Rw0G001000

Uncharacterized protein K02A2.6-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00031
Physical Location & Seq
Reverse (-)
21361 .. 22665
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001000.1

Sequence Viewer

Length: 1038 bp
ATGGATCCATTTATCCACTACCTCCTCAAGGGTATCGAGCCCCAGGACAAGATTGTCGCCACAAGGCTCCGCAGAAGAGCAACGCTATACACGATGCGAGAAGGCAAACTGTACAGGAAGGGAAGGTCATTCCCCCTGTTAAGGTACATCTCCCTCGAAAAGGGACAGCGAGTCTTGCTATCGCTGCATAGCGGAGTTTGCGGTAACCACGCGGGCGTGAGAAACCTGGAATTTAAGGGCCTACGTATGGGATACGATTGGCCTATAATCGAGCAAGACACGAAGCGTATCGCTAGCGCCTGCCTTAAGTGCCACCAATTCGCCAACTCTCCTCTTGCACCATCGGACTTTGTTGGCCAGTACGGCACGCAGATCCGATATGCCTCTCCCACACACCCACAGACAAATGGCCAAGTCGAAGCTGTGAATAAGATAATCAAGCAGAACTTAAAGAAGAGGCTCGAACACCCCAAGGGCTTATGGGCCGCAAAACTCCCCGAGGTGCTATGGGCGATAAGAACGACCCCGACAGAGGCCAATGGCGAGTCCCCTTTCTGCTTGTCATTCGGCACCGAGGCCATGATCCCTGTTGAGCAGGAGGTACATAGCGAGAGGGTCGCATCTTTCGACCCACTCACCAACTCGGAATGGTTGAACCTCGACTCTGACCTCTTGGAAGAAAGCCACGAGCGAGCCCACCTCAGGAATATCAATAACAAGCAGCGTATCGCTAGCTATTATAATGCCAGAGTCCTACCTCTCCTCCTCTCCGTAGGGGACTGGGTAATGAAGGAGAAGATGCCAACCCCAATGGGGCTCAAGGCCACCTGGGGAGGGCCATACGAAATCATCGAGGCCGTCGGACCCGCTACCTTCTACTTGAGGGGAATAGATGGTATCACCATCCCACATCCGTGGAATGCCCAACATCTTCGATACTACCCCAAATTGAGCAAGGGATCCAAACTCGCCTCCACAGCGCTATCACAACCCCCTATGCTTGTAAGCGTCAATATTATCTCCTTTTACCTTTCTTAG

Protein Analysis

345

Amino Acids

39.05

Weight (kDa)

9.47

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica Prupe.6G166700_v2.0.a1
pyrus_communis pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis RchiOBHm_Chr5g0018261
rosa_laevigata RLG00000022447
rosa_multiflora Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa Rorug02G0381000
rosa_samantha Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 741
AasI GACNNNNNNGTC 1 cut(s) 53
AccB1I GGYRCC 1 cut(s) 569
AccII CGCG 1 cut(s) 212
AciI CCGC 6 cut(s) 70, 192, 201, 212, 486, 867
AclWI GGATC 5 cut(s) 12, 367, 577, 954, 967
AcoI YGGCCR 2 cut(s) 355, 409
AcsI RAATTY 1 cut(s) 230
AfaI GTAC 4 cut(s) 113, 146, 362, 603
AfeI AGCGCT 1 cut(s) 981
AfiI CCNNNNNNNGG 8 cut(s) 28, 141, 160, 247, 532, 702, 813, 834
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 1 cut(s) 655
AhdI GACNNNNNGTC 1 cut(s) 170
AjnI CCWGG 3 cut(s) 42, 225, 827
AleI CACNNNNGTG 1 cut(s) 913
AluBI AGCT 2 cut(s) 422, 735
AluI AGCT 2 cut(s) 422, 735
AlwI GGATC 5 cut(s) 12, 367, 577, 954, 967
Ama87I CYCGRG 1 cut(s) 497
Aor51HI AGCGCT 1 cut(s) 981
ApeKI GCWGC 2 cut(s) 184, 721
ApoI RAATTY 1 cut(s) 230
AspLEI GCGC 2 cut(s) 299, 982
AspS9I GGNCC 4 cut(s) 238, 483, 836, 863
AsuHPI GGTGA 2 cut(s) 628, 892
AsuNHI GCTAGC 2 cut(s) 293, 731
AvaI CYCGRG 1 cut(s) 497
AvaII GGWCC 1 cut(s) 863
AxyI CCTNAGG 1 cut(s) 701
BalI TGGCCA 2 cut(s) 357, 411
BamHI GGATCC 2 cut(s) 4, 959
BanI GGYRCC 1 cut(s) 569
BanII GRGCYC 3 cut(s) 42, 697, 819
BauI CACGAG 1 cut(s) 686
BbvI GCAGC 2 cut(s) 171, 733
BccI CCATC 3 cut(s) 349, 887, 911
BceAI ACGGC 2 cut(s) 379, 842
BciT130I CCWGG 3 cut(s) 44, 227, 829
BciVI GTATCC 1 cut(s) 245
BfaI CTAG 2 cut(s) 294, 732
BfoI RGCGCY 2 cut(s) 300, 983
BfrI CTTAAG 1 cut(s) 305
BfuI GTATCC 1 cut(s) 245
BglI GCCNNNNNGGC 1 cut(s) 363
BisI GCNGC 3 cut(s) 185, 486, 722
BlsI GCNGC 3 cut(s) 186, 487, 723
Bme1390I CCNGG 3 cut(s) 44, 227, 829
Bme18I GGWCC 1 cut(s) 863
BmeRI GACNNNNNGTC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 497
BmgT120I GGNCC 4 cut(s) 238, 483, 836, 863
BmiI GGNNCC 5 cut(s) 6, 68, 571, 865, 961
BmrFI CCNGG 3 cut(s) 44, 227, 829
BmrI ACTGGG 1 cut(s) 790
BmsI GCATC 3 cut(s) 84, 629, 789
BmtI GCTAGC 2 cut(s) 297, 735
BmuI ACTGGG 1 cut(s) 790
BplI GAGNNNNNCTC 2 cut(s) 684, 716
BpuEI CTTGAG 3 cut(s) 11, 803, 901
BsaAI YACGTR 1 cut(s) 245
BsaJI CCNNGG 6 cut(s) 42, 471, 498, 573, 828, 914
BsaXI ACNNNNNCTCC 2 cut(s) 747, 777
Bsc4I CCNNNNNNNGG 8 cut(s) 28, 141, 160, 247, 532, 702, 813, 834
Bse1I ACTGG 2 cut(s) 358, 785
Bse21I CCTNAGG 1 cut(s) 701
BseBI CCWGG 3 cut(s) 44, 227, 829
BseDI CCNNGG 6 cut(s) 42, 471, 498, 573, 828, 914
BseGI GGATG 2 cut(s) 903, 910
BseLI CCNNNNNNNGG 8 cut(s) 28, 141, 160, 247, 532, 702, 813, 834
BseMII CTCAG 1 cut(s) 715
BseNI ACTGG 2 cut(s) 358, 785
BseRI GAGGAG 4 cut(s) 14, 321, 752, 755
BseXI GCAGC 2 cut(s) 171, 733
Bsh1236I CGCG 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 569
BsiHKCI CYCGRG 1 cut(s) 497
BslFI GGGAC 3 cut(s) 177, 532, 791
BslI CCNNNNNNNGG 8 cut(s) 28, 141, 160, 247, 532, 702, 813, 834
BsmFI GGGAC 3 cut(s) 177, 532, 791
BsmI GAATGC 1 cut(s) 925
BsoBI CYCGRG 1 cut(s) 497
Bsp1286I GDGCHC 3 cut(s) 42, 697, 819
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 4 cut(s) 4, 372, 582, 959
BspACI CCGC 6 cut(s) 70, 192, 201, 212, 486, 867
BspCNI CTCAG 1 cut(s) 714
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 5 cut(s) 6, 68, 571, 865, 961
BspOI GCTAGC 2 cut(s) 297, 735
BspPI GGATC 5 cut(s) 12, 367, 577, 954, 967
BspQI GCTCTTC 1 cut(s) 70
BspT107I GGYRCC 1 cut(s) 569
BspTI CTTAAG 1 cut(s) 305
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 2 cut(s) 358, 785
BssECI CCNNGG 6 cut(s) 42, 471, 498, 573, 828, 914
BssMI GATC 4 cut(s) 4, 372, 582, 959
BssSI CACGAG 1 cut(s) 686
BssT1I CCWWGG 1 cut(s) 471
Bst2BI CACGAG 1 cut(s) 686
Bst2UI CCWGG 3 cut(s) 44, 227, 829
Bst4CI ACNGT 1 cut(s) 111
Bst6I CTCTTC 2 cut(s) 70, 449
BstAFI CTTAAG 1 cut(s) 305
BstAUI TGTACA 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 245
BstC8I GCNNGC 6 cut(s) 214, 295, 301, 368, 693, 733
BstDEI CTNAG 2 cut(s) 701, 1035
BstDSI CCRYGG 1 cut(s) 914
BstEII GGTNACC 1 cut(s) 203
BstENI CCTNNNNNAGG 2 cut(s) 26, 158
BstF5I GGATG 2 cut(s) 903, 910
BstFNI CGCG 1 cut(s) 212
BstH2I RGCGCY 2 cut(s) 300, 983
BstHHI GCGC 2 cut(s) 299, 982
BstKTI GATC 4 cut(s) 7, 375, 585, 962
BstMBI GATC 4 cut(s) 4, 372, 582, 959
BstMWI GCNNNNNNNGC 6 cut(s) 175, 184, 198, 309, 363, 977
BstNI CCWGG 3 cut(s) 44, 227, 829
BstPI GGTNACC 1 cut(s) 203
BstSCI CCNGG 3 cut(s) 42, 225, 827
BstSNI TACGTA 1 cut(s) 245
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 2 cut(s) 171, 733
BstX2I RGATCY 3 cut(s) 4, 372, 959
BstXI CCANNNNNNTGG 1 cut(s) 915
BstYI RGATCY 3 cut(s) 4, 372, 959
Bsu36I CCTNAGG 1 cut(s) 701
BsuI GTATCC 1 cut(s) 245
BtgI CCRYGG 1 cut(s) 914
BtsCI GGATG 2 cut(s) 903, 910
Cac8I GCNNGC 6 cut(s) 214, 295, 301, 368, 693, 733
CfoI GCGC 2 cut(s) 299, 982
Cfr13I GGNCC 4 cut(s) 238, 483, 836, 863
CseI GACGC 1 cut(s) 997
Csp6I GTAC 4 cut(s) 112, 145, 361, 602
CviAII CATG 1 cut(s) 580
CviQI GTAC 4 cut(s) 112, 145, 361, 602
DdeI CTNAG 2 cut(s) 701, 1035
DpnI GATC 4 cut(s) 6, 374, 584, 961
DpnII GATC 4 cut(s) 4, 372, 582, 959
DrdI GACNNNNNNGTC 1 cut(s) 53
DriI GACNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 53
EaeI YGGCCR 2 cut(s) 355, 409
Eam1104I CTCTTC 2 cut(s) 70, 449
Eam1105I GACNNNNNGTC 1 cut(s) 170
EarI CTCTTC 2 cut(s) 70, 449
Eco105I TACGTA 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 471
Eco24I GRGCYC 3 cut(s) 42, 697, 819
Eco47I GGWCC 1 cut(s) 863
Eco47III AGCGCT 1 cut(s) 981
Eco81I CCTNAGG 1 cut(s) 701
Eco88I CYCGRG 1 cut(s) 497
Eco91I GGTNACC 1 cut(s) 203
EcoNI CCTNNNNNAGG 2 cut(s) 26, 158
EcoO109I RGGNCCY 1 cut(s) 238
EcoO65I GGTNACC 1 cut(s) 203
EcoRII CCWGG 3 cut(s) 42, 225, 827
EcoT14I CCWWGG 1 cut(s) 471
EcoT38I GRGCYC 3 cut(s) 42, 697, 819
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 1 cut(s) 583
FalI AAGNNNNNCTT 2 cut(s) 431, 463
FaqI GGGAC 3 cut(s) 177, 532, 791
FatI CATG 1 cut(s) 579
FauI CCCGC 2 cut(s) 205, 874
Fnu4HI GCNGC 3 cut(s) 185, 486, 722
FokI GGATG 2 cut(s) 890, 897
FriOI GRGCYC 3 cut(s) 42, 697, 819
Fsp4HI GCNGC 3 cut(s) 185, 486, 722
FspBI CTAG 2 cut(s) 294, 732
GlaI GCGC 2 cut(s) 298, 981
GluI GCNGC 3 cut(s) 185, 486, 722
HaeII RGCGCY 2 cut(s) 300, 983
HgaI GACGC 1 cut(s) 997
HhaI GCGC 2 cut(s) 299, 982
Hin1II CATG 1 cut(s) 583
Hin6I GCGC 2 cut(s) 297, 980
HinP1I GCGC 2 cut(s) 297, 980
HinfI GANTC 4 cut(s) 171, 545, 662, 750
HphI GGTGA 2 cut(s) 628, 892
Hpy188I TCNGA 5 cut(s) 346, 377, 646, 667, 863
Hpy188III TCNNGA 1 cut(s) 703
Hpy99I CGWCG 1 cut(s) 863
HpyAV CCTTC 5 cut(s) 95, 112, 117, 784, 883
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 2 cut(s) 187, 338
HpyF10VI GCNNNNNNNGC 6 cut(s) 175, 184, 198, 309, 363, 977
HpyF3I CTNAG 2 cut(s) 701, 1035
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 1 cut(s) 583
HspAI GCGC 2 cut(s) 297, 980
Kzo9I GATC 4 cut(s) 4, 372, 582, 959
LguI GCTCTTC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 72
Lsp1109I GCAGC 2 cut(s) 171, 733
LweI GCATC 3 cut(s) 84, 629, 789
MaeI CTAG 2 cut(s) 294, 732
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 1 cut(s) 203
MalI GATC 4 cut(s) 6, 374, 584, 961
MboI GATC 4 cut(s) 4, 372, 582, 959
MboII GAAGA 5 cut(s) 87, 466, 689, 808, 923
MflI RGATCY 3 cut(s) 4, 372, 959
MhlI GDGCHC 3 cut(s) 42, 697, 819
MlsI TGGCCA 2 cut(s) 357, 411
MluCI AATT 3 cut(s) 230, 317, 947
MluNI TGGCCA 2 cut(s) 357, 411
MlyI GAGTC 4 cut(s) 180, 554, 656, 759
MmeI TCCRAC 1 cut(s) 841
Mox20I TGGCCA 2 cut(s) 357, 411
MscI TGGCCA 2 cut(s) 357, 411
MseI TTAA 4 cut(s) 140, 234, 306, 449
MslI CAYNNNNRTG 1 cut(s) 913
Msp20I TGGCCA 2 cut(s) 357, 411
MspCI CTTAAG 1 cut(s) 305
MspR9I CCNGG 3 cut(s) 44, 227, 829
Mva1269I GAATGC 1 cut(s) 925
MvaI CCWGG 3 cut(s) 44, 227, 829
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 6 cut(s) 175, 184, 198, 309, 363, 977
NdeII GATC 4 cut(s) 4, 372, 582, 959
NheI GCTAGC 2 cut(s) 293, 731
NlaIII CATG 1 cut(s) 583
NlaIV GGNNCC 5 cut(s) 6, 68, 571, 865, 961
OliI CACNNNNGTG 1 cut(s) 913
PciSI GCTCTTC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 3 cut(s) 89, 624, 849
PctI GAATGC 1 cut(s) 925
PkrI GCNGC 3 cut(s) 186, 487, 723
PleI GAGTC 4 cut(s) 179, 553, 656, 758
PpsI GAGTC 4 cut(s) 179, 553, 656, 758
Ppu21I YACGTR 1 cut(s) 245
PsiI TTATAA 1 cut(s) 741
Psp6I CCWGG 3 cut(s) 42, 225, 827
PspEI GGTNACC 1 cut(s) 203
PspGI CCWGG 3 cut(s) 42, 225, 827
PspN4I GGNNCC 5 cut(s) 6, 68, 571, 865, 961
PspPI GGNCC 4 cut(s) 238, 483, 836, 863
PsuI RGATCY 3 cut(s) 4, 372, 959
RsaI GTAC 4 cut(s) 113, 146, 362, 603
RsaNI GTAC 4 cut(s) 112, 145, 361, 602
RseI CAYNNNNRTG 1 cut(s) 913
SapI GCTCTTC 1 cut(s) 70
SaqAI TTAA 4 cut(s) 140, 234, 306, 449
SatI GCNGC 3 cut(s) 185, 486, 722
Sau3AI GATC 4 cut(s) 4, 372, 582, 959
Sau96I GGNCC 4 cut(s) 238, 483, 836, 863
SchI GAGTC 4 cut(s) 180, 554, 656, 759
ScrFI CCNGG 3 cut(s) 44, 227, 829
SduI GDGCHC 3 cut(s) 42, 697, 819
SfaNI GCATC 3 cut(s) 84, 629, 789
SinI GGWCC 1 cut(s) 863
SmiMI CAYNNNNRTG 1 cut(s) 913
SmlI CTYRAG 4 cut(s) 26, 305, 818, 880
SmoI CTYRAG 4 cut(s) 26, 305, 818, 880
SnaBI TACGTA 1 cut(s) 245
Sse9I AATT 3 cut(s) 230, 317, 947
SsiI CCGC 6 cut(s) 70, 192, 201, 212, 486, 867
SspI AATATT 1 cut(s) 1015
SspMI CTAG 2 cut(s) 294, 732
StyD4I CCNGG 3 cut(s) 42, 225, 827
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 1 cut(s) 111
TaiI ACGT 1 cut(s) 247
TaqI TCGA 9 cut(s) 36, 156, 270, 417, 462, 627, 660, 852, 934
TasI AATT 3 cut(s) 230, 317, 947
TatI WGTACW 1 cut(s) 111
TauI GCSGC 1 cut(s) 488
Tru1I TTAA 4 cut(s) 140, 234, 306, 449
Tru9I TTAA 4 cut(s) 140, 234, 306, 449
TseI GCWGC 2 cut(s) 184, 721
TspDTI ATGAA 1 cut(s) 803
TspGWI ACGGA 2 cut(s) 760, 903
Vha464I CTTAAG 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 863
XagI CCTNNNNNAGG 2 cut(s) 26, 158
XapI RAATTY 1 cut(s) 230
XspI CTAG 2 cut(s) 294, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.