Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012722.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

90 .. 437

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012722.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgttgcacgtagctactaaccctctgttggacagatacgaggatcccagggccaataccgacctagacgaagaacggcccggtgccgtagaagacattgaagaagtggtgctatcagagcagttcccggacagaactgttaggattggtacaaggctgtctcctgttgtaagggaaggattattctcgtttctccactccaacacatccgcgttcgcttggtcctatgaggacatgcccgggataccgccagaagtagccacgcacaatcttagtatcgttccttactcaacaccggtaagacaaaagcgaagggccttcacacacgataagtaccgggctatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

115

Amino Acids

13.15

Weight (kDa)

5.29

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccII	CGCG	1 cut(s)	212
AciI	CCGC	2 cut(s)	210, 248
AclWI	GGATC	2 cut(s)	38, 51
AfaI	GTAC	2 cut(s)	151, 335
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgeI	ACCGGT	1 cut(s)	295
AgsI	TTSAA	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	2 cut(s)	38, 51
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	3 cut(s)	51, 77, 315
AsiGI	ACCGGT	1 cut(s)	295
AspS9I	GGNCC	4 cut(s)	51, 78, 222, 315
AsuC2I	CCSGG	5 cut(s)	81, 128, 240, 241, 338
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	83
BbsI	GAAGAC	1 cut(s)	99
BceAI	ACGGC	2 cut(s)	71, 92
BciT130I	CCWGG	1 cut(s)	49
BciVI	GTATCC	1 cut(s)	237
BcnI	CCSGG	5 cut(s)	81, 128, 240, 241, 338
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	2 cut(s)	65, 346
BfuI	GTATCC	1 cut(s)	237
Bme1390I	CCNGG	6 cut(s)	49, 81, 128, 240, 241, 338
Bme18I	GGWCC	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	4 cut(s)	51, 78, 222, 315
BmiI	GGNNCC	2 cut(s)	45, 85
BmrFI	CCNGG	6 cut(s)	49, 81, 128, 240, 241, 338
BpiI	GAAGAC	1 cut(s)	99
BpuMI	CCSGG	5 cut(s)	81, 128, 240, 241, 338
BsaAI	YACGTR	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	47, 48, 239
BsaWI	WCCGGW	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse118I	RCCGGY	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	49
BseDI	CCNNGG	3 cut(s)	47, 48, 239
BseGI	GGATG	1 cut(s)	206
BseLI	CCNNNNNNNGG	1 cut(s)	28
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	3 cut(s)	53, 79, 317
BshNI	GGYRCC	1 cut(s)	83
BshTI	ACCGGT	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	5 cut(s)	81, 128, 240, 296, 337
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	165
BsnI	GGCC	3 cut(s)	53, 79, 317
BsoBI	CYCGRG	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	2 cut(s)	210, 248
BspANI	GGCC	3 cut(s)	53, 79, 317
BspFNI	CGCG	1 cut(s)	212
BspLI	GGNNCC	2 cut(s)	45, 85
BspPI	GGATC	2 cut(s)	38, 51
BspT107I	GGYRCC	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	3 cut(s)	47, 48, 239
BssMI	GATC	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	139
BstBAI	YACGTR	1 cut(s)	10
BstDEI	CTNAG	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	206
BstFNI	CGCG	1 cut(s)	212
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNI	CCWGG	1 cut(s)	49
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	6 cut(s)	47, 79, 126, 238, 239, 336
BstUI	CGCG	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	53, 79, 317
BtsCI	GGATG	1 cut(s)	206
Cfr10I	RCCGGY	1 cut(s)	295
Cfr13I	GGNCC	4 cut(s)	51, 78, 222, 315
Cfr9I	CCCGGG	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	150, 334
CspAI	ACCGGT	1 cut(s)	295
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	7 cut(s)	14, 53, 79, 157, 260, 317, 341
CviKI_1	RGCY	7 cut(s)	14, 53, 79, 157, 260, 317, 341
CviQI	GTAC	2 cut(s)	150, 334
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	47
FaeI	CATG	1 cut(s)	238
FaiI	YATR	2 cut(s)	228, 236
FatI	CATG	1 cut(s)	234
FokI	GGATG	1 cut(s)	193
FspBI	CTAG	2 cut(s)	65, 346
HaeIII	GGCC	3 cut(s)	53, 79, 317
HapII	CCGG	5 cut(s)	81, 128, 240, 296, 337
Hin1II	CATG	1 cut(s)	238
HpaII	CCGG	5 cut(s)	81, 128, 240, 296, 337
Hpy188I	TCNGA	1 cut(s)	118
HpyAV	CCTTC	3 cut(s)	170, 306, 328
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	1 cut(s)	272
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	8 cut(s)	34, 61, 94, 141, 177, 253, 264, 309
MaeI	CTAG	2 cut(s)	65, 346
MaeII	ACGT	1 cut(s)	9
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	3 cut(s)	83, 104, 113
MflI	RGATCY	1 cut(s)	43
MmeI	TCCRAC	2 cut(s)	9, 225
MnlI	CCTC	3 cut(s)	33, 34, 223
MspI	CCGG	5 cut(s)	81, 128, 240, 296, 337
MspR9I	CCNGG	6 cut(s)	49, 81, 128, 240, 241, 338
MvaI	CCWGG	1 cut(s)	49
MvnI	CGCG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	118
NciI	CCSGG	5 cut(s)	81, 128, 240, 241, 338
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	2 cut(s)	45, 85
NspI	RCATGY	1 cut(s)	238
PasI	CCCWGGG	1 cut(s)	48
PfoI	TCCNGGA	1 cut(s)	126
PinAI	ACCGGT	1 cut(s)	295
Ppu21I	YACGTR	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	45, 85
PspPI	GGNCC	4 cut(s)	51, 78, 222, 315
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	2 cut(s)	151, 335
RsaNI	GTAC	2 cut(s)	150, 334
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	4 cut(s)	51, 78, 222, 315
ScrFI	CCNGG	6 cut(s)	49, 81, 128, 240, 241, 338
SetI	ASST	3 cut(s)	12, 16, 66
SinI	GGWCC	1 cut(s)	222
SmaI	CCCGGG	1 cut(s)	241
SsiI	CCGC	2 cut(s)	210, 248
SspMI	CTAG	2 cut(s)	65, 346
StyD4I	CCNGG	6 cut(s)	47, 79, 126, 238, 239, 336
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	12
TspMI	CCCGGG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	222
XceI	RCATGY	1 cut(s)	238
XmaI	CCCGGG	1 cut(s)	239
XspI	CTAG	2 cut(s)	65, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.