Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00633

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

13009 .. 15482

Gene Structure 2474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G014090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2184 bp

ATGCGGCTTAACCCACAGAAGTGCATCTTCGGGGTCGAGGTAGGAAAGTTTCTCGGGCACATCATTAGCCACAGGGGAATTGAGGCCAATCCGGAGAAGGTGCAGGCTATATTAGACATGGTGTCCCCAACCTACCGAAACGAGGTCCAATCTCTTATAGGCAAGGTGGCCGCCCTGTCAAGATTCATCTCCAGGCTGACGGACAAGTGTACTCCTTTCTTCAAATTGTTAAAAACCCAGCACGTCGAGATGATAGCCTGGACAGCGGAGCACGAGGCTGCTTTCCTTGGCTTGAAGGCATACTTGTCAGAGGTACCTCTACTCTACAAACCTGTTCTCGGAGAGATGCTCTACGTATATCTGGCGGCATCGTCAACTGCTGTGAGCTCAGTCATGATTAGGAAGGACTCCGATTGCGAGTACCCAGTGTACTACGCTGGACAAGGTTACACTAGTGCAGAATCCAGGTACCCGGACATTGAAAAAGTGGCACTGGCTCTCCTGGTATCAGCCCGGAAGCTCAGACATTACTTCCAAGCACACTCAATCACCGTTTTCACTAATCACCCATTAAGGCAGGTTTTGCAGAAACCAGAGACATCGGGCAGGTTAATTAAATGGGCCATCGAGCTGGGGGAGTTCGATATCAAGTACCAGCCCCGGACAGCCATCAAGGGCCAGGCAGCGGCAGATTTTATTTCAGAATCAATCCCCTCCCATAACCCAAACCAGGAATCACCTGAACCACTAGCCGCAGATCCACCTCCGCCAAGCACTTGGCGATTATACGTTGATGGAGCATCCAACAAGAAAACCAGCGGAGCCGGCATCTTGCTAATTAGCCCGGACGATCAAGTCAGCGGTAACTTCGAGGCAAAGGAGCCCCACATGTCCTCCTACCAGGCCTTGGCCTGGGCATTAGTTCAGAGGTTTACCTCCTACTTTTTTACCCAAATACCGAGGGCAGAAAACGACAAGGCAGACGCCCTTGCTAAGCTCGCATCAACTTCTCCAAACCCTACCTATGGGGCCACAAAGGTCGAAATACTCGCGGGACCTAGCACTTCTAAGACGGTGTCAGAAATATTTGTGGTGAGTCACACAGCTTCATGGATGGACCCAATTTTGAAATACATGGTCGACGGCCTAGCACCGGATGATAAGGTCGAGGGCAGAAGACTACAGCTAAGAAGAGGGCATTGCTTTCCCAACCTGAAGTGTGTAACACCGGAGGAAGGTCACAAAATAATGAAGGACATTCATGCTGGTGTATGTGGTAACCATGTCGGAGTCCGATCTCTTGCACACAAGACCCTAAGGGCAGGATACTTCTGGCCTACCATGTCGGCCCTGTGGGGTTTGGACTTGATTGGTAAACTTCCCACAGCAGTGGGACAGTTCAAATACTCCATTGTTGCAGTGGACTACGAAAAAAAGTGGGTGGAGGCAGAACCTCTCGTCGCCATCACCACGGAAAAGGTCAAAAGCTTCCTATGGAAGAACATCTACTGCAGGTTTGGAGTCCCGGATACCATAGTCACGGACAATGGTACCCAGTTTGACAATGATGAGTTGAGAGCTTACACACAGAACCTGGGCACTAAGATCCTCTATGCTTCCCCGGCTCACCCCCAGACCAACGGTCAGGTCGAAGCTGTCAACAAGATACTCAAGAAAATACTGAAAAAGAAGCTTGACGAAGCCAAGGGTCTTTGGGCTGCTAAACTCCCGGAGGTGTTGTGGACTATCAGGACCACGACAACGGAGGCCACCGGAGAGACCCCTTTCTGCATGGCTTTTGGATCAGAAGCAGTACTCCCTATTGAAACACAAATCCAAAGTCCCCGGATCGAATACTTCGATGCGGGTACCAACTCAGAAGGCCTACACCTCGATGCTGATTTACTCGAGGAACGAAGAGATGTGGCACACATGCATAACTTGGCAAACAAGCGGAGGATAGCTCGTTACTACGATGCCAAGGTACAGTCCCGGACAGTAAAGTTGGGGGACTGGGTCATGAAGCAAGTCTACCCAGAGCCCCGGGGACTGGATCCATCCTGGACAGGCCCTTACAAGATCATTGAAGAGGTAGGCCCCGCAACCTTTTCCATCAGGGACATGAACGGGGTCGTTTCCAGGCATCCATGGAATACCCAGCGCCTGTGGTACTATTACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

727

Amino Acids

81.55

Weight (kDa)

8.73

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	87 - 185	3.1e-17	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	117 - 214	1.8e-17	RNase H-like domain found in reverse transcriptase
rve	PF00665	451 - 544	7.8e-10	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	854
Acc36I	ACCTGC	3 cut(s)	568, 597, 1503
Acc65I	GGTACC	4 cut(s)	313, 468, 1550, 1868
AccB1I	GGYRCC	4 cut(s)	313, 468, 1550, 1868
AccB7I	CCANNNNNTGG	1 cut(s)	907
AccI	GTMKAC	2 cut(s)	1140, 2031
AccII	CGCG	1 cut(s)	1052
AccIII	TCCGGA	1 cut(s)	91
AclWI	GGATC	6 cut(s)	752, 1600, 1810, 1856, 2048, 2061
AcoI	YGGCCR	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	1235
AcyI	GRCGYC	1 cut(s)	984
AflIII	ACRYGT	1 cut(s)	888
AgsI	TTSAA	7 cut(s)	223, 295, 482, 1129, 1402, 1826, 2087
AhdI	GACNNNNNGTC	2 cut(s)	121, 1641
AhlI	ACTAGT	1 cut(s)	452
AjiI	CACGTC	1 cut(s)	244
AleI	CACNNNNGTG	2 cut(s)	19, 1388
Alw21I	GWGCWC	2 cut(s)	273, 389
Alw26I	GTCTC	2 cut(s)	590, 1772
AlwI	GGATC	6 cut(s)	752, 1600, 1810, 1856, 2048, 2061
AlwNI	CAGNNNCTG	2 cut(s)	1594, 2164
Ama87I	CYCGRG	3 cut(s)	53, 1907, 2043
Aor13HI	TCCGGA	1 cut(s)	91
ApeKI	GCWGC	3 cut(s)	278, 683, 1718
ArsI	GACNNNNNNTTYG	2 cut(s)	1825, 1857
Asp718I	GGTACC	4 cut(s)	313, 468, 1550, 1868
AspLEI	GCGC	1 cut(s)	2163
AsuHPI	GGTGA	6 cut(s)	541, 557, 729, 1105, 1459, 1619
AvaI	CYCGRG	3 cut(s)	53, 1907, 2043
AvaII	GGWCC	4 cut(s)	145, 1055, 1117, 1752
AxyI	CCTNAGG	1 cut(s)	1316
BaeGI	GKGCMC	2 cut(s)	60, 1601
BaeI	ACNNNNGTAYC	4 cut(s)	1521, 1534, 1554, 1567
BamHI	GGATCC	1 cut(s)	2053
BanI	GGYRCC	4 cut(s)	313, 468, 1550, 1868
BanII	GRGCYC	3 cut(s)	389, 885, 2043
BarI	GAAGNNNNNNTAC	4 cut(s)	1490, 1522, 2015, 2047
BauI	CACGAG	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	1183
Bbv12I	GWGCWC	2 cut(s)	273, 389
BbvI	GCAGC	3 cut(s)	265, 695, 1705
BccI	CCATC	7 cut(s)	632, 677, 788, 1108, 1472, 2065, 2120
BceAI	ACGGC	1 cut(s)	1159
BciVI	GTATCC	2 cut(s)	1319, 1522
BcoDI	GTCTC	2 cut(s)	590, 1772
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	4 cut(s)	453, 749, 1059, 1148
BfmI	CTRYAG	2 cut(s)	1181, 1510
BfoI	RGCGCY	1 cut(s)	2164
BfuAI	ACCTGC	3 cut(s)	568, 597, 1503
BfuI	GTATCC	2 cut(s)	1319, 1522
BisI	GCNGC	8 cut(s)	5, 171, 279, 366, 684, 687, 753, 1719
BlpI	GCTNAGC	1 cut(s)	993
BlsI	GCNGC	8 cut(s)	6, 172, 280, 367, 685, 688, 754, 1720
BmcAI	AGTACT	1 cut(s)	1815
Bme18I	GGWCC	4 cut(s)	145, 1055, 1117, 1752
BmeRI	GACNNNNNGTC	2 cut(s)	121, 1641
BmeT110I	CYCGRG	3 cut(s)	53, 1907, 2043
BmgBI	CACGTC	1 cut(s)	244
BmrI	ACTGGG	3 cut(s)	419, 1549, 2023
BmuI	ACTGGG	3 cut(s)	419, 1549, 2023
BpiI	GAAGAC	1 cut(s)	1183
BplI	GAGNNNNNCTC	4 cut(s)	333, 365, 1948, 1980
BpmI	CTGGAG	1 cut(s)	175
Bpu1102I	GCTNAGC	1 cut(s)	993
BpuEI	CTTGAG	1 cut(s)	1655
BsaAI	YACGTR	1 cut(s)	355
BsaHI	GRCGYC	1 cut(s)	984
BsaI	GGTCTC	1 cut(s)	1772
BsaWI	WCCGGW	4 cut(s)	91, 1153, 1228, 1772
BsaXI	ACNNNNNCTCC	6 cut(s)	483, 513, 878, 908, 1724, 1754
Bse118I	RCCGGY	1 cut(s)	824
Bse1I	ACTGG	5 cut(s)	425, 498, 1555, 2018, 2055
Bse21I	CCTNAGG	1 cut(s)	1316
Bse3DI	GCAATG	1 cut(s)	1198
BseAI	TCCGGA	1 cut(s)	91
BseGI	GGATG	5 cut(s)	800, 1119, 1162, 2057, 2143
BseMI	GCAATG	1 cut(s)	1198
BseMII	CTCAG	3 cut(s)	402, 535, 1890
BseNI	ACTGG	5 cut(s)	425, 498, 1555, 2018, 2055
BseSI	GKGCMC	2 cut(s)	60, 1601
BseXI	GCAGC	3 cut(s)	265, 695, 1705
BseYI	CCCAGC	3 cut(s)	237, 631, 2157
BsgI	GTGCAG	2 cut(s)	122, 477
Bsh1236I	CGCG	1 cut(s)	1052
BshNI	GGYRCC	4 cut(s)	313, 468, 1550, 1868
BsiHKAI	GWGCWC	2 cut(s)	273, 389
BsiHKCI	CYCGRG	3 cut(s)	53, 1907, 2043
BslFI	GGGAC	9 cut(s)	109, 1068, 1407, 1508, 1827, 1975, 2024, 2061, 2132
BsmAI	GTCTC	2 cut(s)	590, 1772
BsmFI	GGGAC	9 cut(s)	109, 1068, 1407, 1508, 1827, 1975, 2024, 2061, 2132
Bso31I	GGTCTC	1 cut(s)	1772
BsoBI	CYCGRG	3 cut(s)	53, 1907, 2043
Bsp1286I	GDGCHC	6 cut(s)	60, 273, 389, 885, 1601, 2043
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	8 cut(s)	757, 850, 1295, 1605, 1802, 1848, 2053, 2079
Bsp1720I	GCTNAGC	1 cut(s)	993
Bsp19I	CCATGG	1 cut(s)	2147
BspCNI	CTCAG	3 cut(s)	401, 534, 1889
BspEI	TCCGGA	1 cut(s)	91
BspFNI	CGCG	1 cut(s)	1052
BspHI	TCATGA	2 cut(s)	393, 2019
BspMAI	CTGCAG	1 cut(s)	1514
BspMI	ACCTGC	3 cut(s)	568, 597, 1503
BspPI	GGATC	6 cut(s)	752, 1600, 1810, 1856, 2048, 2061
BspT107I	GGYRCC	4 cut(s)	313, 468, 1550, 1868
BspTNI	GGTCTC	1 cut(s)	1772
BsrDI	GCAATG	1 cut(s)	1198
BsrFI	RCCGGY	1 cut(s)	824
BsrI	ACTGG	5 cut(s)	425, 498, 1555, 2018, 2055
BssAI	RCCGGY	1 cut(s)	824
BssMI	GATC	8 cut(s)	757, 850, 1295, 1605, 1802, 1848, 2053, 2079
BssNI	GRCGYC	1 cut(s)	984
BssSI	CACGAG	1 cut(s)	272
BssT1I	CCWWGG	5 cut(s)	286, 906, 1704, 1980, 2147
Bst2BI	CACGAG	1 cut(s)	272
Bst4CI	ACNGT	6 cut(s)	553, 1075, 1398, 1643, 1989, 1999
Bst6I	CTCTTC	3 cut(s)	1186, 1912, 2082
BstACI	GRCGYC	1 cut(s)	984
BstAPI	GCANNNNNTGC	1 cut(s)	583
BstBAI	YACGTR	1 cut(s)	355
BstC8I	GCNNGC	3 cut(s)	105, 826, 999
BstDEI	CTNAG	8 cut(s)	388, 521, 993, 1068, 1187, 1316, 1602, 1876
BstDSI	CCRYGG	2 cut(s)	1470, 2147
BstEII	GGTNACC	1 cut(s)	1277
BstF5I	GGATG	5 cut(s)	800, 1119, 1162, 2057, 2143
BstFNI	CGCG	1 cut(s)	1052
BstH2I	RGCGCY	1 cut(s)	2164
BstHHI	GCGC	1 cut(s)	2163
BstKTI	GATC	8 cut(s)	760, 853, 1298, 1608, 1805, 1851, 2056, 2082
BstMAI	GTCTC	2 cut(s)	590, 1772
BstMBI	GATC	8 cut(s)	757, 850, 1295, 1605, 1802, 1848, 2053, 2079
BstMWI	GCNNNNNNNGC	5 cut(s)	263, 583, 825, 998, 1622
BstNSI	RCATGY	2 cut(s)	892, 1936
BstPI	GGTNACC	1 cut(s)	1277
BstSFI	CTRYAG	2 cut(s)	1181, 1510
BstSLI	GKGCMC	2 cut(s)	60, 1601
BstSNI	TACGTA	1 cut(s)	355
BstUI	CGCG	1 cut(s)	1052
BstV1I	GCAGC	3 cut(s)	265, 695, 1705
BstV2I	GAAGAC	1 cut(s)	1183
BstX2I	RGATCY	3 cut(s)	757, 1605, 2053
BstXI	CCANNNNNNTGG	3 cut(s)	631, 777, 1390
BstYI	RGATCY	3 cut(s)	757, 1605, 2053
Bsu36I	CCTNAGG	1 cut(s)	1316
BsuI	GTATCC	2 cut(s)	1319, 1522
BtgI	CCRYGG	2 cut(s)	1470, 2147
BtrI	CACGTC	1 cut(s)	244
BtsCI	GGATG	5 cut(s)	800, 1119, 1162, 2057, 2143
BtsI	GCAGTG	2 cut(s)	1395, 1425
BtsIMutI	CAGTG	4 cut(s)	432, 491, 1395, 1425
BveI	ACCTGC	3 cut(s)	568, 597, 1503
Cac8I	GCNNGC	3 cut(s)	105, 826, 999
CaiI	CAGNNNCTG	2 cut(s)	1594, 2164
CciI	TCATGA	2 cut(s)	393, 2019
CfoI	GCGC	1 cut(s)	2163
Cfr10I	RCCGGY	1 cut(s)	824
Cfr9I	CCCGGG	1 cut(s)	2043
CseI	GACGC	1 cut(s)	992
DdeI	CTNAG	8 cut(s)	388, 521, 993, 1068, 1187, 1316, 1602, 1876
DpnI	GATC	8 cut(s)	759, 852, 1297, 1607, 1804, 1850, 2055, 2081
DpnII	GATC	8 cut(s)	757, 850, 1295, 1605, 1802, 1848, 2053, 2079
DrdI	GACNNNNNNGTC	1 cut(s)	854
DriI	GACNNNNNGTC	2 cut(s)	121, 1641
DseDI	GACNNNNNNGTC	1 cut(s)	854
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	3 cut(s)	1186, 1912, 2082
Eam1105I	GACNNNNNGTC	2 cut(s)	121, 1641
EarI	CTCTTC	3 cut(s)	1186, 1912, 2082
EciI	GGCGGA	1 cut(s)	756
Ecl136II	GAGCTC	1 cut(s)	387
Eco105I	TACGTA	1 cut(s)	355
Eco130I	CCWWGG	5 cut(s)	286, 906, 1704, 1980, 2147
Eco147I	AGGCCT	2 cut(s)	905, 1884
Eco24I	GRGCYC	3 cut(s)	389, 885, 2043
Eco31I	GGTCTC	1 cut(s)	1772
Eco32I	GATATC	1 cut(s)	646
Eco47I	GGWCC	4 cut(s)	145, 1055, 1117, 1752
Eco53kI	GAGCTC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	1235
Eco81I	CCTNAGG	1 cut(s)	1316
Eco88I	CYCGRG	3 cut(s)	53, 1907, 2043
Eco91I	GGTNACC	1 cut(s)	1277
EcoICRI	GAGCTC	1 cut(s)	387
EcoO109I	RGGNCCY	3 cut(s)	1055, 2069, 2096
EcoO65I	GGTNACC	1 cut(s)	1277
EcoRV	GATATC	1 cut(s)	646
EcoT14I	CCWWGG	5 cut(s)	286, 906, 1704, 1980, 2147
EcoT22I	ATGCAT	1 cut(s)	1938
EcoT38I	GRGCYC	3 cut(s)	389, 885, 2043
ErhI	CCWWGG	5 cut(s)	286, 906, 1704, 1980, 2147
FalI	AAGNNNNNCTT	4 cut(s)	11, 43, 287, 319
FaqI	GGGAC	9 cut(s)	109, 1068, 1407, 1508, 1827, 1975, 2024, 2061, 2132
FauI	CCCGC	3 cut(s)	1045, 1858, 2107
FblI	GTMKAC	2 cut(s)	1140, 2031
Fnu4HI	GCNGC	8 cut(s)	5, 171, 279, 366, 684, 687, 753, 1719
FokI	GGATG	5 cut(s)	787, 1126, 1169, 2044, 2130
FriOI	GRGCYC	3 cut(s)	389, 885, 2043
Fsp4HI	GCNGC	8 cut(s)	5, 171, 279, 366, 684, 687, 753, 1719
FspBI	CTAG	4 cut(s)	453, 749, 1059, 1148
GlaI	GCGC	1 cut(s)	2162
GluI	GCNGC	8 cut(s)	5, 171, 279, 366, 684, 687, 753, 1719
GsaI	CCCAGC	3 cut(s)	241, 635, 2161
GsuI	CTGGAG	1 cut(s)	175
HaeII	RGCGCY	1 cut(s)	2164
HgaI	GACGC	1 cut(s)	992
HhaI	GCGC	1 cut(s)	2163
Hin1I	GRCGYC	1 cut(s)	984
Hin6I	GCGC	1 cut(s)	2161
HinP1I	GCGC	1 cut(s)	2161
HincII	GTYRAC	3 cut(s)	375, 1141, 1660
HindII	GTYRAC	3 cut(s)	375, 1141, 1660
HindIII	AAGCTT	2 cut(s)	1486, 1691
HinfI	GANTC	8 cut(s)	183, 407, 461, 704, 734, 1096, 1290, 1521
HphI	GGTGA	6 cut(s)	541, 557, 729, 1105, 1459, 1619
Hpy188III	TCNNGA	7 cut(s)	92, 180, 247, 394, 1672, 1750, 2020
Hpy99I	CGWCG	3 cut(s)	248, 1145, 1463
HpyAV	CCTTC	6 cut(s)	91, 289, 397, 1229, 1246, 1874
HpyCH4III	ACNGT	6 cut(s)	553, 1075, 1398, 1643, 1989, 1999
HpyCH4IV	ACGT	3 cut(s)	243, 354, 789
HpyCH4V	TGCA	9 cut(s)	24, 103, 458, 586, 1304, 1418, 1512, 1791, 1936
HpyF10VI	GCNNNNNNNGC	5 cut(s)	263, 583, 825, 998, 1622
HpyF3I	CTNAG	8 cut(s)	388, 521, 993, 1068, 1187, 1316, 1602, 1876
HpySE526I	ACGT	3 cut(s)	243, 354, 789
Hsp92I	GRCGYC	1 cut(s)	984
HspAI	GCGC	1 cut(s)	2161
Kpn2I	TCCGGA	1 cut(s)	91
KpnI	GGTACC	4 cut(s)	317, 472, 1554, 1872
KroI	GCCGGC	1 cut(s)	824
KroNI	GCCGGC	1 cut(s)	826
Kzo9I	GATC	8 cut(s)	757, 850, 1295, 1605, 1802, 1848, 2053, 2079
LmnI	GCTCC	4 cut(s)	268, 797, 821, 880
Lsp1109I	GCAGC	3 cut(s)	265, 695, 1705
MaeI	CTAG	4 cut(s)	453, 749, 1059, 1148
MaeII	ACGT	3 cut(s)	243, 354, 789
MaeIII	GTNAC	8 cut(s)	446, 863, 1097, 1222, 1238, 1277, 1537, 1967
MalI	GATC	8 cut(s)	759, 852, 1297, 1607, 1804, 1850, 2055, 2081
MboI	GATC	8 cut(s)	757, 850, 1295, 1605, 1802, 1848, 2053, 2079
MboII	GAAGA	7 cut(s)	19, 211, 1188, 1203, 1510, 1929, 2099
MflI	RGATCY	3 cut(s)	757, 1605, 2053
MhlI	GDGCHC	6 cut(s)	60, 273, 389, 885, 1601, 2043
MluCI	AATT	5 cut(s)	78, 224, 612, 837, 1122
MlyI	GAGTC	4 cut(s)	401, 1105, 1299, 1530
MmeI	TCCRAC	2 cut(s)	828, 1267
Mph1103I	ATGCAT	1 cut(s)	1938
MroI	TCCGGA	1 cut(s)	91
MroNI	GCCGGC	1 cut(s)	824
MseI	TTAA	5 cut(s)	9, 230, 572, 611, 615
MslI	CAYNNNNRTG	4 cut(s)	19, 1266, 1388, 1893
MspA1I	CMGCKG	4 cut(s)	266, 686, 819, 861
MvnI	CGCG	1 cut(s)	1052
MwoI	GCNNNNNNNGC	5 cut(s)	263, 583, 825, 998, 1622
NaeI	GCCGGC	1 cut(s)	826
NcoI	CCATGG	1 cut(s)	2147
NdeII	GATC	8 cut(s)	757, 850, 1295, 1605, 1802, 1848, 2053, 2079
NgoMIV	GCCGGC	1 cut(s)	824
NmuCI	GTSAC	3 cut(s)	1097, 1238, 1537
NsiI	ATGCAT	1 cut(s)	1938
NspI	RCATGY	2 cut(s)	892, 1936
OliI	CACNNNNGTG	2 cut(s)	19, 1388
PacI	TTAATTAA	1 cut(s)	615
PaeR7I	CTCGAG	1 cut(s)	1907
PagI	TCATGA	2 cut(s)	393, 2019
PceI	AGGCCT	2 cut(s)	905, 1884
PciI	ACATGT	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	2 cut(s)	1647, 1857
PdiI	GCCGGC	1 cut(s)	826
PfeI	GAWTC	4 cut(s)	183, 461, 704, 734
PflFI	GACNNNGTC	2 cut(s)	1075, 2015
PflMI	CCANNNNNTGG	1 cut(s)	907
PfoI	TCCNGGA	4 cut(s)	1524, 1728, 1991, 2060
PkrI	GCNGC	8 cut(s)	6, 172, 280, 367, 685, 688, 754, 1720
PleI	GAGTC	4 cut(s)	401, 1104, 1298, 1529
PpsI	GAGTC	4 cut(s)	401, 1104, 1298, 1529
Ppu21I	YACGTR	1 cut(s)	355
PpuMI	RGGWCCY	1 cut(s)	1055
PscI	ACATGT	1 cut(s)	888
Psp124BI	GAGCTC	1 cut(s)	389
Psp5II	RGGWCCY	1 cut(s)	1055
PspEI	GGTNACC	1 cut(s)	1277
PspFI	CCCAGC	3 cut(s)	237, 631, 2157
PspPPI	RGGWCCY	1 cut(s)	1055
PspXI	VCTCGAGB	1 cut(s)	1907
PstI	CTGCAG	1 cut(s)	1514
PstNI	CAGNNNCTG	2 cut(s)	1594, 2164
PsuI	RGATCY	3 cut(s)	757, 1605, 2053
PsyI	GACNNNGTC	2 cut(s)	1075, 2015
RseI	CAYNNNNRTG	4 cut(s)	19, 1266, 1388, 1893
SacI	GAGCTC	1 cut(s)	389
SalI	GTCGAC	1 cut(s)	1139
SaqAI	TTAA	5 cut(s)	9, 230, 572, 611, 615
SatI	GCNGC	8 cut(s)	5, 171, 279, 366, 684, 687, 753, 1719
Sau3AI	GATC	8 cut(s)	757, 850, 1295, 1605, 1802, 1848, 2053, 2079
ScaI	AGTACT	1 cut(s)	1815
SchI	GAGTC	4 cut(s)	401, 1105, 1299, 1530
SduI	GDGCHC	6 cut(s)	60, 273, 389, 885, 1601, 2043
SfcI	CTRYAG	2 cut(s)	1181, 1510
Sfr274I	CTCGAG	1 cut(s)	1907
SinI	GGWCC	4 cut(s)	145, 1055, 1117, 1752
SlaI	CTCGAG	1 cut(s)	1907
SmaI	CCCGGG	1 cut(s)	2045
SmiMI	CAYNNNNRTG	4 cut(s)	19, 1266, 1388, 1893
SmlI	CTYRAG	2 cut(s)	1670, 1907
SmoI	CTYRAG	2 cut(s)	1670, 1907
SnaBI	TACGTA	1 cut(s)	355
SpeI	ACTAGT	1 cut(s)	452
Sse9I	AATT	5 cut(s)	78, 224, 612, 837, 1122
SseBI	AGGCCT	2 cut(s)	905, 1884
SspI	AATATT	1 cut(s)	1086
SspMI	CTAG	4 cut(s)	453, 749, 1059, 1148
SstI	GAGCTC	1 cut(s)	389
StuI	AGGCCT	2 cut(s)	905, 1884
StyI	CCWWGG	5 cut(s)	286, 906, 1704, 1980, 2147
TaaI	ACNGT	6 cut(s)	553, 1075, 1398, 1643, 1989, 1999
TaiI	ACGT	3 cut(s)	246, 357, 792
TasI	AATT	5 cut(s)	78, 224, 612, 837, 1122
TatI	WGTACW	3 cut(s)	209, 429, 1813
TauI	GCSGC	5 cut(s)	7, 173, 368, 689, 755
TfiI	GAWTC	4 cut(s)	183, 461, 704, 734
Tru1I	TTAA	5 cut(s)	9, 230, 572, 611, 615
Tru9I	TTAA	5 cut(s)	9, 230, 572, 611, 615
TscAI	CASTG	4 cut(s)	432, 498, 1395, 1425
TseFI	GTSAC	3 cut(s)	1097, 1238, 1537
TseI	GCWGC	3 cut(s)	278, 683, 1718
Tsp45I	GTSAC	3 cut(s)	1097, 1238, 1537
TspDTI	ATGAA	6 cut(s)	175, 1098, 1250, 1265, 2036, 2138
TspGWI	ACGGA	4 cut(s)	215, 1487, 1556, 1778
TspMI	CCCGGG	1 cut(s)	2043
TspRI	CASTG	4 cut(s)	432, 498, 1395, 1425
Tth111I	GACNNNGTC	2 cut(s)	1075, 2015
Van91I	CCANNNNNTGG	1 cut(s)	907
VpaK11BI	GGWCC	4 cut(s)	145, 1055, 1117, 1752
XceI	RCATGY	2 cut(s)	892, 1936
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1417
XhoI	CTCGAG	1 cut(s)	1907
XmaI	CCCGGG	1 cut(s)	2043
XmiI	GTMKAC	2 cut(s)	1140, 2031
XspI	CTAG	4 cut(s)	453, 749, 1059, 1148
ZrmI	AGTACT	1 cut(s)	1815
Zsp2I	ATGCAT	1 cut(s)	1938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.