Rh5CG445500

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000250
Physical Location & Seq
Reverse (-)
61855922 .. 61858662
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG445500.1

Sequence Viewer

Length: 780 bp
ATGAAGGCACCAATCCCTGGTGTCCCTCTCAAGCTATACCTAGCTGCAATTGAAATTGCAGTGGGGGCTTTACTAGCCCAAGATGATGAAAATGGAGAAGAATGCGTTGTGTACTATGTGAGTCGCTTGTTGGGAGAAGCTGAAGCACGCTATCCTAAGACTGAAAGGATCTGCCTTGCGCTTATCTACGCAGCACAAAGATTTCGCCACTACTTTCTAGATCACAAGCTCTATCTCATGGTGAAGACTGATCTTGTAAGGTACCTACTCACAAAACCAATCTTATCTAGCCGATTGGCTAGGTGGTTGCTGCAACTAGCAGAGTTTGATATTGAATGCATAACGCCCCGCGCCATTAAGGGGCAAGCAGTAGCCGACATGCTTGCTTTATTCCCTGGAAGTGAAGAAATTCCACTCATGCAGGACATTCTTGGGGAATTCCCAAAAATGATACAAGTTAAAGAGGACATCGAAGAGGTACTTTATGGATGGGAGAGTGATGTACAGAAGAGGATTCAACGGAAAACCGTTGCGATGTCTTGGAGCTATAGAGTCACAGCAAGTGTTAGAAGAAATGCATGTAGGAGAATGCGGAGAACATTAAGGCAGAAGAAAGCTTTACCGCCAGTTGTTGAGTCTTGGATATTATTGGCCAACAATGCAAAGAGATGCCCACCTAAAGGTGAAGAAATGCCATACATGCTAAGCACATGCCAATCAAATTCACAAGCCATTAACCACTCTTCAAGACATGCGACACCTTGGCCCTTCCACACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

259

Amino Acids

29.76

Weight (kDa)

9.17

Isoelectric Point (pI)

67.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 2 - 76 5.3e-16 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 9 - 109 2.3e-22 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica Prupe.6G166700_v2.0.a1
pyrus_communis pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis RchiOBHm_Chr5g0018261
rosa_laevigata RLG00000022447
rosa_multiflora Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa Rorug02G0381000
rosa_samantha Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 261
AccB1I GGYRCC 2 cut(s) 7, 261
AccB7I CCANNNNNTGG 1 cut(s) 17
AccII CGCG 1 cut(s) 351
AciI CCGC 3 cut(s) 349, 592, 623
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 1 cut(s) 651
AcsI RAATTY 3 cut(s) 408, 437, 721
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 4 cut(s) 113, 263, 480, 504
AfiI CCNNNNNNNGG 3 cut(s) 17, 360, 680
AgsI TTSAA 4 cut(s) 53, 335, 518, 747
AjnI CCWGG 2 cut(s) 16, 394
AluBI AGCT 6 cut(s) 34, 44, 140, 229, 546, 617
AluI AGCT 6 cut(s) 34, 44, 140, 229, 546, 617
AlwI GGATC 1 cut(s) 176
AoxI GGCC 2 cut(s) 651, 764
ApeKI GCWGC 3 cut(s) 44, 191, 310
ApoI RAATTY 3 cut(s) 408, 437, 721
Asp700I GAANNNNTTC 1 cut(s) 408
Asp718I GGTACC 1 cut(s) 261
AspLEI GCGC 2 cut(s) 181, 353
AspS9I GGNCC 1 cut(s) 765
AsuHPI GGTGA 2 cut(s) 253, 695
BalI TGGCCA 1 cut(s) 653
BanI GGYRCC 2 cut(s) 7, 261
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 3 cut(s) 31, 203, 297
BccI CCATC 1 cut(s) 483
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BciT130I CCWGG 2 cut(s) 18, 396
BfaI CTAG 6 cut(s) 41, 74, 218, 288, 300, 317
BfmI CTRYAG 1 cut(s) 547
BisI GCNGC 3 cut(s) 45, 192, 311
BlpI GCTNAGC 1 cut(s) 704
BlsI GCNGC 3 cut(s) 46, 193, 312
Bme1390I CCNGG 2 cut(s) 18, 396
BmgT120I GGNCC 1 cut(s) 765
BmiI GGNNCC 2 cut(s) 9, 263
BmrFI CCNGG 2 cut(s) 18, 396
BmsI GCATC 1 cut(s) 659
BpiI GAAGAC 1 cut(s) 251
Bpu1102I GCTNAGC 1 cut(s) 704
BpuEI CTTGAG 1 cut(s) 14
BsaJI CCNNGG 3 cut(s) 16, 394, 761
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 360, 680
Bse1I ACTGG 1 cut(s) 626
BseBI CCWGG 2 cut(s) 18, 396
BseDI CCNNGG 3 cut(s) 16, 394, 761
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 3 cut(s) 17, 360, 680
BseNI ACTGG 1 cut(s) 626
BseXI GCAGC 3 cut(s) 31, 203, 297
Bsh1236I CGCG 1 cut(s) 351
BshFI GGCC 2 cut(s) 653, 766
BshNI GGYRCC 2 cut(s) 7, 261
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 3 cut(s) 17, 360, 680
BsmFI GGGAC 1 cut(s) 8
BsmI GAATGC 3 cut(s) 107, 341, 594
BsnI GGCC 2 cut(s) 653, 766
Bsp1407I TGTACA 1 cut(s) 502
Bsp143I GATC 3 cut(s) 168, 220, 250
Bsp1720I GCTNAGC 1 cut(s) 704
BspACI CCGC 3 cut(s) 349, 592, 623
BspANI GGCC 2 cut(s) 653, 766
BspFNI CGCG 1 cut(s) 351
BspLI GGNNCC 2 cut(s) 9, 263
BspPI GGATC 1 cut(s) 176
BspT107I GGYRCC 2 cut(s) 7, 261
BsrGI TGTACA 1 cut(s) 502
BsrI ACTGG 1 cut(s) 626
BssECI CCNNGG 3 cut(s) 16, 394, 761
BssMI GATC 3 cut(s) 168, 220, 250
BssT1I CCWWGG 1 cut(s) 761
Bst2UI CCWGG 2 cut(s) 18, 396
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 3 cut(s) 468, 503, 748
BstAUI TGTACA 1 cut(s) 502
BstC8I GCNNGC 3 cut(s) 148, 366, 384
BstDEI CTNAG 3 cut(s) 156, 704, 777
BstF5I GGATG 1 cut(s) 494
BstFNI CGCG 1 cut(s) 351
BstHHI GCGC 2 cut(s) 181, 353
BstKTI GATC 3 cut(s) 171, 223, 253
BstMBI GATC 3 cut(s) 168, 220, 250
BstMWI GCNNNNNNNGC 4 cut(s) 65, 74, 659, 700
BstNI CCWGG 2 cut(s) 18, 396
BstNSI RCATGY 5 cut(s) 382, 582, 703, 714, 755
BstSCI CCNGG 2 cut(s) 16, 394
BstSFI CTRYAG 1 cut(s) 547
BstUI CGCG 1 cut(s) 351
BstV1I GCAGC 3 cut(s) 31, 203, 297
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BsuRI GGCC 2 cut(s) 653, 766
BtgZI GCGATG 1 cut(s) 548
BtsCI GGATG 1 cut(s) 494
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 3 cut(s) 148, 366, 384
CfoI GCGC 2 cut(s) 181, 353
Cfr13I GGNCC 1 cut(s) 765
Csp6I GTAC 4 cut(s) 112, 262, 479, 503
CviAII CATG 7 cut(s) 238, 379, 418, 579, 700, 711, 752
CviQI GTAC 4 cut(s) 112, 262, 479, 503
DdeI CTNAG 3 cut(s) 156, 704, 777
DpnI GATC 3 cut(s) 170, 222, 252
DpnII GATC 3 cut(s) 168, 220, 250
EaeI YGGCCR 1 cut(s) 651
Eam1104I CTCTTC 3 cut(s) 468, 503, 748
EarI CTCTTC 3 cut(s) 468, 503, 748
Eco130I CCWWGG 1 cut(s) 761
Eco57I CTGAAG 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 437
EcoRII CCWGG 2 cut(s) 16, 394
EcoT14I CCWWGG 1 cut(s) 761
EcoT22I ATGCAT 2 cut(s) 341, 580
ErhI CCWWGG 1 cut(s) 761
FaeI CATG 7 cut(s) 241, 382, 421, 582, 703, 714, 755
FalI AAGNNNNNCTT 2 cut(s) 465, 497
FaqI GGGAC 1 cut(s) 8
FatI CATG 7 cut(s) 237, 378, 417, 578, 699, 710, 751
FauI CCCGC 1 cut(s) 356
Fnu4HI GCNGC 3 cut(s) 45, 192, 311
FokI GGATG 1 cut(s) 501
Fsp4HI GCNGC 3 cut(s) 45, 192, 311
FspBI CTAG 6 cut(s) 41, 74, 218, 288, 300, 317
GlaI GCGC 2 cut(s) 180, 352
GluI GCNGC 3 cut(s) 45, 192, 311
HaeIII GGCC 2 cut(s) 653, 766
HhaI GCGC 2 cut(s) 181, 353
Hin1II CATG 7 cut(s) 241, 382, 421, 582, 703, 714, 755
Hin6I GCGC 2 cut(s) 179, 351
HinP1I GCGC 2 cut(s) 179, 351
HindIII AAGCTT 1 cut(s) 615
HinfI GANTC 4 cut(s) 121, 514, 552, 635
HphI GGTGA 2 cut(s) 253, 695
Hpy166II GTNNAC 1 cut(s) 112
Hpy188III TCNNGA 2 cut(s) 218, 747
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 778
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4V TGCA 7 cut(s) 47, 59, 313, 339, 421, 578, 662
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 74, 659, 700
HpyF3I CTNAG 3 cut(s) 156, 704, 777
Hsp92II CATG 7 cut(s) 241, 382, 421, 582, 703, 714, 755
HspAI GCGC 2 cut(s) 179, 351
KpnI GGTACC 1 cut(s) 265
Kzo9I GATC 3 cut(s) 168, 220, 250
LmnI GCTCC 1 cut(s) 543
LpnPI CCDG 6 cut(s) 3, 30, 381, 407, 408, 639
Lsp1109I GCAGC 3 cut(s) 31, 203, 297
LweI GCATC 1 cut(s) 659
MaeI CTAG 6 cut(s) 41, 74, 218, 288, 300, 317
MaeIII GTNAC 1 cut(s) 553
MalI GATC 3 cut(s) 170, 222, 252
MboI GATC 3 cut(s) 168, 220, 250
MboII GAAGA 9 cut(s) 110, 256, 416, 485, 520, 582, 622, 698, 735
MfeI CAATTG 1 cut(s) 48
MflI RGATCY 1 cut(s) 168
MlsI TGGCCA 1 cut(s) 653
MluCI AATT 5 cut(s) 48, 54, 408, 437, 721
MluNI TGGCCA 1 cut(s) 653
MlyI GAGTC 3 cut(s) 130, 561, 644
MnlI CCTC 4 cut(s) 36, 457, 469, 504
Mox20I TGGCCA 1 cut(s) 653
Mph1103I ATGCAT 2 cut(s) 341, 580
MroXI GAANNNNTTC 1 cut(s) 408
MscI TGGCCA 1 cut(s) 653
MseI TTAA 4 cut(s) 357, 459, 602, 735
Msp20I TGGCCA 1 cut(s) 653
MspR9I CCNGG 2 cut(s) 18, 396
MunI CAATTG 1 cut(s) 48
Mva1269I GAATGC 3 cut(s) 107, 341, 594
MvaI CCWGG 2 cut(s) 18, 396
MvnI CGCG 1 cut(s) 351
MwoI GCNNNNNNNGC 4 cut(s) 65, 74, 659, 700
NdeII GATC 3 cut(s) 168, 220, 250
NlaIII CATG 7 cut(s) 241, 382, 421, 582, 703, 714, 755
NlaIV GGNNCC 2 cut(s) 9, 263
NmuCI GTSAC 1 cut(s) 553
NsiI ATGCAT 2 cut(s) 341, 580
NspI RCATGY 5 cut(s) 382, 582, 703, 714, 755
PctI GAATGC 3 cut(s) 107, 341, 594
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 1 cut(s) 514
PflMI CCANNNNNTGG 1 cut(s) 17
PkrI GCNGC 3 cut(s) 46, 193, 312
PleI GAGTC 3 cut(s) 129, 560, 643
PpsI GAGTC 3 cut(s) 129, 560, 643
Psp6I CCWGG 2 cut(s) 16, 394
PspGI CCWGG 2 cut(s) 16, 394
PspN4I GGNNCC 2 cut(s) 9, 263
PspPI GGNCC 1 cut(s) 765
PsuI RGATCY 1 cut(s) 168
RsaI GTAC 4 cut(s) 113, 263, 480, 504
RsaNI GTAC 4 cut(s) 112, 262, 479, 503
SaqAI TTAA 4 cut(s) 357, 459, 602, 735
SatI GCNGC 3 cut(s) 45, 192, 311
Sau3AI GATC 3 cut(s) 168, 220, 250
Sau96I GGNCC 1 cut(s) 765
SchI GAGTC 3 cut(s) 130, 561, 644
ScrFI CCNGG 2 cut(s) 18, 396
SfaNI GCATC 1 cut(s) 659
SfcI CTRYAG 1 cut(s) 547
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 5 cut(s) 48, 54, 408, 437, 721
SsiI CCGC 3 cut(s) 349, 592, 623
SspMI CTAG 6 cut(s) 41, 74, 218, 288, 300, 317
StyD4I CCNGG 2 cut(s) 16, 394
StyI CCWWGG 1 cut(s) 761
TaaI ACNGT 1 cut(s) 529
TaqI TCGA 1 cut(s) 471
TasI AATT 5 cut(s) 48, 54, 408, 437, 721
TatI WGTACW 2 cut(s) 111, 502
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 4 cut(s) 357, 459, 602, 735
Tru9I TTAA 4 cut(s) 357, 459, 602, 735
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 3 cut(s) 44, 191, 310
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 2 cut(s) 17, 102
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 1 cut(s) 66
Van91I CCANNNNNTGG 1 cut(s) 17
XapI RAATTY 3 cut(s) 408, 437, 721
XbaI TCTAGA 1 cut(s) 217
XceI RCATGY 5 cut(s) 382, 582, 703, 714, 755
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 6 cut(s) 41, 74, 218, 288, 300, 317
Zsp2I ATGCAT 2 cut(s) 341, 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.