Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8486821.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

1791 .. 2372

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8486821.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgataaccgccgagaagccaaccccccagcaatcagactggaacctacacgtggatggttccacctgcaccaaggccagtggcgccggagttatcatgacaggaccagggggactagacgccaaggaccaacagttggcggcatacttgggatacgtcaagacgctcctaaaaaaattcaaatttcacaccatcacacagatccccagggaaaggaactccaaggctgattcactggcaagaccaacaaccgctcagccataccagagtccagtggacacaagggtggagtctcttgacaggcctagcatcacaaaaaccctagcggaaatcttcaacattgaggtcaatcccggttggatgaaagagatcatcgagtacaagcgcagtggaacattgccagaagacaaggtcgaggcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

140

Amino Acids

15.48

Weight (kDa)

7.82

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccBSI	CCGCTC	1 cut(s)	254
AciI	CCGC	4 cut(s)	9, 140, 252, 326
AclWI	GGATC	1 cut(s)	196
AcsI	RAATTY	2 cut(s)	176, 182
AcvI	CACGTG	1 cut(s)	52
AcyI	GRCGYC	2 cut(s)	84, 120
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	3 cut(s)	52, 136, 213
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	181, 337
AjnI	CCWGG	2 cut(s)	106, 206
AleI	CACNNNNGTG	1 cut(s)	284
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	196
AoxI	GGCC	3 cut(s)	75, 302, 417
ApoI	RAATTY	2 cut(s)	176, 182
AspLEI	GCGC	2 cut(s)	86, 387
AspS9I	GGNCC	2 cut(s)	104, 127
AsuC2I	CCSGG	1 cut(s)	354
AvaII	GGWCC	2 cut(s)	104, 127
BanI	GGYRCC	1 cut(s)	83
BbrPI	CACGTG	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	411
BccI	CCATC	2 cut(s)	50, 200
BciT130I	CCWGG	2 cut(s)	108, 208
BciVI	GTATCC	1 cut(s)	146
BcnI	CCSGG	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	3 cut(s)	116, 306, 323
BfoI	RGCGCY	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	74
BfuI	GTATCC	1 cut(s)	146
BisI	GCNGC	1 cut(s)	141
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	3 cut(s)	108, 208, 354
Bme18I	GGWCC	2 cut(s)	104, 127
BmgT120I	GGNCC	2 cut(s)	104, 127
BmiI	GGNNCC	3 cut(s)	44, 61, 85
BmrFI	CCNGG	3 cut(s)	108, 208, 354
BmsI	GCATC	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	411
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	354
BsaAI	YACGTR	1 cut(s)	52
BsaHI	GRCGYC	2 cut(s)	84, 120
BsaJI	CCNNGG	6 cut(s)	72, 107, 123, 206, 207, 222
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 136, 213
Bse1I	ACTGG	4 cut(s)	44, 78, 240, 272
Bse3DI	GCAATG	1 cut(s)	395
BseBI	CCWGG	2 cut(s)	108, 208
BseDI	CCNNGG	6 cut(s)	72, 107, 123, 206, 207, 222
BseGI	GGATG	2 cut(s)	61, 366
BseLI	CCNNNNNNNGG	3 cut(s)	52, 136, 213
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	4 cut(s)	44, 78, 240, 272
BseYI	CCCAGC	1 cut(s)	27
BsgI	GTGCAG	1 cut(s)	52
BshFI	GGCC	3 cut(s)	77, 304, 419
BshNI	GGYRCC	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	87, 354
BslFI	GGGAC	1 cut(s)	126
BslI	CCNNNNNNNGG	3 cut(s)	52, 136, 213
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	126
BsnI	GGCC	3 cut(s)	77, 304, 419
Bsp143I	GATC	2 cut(s)	201, 369
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	4 cut(s)	9, 140, 252, 326
BspANI	GGCC	3 cut(s)	77, 304, 419
BspCNI	CTCAG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	96
BspLI	GGNNCC	3 cut(s)	44, 61, 85
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	196
BspT107I	GGYRCC	1 cut(s)	83
BsrBI	CCGCTC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	395
BsrI	ACTGG	4 cut(s)	44, 78, 240, 272
BssECI	CCNNGG	6 cut(s)	72, 107, 123, 206, 207, 222
BssMI	GATC	2 cut(s)	201, 369
BssNI	GRCGYC	2 cut(s)	84, 120
BssT1I	CCWWGG	3 cut(s)	72, 123, 222
Bst2UI	CCWGG	2 cut(s)	108, 208
Bst4CI	ACNGT	1 cut(s)	135
BstACI	GRCGYC	2 cut(s)	84, 120
BstBAI	YACGTR	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	61, 366
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	2 cut(s)	86, 387
BstKTI	GATC	2 cut(s)	204, 372
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	2 cut(s)	201, 369
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	2 cut(s)	108, 208
BstSCI	CCNGG	3 cut(s)	106, 206, 352
BstV2I	GAAGAC	1 cut(s)	411
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	77, 304, 419
BtsCI	GGATG	2 cut(s)	61, 366
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	4 cut(s)	85, 233, 279, 394
BveI	ACCTGC	1 cut(s)	74
CciI	TCATGA	1 cut(s)	96
CfoI	GCGC	2 cut(s)	86, 387
Cfr13I	GGNCC	2 cut(s)	104, 127
CseI	GACGC	2 cut(s)	128, 172
Csp6I	GTAC	1 cut(s)	379
CspCI	CAANNNNNGTGG	4 cut(s)	61, 96, 370, 405
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	6 cut(s)	19, 77, 227, 259, 304, 419
CviKI_1	RGCY	6 cut(s)	19, 77, 227, 259, 304, 419
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	1 cut(s)	255
DinI	GGCGCC	1 cut(s)	85
DpnI	GATC	2 cut(s)	203, 371
DpnII	GATC	2 cut(s)	201, 369
Eco130I	CCWWGG	3 cut(s)	72, 123, 222
Eco147I	AGGCCT	2 cut(s)	304, 419
Eco47I	GGWCC	2 cut(s)	104, 127
Eco72I	CACGTG	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	106, 206
EcoT14I	CCWWGG	3 cut(s)	72, 123, 222
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
ErhI	CCWWGG	3 cut(s)	72, 123, 222
FaeI	CATG	1 cut(s)	100
FaiI	YATR	3 cut(s)	98, 145, 262
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	2 cut(s)	68, 373
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	3 cut(s)	116, 306, 323
GlaI	GCGC	2 cut(s)	85, 386
GluI	GCNGC	1 cut(s)	141
GsaI	CCCAGC	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	77, 304, 419
HapII	CCGG	2 cut(s)	87, 354
HgaI	GACGC	2 cut(s)	128, 172
HhaI	GCGC	2 cut(s)	86, 387
Hin1I	GRCGYC	2 cut(s)	84, 120
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	2 cut(s)	84, 385
HinP1I	GCGC	2 cut(s)	84, 385
HinfI	GANTC	3 cut(s)	230, 268, 290
HpaII	CCGG	2 cut(s)	87, 354
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	1 cut(s)	37
Hpy188III	TCNNGA	3 cut(s)	97, 160, 296
Hpy8I	GTNNAC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	135
HpyCH4IV	ACGT	2 cut(s)	51, 156
HpyCH4V	TGCA	1 cut(s)	69
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	2 cut(s)	51, 156
Hsp92I	GRCGYC	2 cut(s)	84, 120
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	2 cut(s)	84, 385
KasI	GGCGCC	1 cut(s)	83
Kzo9I	GATC	2 cut(s)	201, 369
LmnI	GCTCC	1 cut(s)	171
LweI	GCATC	1 cut(s)	318
MaeI	CTAG	3 cut(s)	116, 306, 323
MaeII	ACGT	2 cut(s)	51, 156
MalI	GATC	2 cut(s)	203, 371
MbiI	CCGCTC	1 cut(s)	254
MboI	GATC	2 cut(s)	201, 369
MboII	GAAGA	2 cut(s)	325, 416
MflI	RGATCY	1 cut(s)	201
MluCI	AATT	2 cut(s)	176, 182
Mly113I	GGCGCC	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	277, 299
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	2 cut(s)	337, 409
MslI	CAYNNNNRTG	2 cut(s)	54, 284
MspI	CCGG	2 cut(s)	87, 354
MspR9I	CCNGG	3 cut(s)	108, 208, 354
MvaI	CCWGG	2 cut(s)	108, 208
MwoI	GCNNNNNNNGC	1 cut(s)	83
NarI	GGCGCC	1 cut(s)	84
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	2 cut(s)	201, 369
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	3 cut(s)	44, 61, 85
NmeAIII	GCCGAG	1 cut(s)	37
OliI	CACNNNNGTG	1 cut(s)	284
PagI	TCATGA	1 cut(s)	96
PaqCI	CACCTGC	1 cut(s)	74
PasI	CCCWGGG	1 cut(s)	207
PceI	AGGCCT	2 cut(s)	304, 419
PfeI	GAWTC	1 cut(s)	230
PflFI	GACNNNGTC	1 cut(s)	410
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	2 cut(s)	276, 298
PluTI	GGCGCC	1 cut(s)	87
PmaCI	CACGTG	1 cut(s)	52
PmlI	CACGTG	1 cut(s)	52
PpsI	GAGTC	2 cut(s)	276, 298
Ppu21I	YACGTR	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	106, 206
PspCI	CACGTG	1 cut(s)	52
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	2 cut(s)	106, 206
PspN4I	GGNNCC	3 cut(s)	44, 61, 85
PspPI	GGNCC	2 cut(s)	104, 127
PsuI	RGATCY	1 cut(s)	201
PsyI	GACNNNGTC	1 cut(s)	410
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	2 cut(s)	54, 284
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	2 cut(s)	201, 369
Sau96I	GGNCC	2 cut(s)	104, 127
SchI	GAGTC	2 cut(s)	277, 299
ScrFI	CCNGG	3 cut(s)	108, 208, 354
SetI	ASST	6 cut(s)	48, 54, 68, 159, 348, 414
SfaNI	GCATC	1 cut(s)	318
SfoI	GGCGCC	1 cut(s)	85
SinI	GGWCC	2 cut(s)	104, 127
SmiMI	CAYNNNNRTG	2 cut(s)	54, 284
Sse9I	AATT	2 cut(s)	176, 182
SseBI	AGGCCT	2 cut(s)	304, 419
SsiI	CCGC	4 cut(s)	9, 140, 252, 326
SspDI	GGCGCC	1 cut(s)	83
SspMI	CTAG	3 cut(s)	116, 306, 323
StuI	AGGCCT	2 cut(s)	304, 419
StyD4I	CCNGG	3 cut(s)	106, 206, 352
StyI	CCWWGG	3 cut(s)	72, 123, 222
TaaI	ACNGT	1 cut(s)	135
TaiI	ACGT	2 cut(s)	54, 159
TaqI	TCGA	2 cut(s)	375, 414
TasI	AATT	2 cut(s)	176, 182
TatI	WGTACW	1 cut(s)	378
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	230
TscAI	CASTG	4 cut(s)	85, 240, 279, 394
TspDTI	ATGAA	1 cut(s)	377
TspRI	CASTG	4 cut(s)	85, 240, 279, 394
Tth111I	GACNNNGTC	1 cut(s)	410
Van91I	CCANNNNNTGG	1 cut(s)	136
VpaK11BI	GGWCC	2 cut(s)	104, 127
XapI	RAATTY	2 cut(s)	176, 182
XspI	CTAG	3 cut(s)	116, 306, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.