Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8396209.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

617 .. 1114

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8396209.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgatgaaagtgccaaccccagtgggaatagcaaccatatggggagatcaagctgcggcaaggcaatgttattctttaactgcatctaggggtaagggaaagtcagaaatgttgcttgtagccaccgaccttctcacggacaggtacgaggacccaagggatacgaactttgacgaagaacggccctgtgccatggaggacatcgaggaagtcgtgttatccgaagaattcccagacagaattgtcgagataggtaccaagttggccctggctatcagggaaaacctaatctcgttcctctggtccaatgcatccgctttcgctaggtcatacgaggacctgctcggtatcccaactgacatagccatgcacaaccttagcattgttcctttctcggcaccggtaagacaaaagctcagagccttcacacatgataagtaccgagctatccaggttgaagtgaagaagttaatggccatcaattttgtagggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

165

Amino Acids

18.55

Weight (kDa)

5.27

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	242
Acc36I	ACCTGC	1 cut(s)	348
Acc65I	GGTACC	1 cut(s)	254
AccB1I	GGYRCC	2 cut(s)	254, 397
AciI	CCGC	2 cut(s)	56, 315
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	1 cut(s)	227
AfaI	GTAC	3 cut(s)	146, 256, 440
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgeI	ACCGGT	1 cut(s)	400
AgsI	TTSAA	1 cut(s)	458
AjnI	CCWGG	2 cut(s)	267, 450
AluBI	AGCT	3 cut(s)	53, 415, 446
AluI	AGCT	3 cut(s)	53, 415, 446
AoxI	GGCC	3 cut(s)	182, 264, 474
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	227
AsiGI	ACCGGT	1 cut(s)	400
Asp718I	GGTACC	1 cut(s)	254
AspS9I	GGNCC	5 cut(s)	151, 183, 265, 303, 337
AvaII	GGWCC	3 cut(s)	151, 303, 337
BalI	TGGCCA	1 cut(s)	476
BanI	GGYRCC	2 cut(s)	254, 397
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	485
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	2 cut(s)	269, 452
BciVI	GTATCC	2 cut(s)	154, 359
BfaI	CTAG	2 cut(s)	87, 324
BfuAI	ACCTGC	1 cut(s)	348
BfuI	GTATCC	2 cut(s)	154, 359
BisI	GCNGC	2 cut(s)	54, 57
BlsI	GCNGC	2 cut(s)	55, 58
Bme1390I	CCNGG	2 cut(s)	269, 452
Bme18I	GGWCC	3 cut(s)	151, 303, 337
BmgT120I	GGNCC	5 cut(s)	151, 183, 265, 303, 337
BmiI	GGNNCC	3 cut(s)	153, 256, 399
BmrFI	CCNGG	2 cut(s)	269, 452
BmrI	ACTGGG	1 cut(s)	14
BmsI	GCATC	2 cut(s)	92, 320
BmuI	ACTGGG	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	377
BsaJI	CCNNGG	3 cut(s)	155, 192, 267
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	400
Bse1I	ACTGG	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	269, 452
BseDI	CCNNGG	3 cut(s)	155, 192, 267
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMI	GCAATG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	430
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	3 cut(s)	184, 266, 476
BshNI	GGYRCC	2 cut(s)	254, 397
BshTI	ACCGGT	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	136
BsnI	GGCC	3 cut(s)	184, 266, 476
Bsp143I	GATC	1 cut(s)	46
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	2 cut(s)	56, 315
BspANI	GGCC	3 cut(s)	184, 266, 476
BspCNI	CTCAG	1 cut(s)	429
BspLI	GGNNCC	3 cut(s)	153, 256, 399
BspMI	ACCTGC	1 cut(s)	348
BspT107I	GGYRCC	2 cut(s)	254, 397
BsrDI	GCAATG	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	3 cut(s)	155, 192, 267
BssMI	GATC	1 cut(s)	46
BssT1I	CCWWGG	2 cut(s)	155, 192
Bst2UI	CCWGG	2 cut(s)	269, 452
BstDEI	CTNAG	2 cut(s)	377, 416
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	311
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstNI	CCWGG	2 cut(s)	269, 452
BstSCI	CCNGG	2 cut(s)	267, 450
BstV1I	GCAGC	1 cut(s)	40
BsuI	GTATCC	2 cut(s)	154, 359
BsuRI	GGCC	3 cut(s)	184, 266, 476
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	311
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	348
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	5 cut(s)	151, 183, 265, 303, 337
Csp6I	GTAC	3 cut(s)	145, 255, 439
CspAI	ACCGGT	1 cut(s)	400
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviAII	CATG	3 cut(s)	193, 367, 431
CviQI	GTAC	3 cut(s)	145, 255, 439
DdeI	CTNAG	2 cut(s)	377, 416
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
DrdI	GACNNNNNNGTC	1 cut(s)	242
DseDI	GACNNNNNNGTC	1 cut(s)	242
EaeI	YGGCCR	1 cut(s)	474
Eco130I	CCWWGG	2 cut(s)	155, 192
Eco47I	GGWCC	3 cut(s)	151, 303, 337
EcoO109I	RGGNCCY	2 cut(s)	151, 337
EcoRI	GAATTC	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	267, 450
EcoT14I	CCWWGG	2 cut(s)	155, 192
EcoT22I	ATGCAT	1 cut(s)	313
ErhI	CCWWGG	2 cut(s)	155, 192
FaeI	CATG	3 cut(s)	196, 370, 434
FaiI	YATR	7 cut(s)	38, 40, 194, 331, 362, 368, 432
FatI	CATG	3 cut(s)	192, 366, 430
FauNDI	CATATG	1 cut(s)	38
Fnu4HI	GCNGC	2 cut(s)	54, 57
FokI	GGATG	1 cut(s)	298
Fsp4HI	GCNGC	2 cut(s)	54, 57
FspBI	CTAG	2 cut(s)	87, 324
GluI	GCNGC	2 cut(s)	54, 57
HaeIII	GGCC	3 cut(s)	184, 266, 476
HapII	CCGG	1 cut(s)	401
Hin1II	CATG	3 cut(s)	196, 370, 434
HpaII	CCGG	1 cut(s)	401
Hpy188I	TCNGA	3 cut(s)	106, 223, 419
Hpy188III	TCNNGA	1 cut(s)	247
HpyAV	CCTTC	2 cut(s)	140, 433
HpyCH4V	TGCA	3 cut(s)	83, 311, 370
HpyF3I	CTNAG	2 cut(s)	377, 416
Hsp92II	CATG	3 cut(s)	196, 370, 434
KpnI	GGTACC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	46
Lsp1109I	GCAGC	1 cut(s)	40
LweI	GCATC	2 cut(s)	92, 320
MaeI	CTAG	2 cut(s)	87, 324
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	3 cut(s)	188, 236, 475
MlsI	TGGCCA	1 cut(s)	476
MluCI	AATT	3 cut(s)	227, 240, 481
MluNI	TGGCCA	1 cut(s)	476
MnlI	CCTC	5 cut(s)	142, 190, 199, 308, 328
Mox20I	TGGCCA	1 cut(s)	476
Mph1103I	ATGCAT	1 cut(s)	313
MscI	TGGCCA	1 cut(s)	476
MseI	TTAA	2 cut(s)	77, 470
MslI	CAYNNNNRTG	1 cut(s)	365
Msp20I	TGGCCA	1 cut(s)	476
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	2 cut(s)	269, 452
MvaI	CCWGG	2 cut(s)	269, 452
NcoI	CCATGG	1 cut(s)	192
NdeI	CATATG	1 cut(s)	38
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	3 cut(s)	196, 370, 434
NlaIV	GGNNCC	3 cut(s)	153, 256, 399
NmeAIII	GCCGAG	1 cut(s)	374
NsiI	ATGCAT	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 219
PinAI	ACCGGT	1 cut(s)	400
PkrI	GCNGC	2 cut(s)	55, 58
PpuMI	RGGWCCY	2 cut(s)	151, 337
Psp5II	RGGWCCY	2 cut(s)	151, 337
Psp6I	CCWGG	2 cut(s)	267, 450
PspGI	CCWGG	2 cut(s)	267, 450
PspN4I	GGNNCC	3 cut(s)	153, 256, 399
PspPI	GGNCC	5 cut(s)	151, 183, 265, 303, 337
PspPPI	RGGWCCY	2 cut(s)	151, 337
RsaI	GTAC	3 cut(s)	146, 256, 440
RsaNI	GTAC	3 cut(s)	145, 255, 439
RseI	CAYNNNNRTG	1 cut(s)	365
SaqAI	TTAA	2 cut(s)	77, 470
SatI	GCNGC	2 cut(s)	54, 57
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	5 cut(s)	151, 183, 265, 303, 337
ScrFI	CCNGG	2 cut(s)	269, 452
SfaNI	GCATC	2 cut(s)	92, 320
SinI	GGWCC	3 cut(s)	151, 303, 337
SmiMI	CAYNNNNRTG	1 cut(s)	365
Sse9I	AATT	3 cut(s)	227, 240, 481
SsiI	CCGC	2 cut(s)	56, 315
SspMI	CTAG	2 cut(s)	87, 324
StyD4I	CCNGG	2 cut(s)	267, 450
StyI	CCWWGG	2 cut(s)	155, 192
TaqI	TCGA	2 cut(s)	204, 246
TasI	AATT	3 cut(s)	227, 240, 481
TauI	GCSGC	1 cut(s)	59
Tru1I	TTAA	2 cut(s)	77, 470
Tru9I	TTAA	2 cut(s)	77, 470
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	3 cut(s)	151, 303, 337
XapI	RAATTY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XspI	CTAG	2 cut(s)	87, 324
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.