Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005038.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

82811 .. 83518

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005038.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgaggcactcatcgctcaacattttcagtgacttgcaacttgtcgtcaaccaagtcaatgacagttttgaagccaaggacaaacaactaatgacatacttagggtatgtaaaaaccctcatcggaaaatttaaatttcactctatcacacagatccctagagaaaagaacgccaaggcagattctctggcaaggttaacaaccactcaacctcatcaaagtccagtggacacaagggtcgaatgccttaacaaaccaaacatcactaaaaccctagcggagatattcaacatcgagctcaatcccaatttaatggaagaaataatggagtacaagcggaatggaatactgccaactaacaaagacaaacacggcagctcaaccgaagagcaaccctctacaacatccaaaatggtgcacaatccttggcaaattgaaccatgcgtcaaggctacttttggcccaggctcagcgacgacgttaaagaagtctccaagtcatggcacaagtgctaacaatatgctgatctcccacatgcaccagcggagcccctttcaatcatcatcggcccttggattcactcaacttggggcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

198

Amino Acids

22.11

Weight (kDa)

9.23

Isoelectric Point (pI)

60.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	500
AciI	CCGC	3 cut(s)	278, 337, 544
AclWI	GGATC	1 cut(s)	148
AcsI	RAATTY	2 cut(s)	128, 134
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	4 cut(s)	71, 289, 437, 557
AjnI	CCWGG	1 cut(s)	463
AluBI	AGCT	2 cut(s)	298, 378
AluI	AGCT	2 cut(s)	298, 378
Alw21I	GWGCWC	2 cut(s)	300, 420
Alw26I	GTCTC	1 cut(s)	495
Alw44I	GTGCAC	1 cut(s)	416
AlwI	GGATC	1 cut(s)	148
AoxI	GGCC	3 cut(s)	460, 567, 591
ApaLI	GTGCAC	1 cut(s)	416
ApeKI	GCWGC	1 cut(s)	375
ApoI	RAATTY	2 cut(s)	128, 134
AspS9I	GGNCC	3 cut(s)	461, 568, 591
BaeGI	GKGCMC	1 cut(s)	420
BanII	GRGCYC	2 cut(s)	300, 551
Bbv12I	GWGCWC	2 cut(s)	300, 420
BbvI	GCAGC	1 cut(s)	387
BceAI	ACGGC	1 cut(s)	388
BciT130I	CCWGG	1 cut(s)	465
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	2 cut(s)	159, 275
BisI	GCNGC	1 cut(s)	376
BlpI	GCTNAGC	1 cut(s)	469
BlsI	GCNGC	1 cut(s)	377
Bme1390I	CCNGG	1 cut(s)	465
BmgT120I	GGNCC	3 cut(s)	461, 568, 591
BmiI	GGNNCC	2 cut(s)	548, 592
BmrFI	CCNGG	1 cut(s)	465
BplI	GAGNNNNNCTC	2 cut(s)	380, 412
Bpu1102I	GCTNAGC	1 cut(s)	469
BsaJI	CCNNGG	5 cut(s)	75, 174, 425, 463, 571
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	5 cut(s)	75, 174, 425, 463, 571
BseGI	GGATG	1 cut(s)	404
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	1 cut(s)	387
BshFI	GGCC	3 cut(s)	462, 569, 593
BsiHKAI	GWGCWC	2 cut(s)	300, 420
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	1 cut(s)	495
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	3 cut(s)	462, 569, 593
Bsp1286I	GDGCHC	3 cut(s)	300, 420, 551
Bsp143I	GATC	2 cut(s)	153, 525
Bsp1720I	GCTNAGC	1 cut(s)	469
BspACI	CCGC	3 cut(s)	278, 337, 544
BspANI	GGCC	3 cut(s)	462, 569, 593
BspCNI	CTCAG	1 cut(s)	482
BspLI	GGNNCC	2 cut(s)	548, 592
BspPI	GGATC	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	381
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	5 cut(s)	75, 174, 425, 463, 571
BssMI	GATC	2 cut(s)	153, 525
BssT1I	CCWWGG	4 cut(s)	75, 174, 425, 571
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	100, 469
BstF5I	GGATG	1 cut(s)	404
BstKTI	GATC	2 cut(s)	156, 528
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	2 cut(s)	153, 525
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	1 cut(s)	538
BstSCI	CCNGG	1 cut(s)	463
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	387
BstX2I	RGATCY	1 cut(s)	153
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	462, 569, 593
BtsCI	GGATG	1 cut(s)	404
BtsIMutI	CAGTG	2 cut(s)	34, 231
Cfr13I	GGNCC	3 cut(s)	461, 568, 591
CseI	GACGC	1 cut(s)	433
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	3 cut(s)	441, 500, 535
CviJI	RGCY	9 cut(s)	74, 298, 378, 452, 462, 468, 549, 569, 593
CviKI_1	RGCY	9 cut(s)	74, 298, 378, 452, 462, 468, 549, 569, 593
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	2 cut(s)	100, 469
DpnI	GATC	2 cut(s)	155, 527
DpnII	GATC	2 cut(s)	153, 525
DraI	TTTAAA	1 cut(s)	133
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Ecl136II	GAGCTC	1 cut(s)	298
Eco130I	CCWWGG	4 cut(s)	75, 174, 425, 571
Eco24I	GRGCYC	2 cut(s)	300, 551
Eco53kI	GAGCTC	1 cut(s)	298
EcoICRI	GAGCTC	1 cut(s)	298
EcoO109I	RGGNCCY	1 cut(s)	591
EcoRII	CCWGG	1 cut(s)	463
EcoT14I	CCWWGG	4 cut(s)	75, 174, 425, 571
EcoT38I	GRGCYC	2 cut(s)	300, 551
ErhI	CCWWGG	4 cut(s)	75, 174, 425, 571
FaeI	CATG	3 cut(s)	444, 503, 538
FaiI	YATR	6 cut(s)	97, 108, 442, 501, 521, 536
FatI	CATG	3 cut(s)	440, 499, 534
Fnu4HI	GCNGC	1 cut(s)	376
FokI	GGATG	1 cut(s)	391
FriOI	GRGCYC	2 cut(s)	300, 551
Fsp4HI	GCNGC	1 cut(s)	376
FspBI	CTAG	2 cut(s)	159, 275
GluI	GCNGC	1 cut(s)	376
HaeIII	GGCC	3 cut(s)	462, 569, 593
HgaI	GACGC	1 cut(s)	433
Hin1II	CATG	3 cut(s)	444, 503, 538
HincII	GTYRAC	2 cut(s)	49, 198
HindII	GTYRAC	2 cut(s)	49, 198
HinfI	GANTC	2 cut(s)	182, 576
HpaI	GTTAAC	1 cut(s)	198
Hpy166II	GTNNAC	4 cut(s)	49, 198, 229, 418
Hpy188I	TCNGA	1 cut(s)	125
Hpy8I	GTNNAC	4 cut(s)	49, 198, 229, 418
Hpy99I	CGWCG	2 cut(s)	478, 481
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	3 cut(s)	37, 418, 538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	2 cut(s)	100, 469
HpySE526I	ACGT	1 cut(s)	479
Hsp92II	CATG	3 cut(s)	444, 503, 538
KspAI	GTTAAC	1 cut(s)	198
Kzo9I	GATC	2 cut(s)	153, 525
LguI	GCTCTTC	1 cut(s)	381
LmnI	GCTCC	1 cut(s)	546
LpnPI	CCDG	5 cut(s)	173, 237, 450, 477, 554
Lsp1109I	GCAGC	1 cut(s)	387
MaeI	CTAG	2 cut(s)	159, 275
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	1 cut(s)	29
MalI	GATC	2 cut(s)	155, 527
MboI	GATC	2 cut(s)	153, 525
MboII	GAAGA	2 cut(s)	329, 398
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	3 cut(s)	300, 420, 551
MluCI	AATT	4 cut(s)	128, 134, 307, 432
MnlI	CCTC	3 cut(s)	128, 222, 406
MseI	TTAA	5 cut(s)	132, 197, 249, 311, 482
MspA1I	CMGCKG	1 cut(s)	544
MspR9I	CCNGG	1 cut(s)	465
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	465
MwoI	GCNNNNNNNGC	1 cut(s)	13
NdeII	GATC	2 cut(s)	153, 525
NlaIII	CATG	3 cut(s)	444, 503, 538
NlaIV	GGNNCC	2 cut(s)	548, 592
NmuCI	GTSAC	1 cut(s)	29
NspI	RCATGY	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	381
PctI	GAATGC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	182, 576
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	2 cut(s)	548, 592
PspPI	GGNCC	3 cut(s)	461, 568, 591
PsuI	RGATCY	1 cut(s)	153
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SacI	GAGCTC	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	381
SaqAI	TTAA	5 cut(s)	132, 197, 249, 311, 482
SatI	GCNGC	1 cut(s)	376
Sau3AI	GATC	2 cut(s)	153, 525
Sau96I	GGNCC	3 cut(s)	461, 568, 591
ScrFI	CCNGG	1 cut(s)	465
SduI	GDGCHC	3 cut(s)	300, 420, 551
SetI	ASST	5 cut(s)	197, 214, 300, 380, 482
SmiI	ATTTAAAT	1 cut(s)	133
Sse9I	AATT	4 cut(s)	128, 134, 307, 432
SsiI	CCGC	3 cut(s)	278, 337, 544
SspMI	CTAG	2 cut(s)	159, 275
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	463
StyI	CCWWGG	4 cut(s)	75, 174, 425, 571
SwaI	ATTTAAAT	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	1 cut(s)	482
TaqI	TCGA	2 cut(s)	240, 294
TasI	AATT	4 cut(s)	128, 134, 307, 432
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	2 cut(s)	182, 576
Tru1I	TTAA	5 cut(s)	132, 197, 249, 311, 482
Tru9I	TTAA	5 cut(s)	132, 197, 249, 311, 482
TscAI	CASTG	2 cut(s)	34, 231
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	1 cut(s)	375
Tsp45I	GTSAC	1 cut(s)	29
TspRI	CASTG	2 cut(s)	34, 231
Van91I	CCANNNNNTGG	1 cut(s)	500
VneI	GTGCAC	1 cut(s)	416
XapI	RAATTY	2 cut(s)	128, 134
XceI	RCATGY	1 cut(s)	538
XspI	CTAG	2 cut(s)	159, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.