauI	GCSGC	2 cut(s)	121, 260
TfiI	GAWTC	2 cut(s)	207, 335
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	17, 53
TspMI	CCCGGG	1 cut(s)	431
XapI	RAATTY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	43
XhoI	CTCGAG	1 cut(s)	86
XmaI	CCCGGG	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.