Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

51482914 .. 51483802

Gene Structure 889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00321840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCATCTTCAATCGTTGCTATGACAAACTTCGGCGAAATAGGAAAGTACTATAGGATCATAAGCCGTTGTTTAGCTTCTCACGTGACATCACACGACCATTGGGTTCGACTACATGAGACCGGTTATTGGCGCCATCCACGGCGACGTGCCTTTGACGAGGAGAGATATCGTGCAATAGGGGAAGAGGTGGCCAAGCTCCAAAGCATTGGATTCATCCGCCAAGTCAATTACCCCGGTGGCTTTCCAACTTGGTCATGGTCAAAAAGCCCGGCGGAAAGTGGCGGATGTGTGTCGACTTTAAAGGCCTCAACAAGGCATGCCCTAAGGACGACTTCACACTACCTCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

117

Amino Acids

13.43

Weight (kDa)

9.85

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	132
AccI	GTMKAC	1 cut(s)	296
AciI	CCGC	3 cut(s)	220, 275, 285
AclWI	GGATC	1 cut(s)	65
AcoI	YGGCCR	1 cut(s)	192
AcvI	CACGTG	1 cut(s)	85
AcyI	GRCGYC	1 cut(s)	133
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	129, 315
AgeI	ACCGGT	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	12
AjiI	CACGTC	1 cut(s)	149
AluBI	AGCT	2 cut(s)	77, 199
AluI	AGCT	2 cut(s)	77, 199
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	2 cut(s)	192, 306
AsiGI	ACCGGT	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	135
AsuC2I	CCSGG	2 cut(s)	237, 272
AxyI	CCTNAGG	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	132
BbrPI	CACGTG	1 cut(s)	85
BccI	CCATC	1 cut(s)	144
BceAI	ACGGC	2 cut(s)	51, 158
BcnI	CCSGG	2 cut(s)	237, 272
BcoDI	GTCTC	1 cut(s)	113
BfmI	CTRYAG	1 cut(s)	52
BfoI	RGCGCY	1 cut(s)	136
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	237, 272
BmgBI	CACGTC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	134
BmrFI	CCNGG	2 cut(s)	237, 272
BpuMI	CCSGG	2 cut(s)	237, 272
BsaAI	YACGTR	1 cut(s)	85
BsaHI	GRCGYC	1 cut(s)	133
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	140, 235
BsaWI	WCCGGW	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 315
Bse118I	RCCGGY	1 cut(s)	122
Bse21I	CCTNAGG	1 cut(s)	326
BseDI	CCNNGG	2 cut(s)	140, 235
BseGI	GGATG	3 cut(s)	136, 216, 293
BseLI	CCNNNNNNNGG	2 cut(s)	129, 315
BseRI	GAGGAG	1 cut(s)	176
BshFI	GGCC	2 cut(s)	194, 308
BshNI	GGYRCC	1 cut(s)	132
BshTI	ACCGGT	1 cut(s)	122
BsiSI	CCGG	3 cut(s)	123, 237, 272
BslI	CCNNNNNNNGG	2 cut(s)	129, 315
BsmAI	GTCTC	1 cut(s)	113
BsnI	GGCC	2 cut(s)	194, 308
Bso31I	GGTCTC	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	3 cut(s)	220, 275, 285
BspANI	GGCC	2 cut(s)	194, 308
BspLI	GGNNCC	1 cut(s)	134
BspPI	GGATC	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	140, 235
BssMI	GATC	1 cut(s)	57
BssNI	GRCGYC	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	133
BstBAI	YACGTR	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	326
BstDSI	CCRYGG	1 cut(s)	140
BstENI	CCTNNNNNAGG	1 cut(s)	313
BstF5I	GGATG	3 cut(s)	136, 216, 293
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	1 cut(s)	60
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	57
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	235, 270
BstSFI	CTRYAG	1 cut(s)	52
BstXI	CCANNNNNNTGG	1 cut(s)	209
Bsu36I	CCTNAGG	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	194, 308
BtgI	CCRYGG	1 cut(s)	140
BtrI	CACGTC	1 cut(s)	149
BtsCI	GGATG	3 cut(s)	136, 216, 293
Cac8I	GCNNGC	1 cut(s)	321
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	49
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	3 cut(s)	116, 258, 320
CviJI	RGCY	7 cut(s)	66, 77, 194, 199, 243, 270, 308
CviKI_1	RGCY	7 cut(s)	66, 77, 194, 199, 243, 270, 308
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	326
DinI	GGCGCC	1 cut(s)	134
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
DraI	TTTAAA	1 cut(s)	303
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
EciI	GGCGGA	3 cut(s)	209, 290, 300
Eco147I	AGGCCT	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	113
Eco32I	GATATC	1 cut(s)	170
Eco72I	CACGTG	1 cut(s)	85
Eco81I	CCTNAGG	1 cut(s)	326
EcoNI	CCTNNNNNAGG	1 cut(s)	313
EcoRV	GATATC	1 cut(s)	170
EgeI	GGCGCC	1 cut(s)	134
EheI	GGCGCC	1 cut(s)	134
FaeI	CATG	3 cut(s)	119, 261, 323
FaiI	YATR	7 cut(s)	23, 54, 62, 117, 259, 321, 352
FalI	AAGNNNNNCTT	2 cut(s)	319, 351
FatI	CATG	3 cut(s)	115, 257, 319
FblI	GTMKAC	1 cut(s)	296
FokI	GGATG	3 cut(s)	123, 203, 300
GlaI	GCGC	1 cut(s)	134
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	2 cut(s)	194, 308
HapII	CCGG	3 cut(s)	123, 237, 272
HhaI	GCGC	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	133
Hin1II	CATG	3 cut(s)	119, 261, 323
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HinfI	GANTC	1 cut(s)	213
HpaII	CCGG	3 cut(s)	123, 237, 272
Hpy166II	GTNNAC	1 cut(s)	297
Hpy8I	GTNNAC	1 cut(s)	297
Hpy99I	CGWCG	1 cut(s)	150
HpyCH4IV	ACGT	2 cut(s)	84, 148
HpyCH4V	TGCA	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	326
HpySE526I	ACGT	2 cut(s)	84, 148
Hsp92I	GRCGYC	1 cut(s)	133
Hsp92II	CATG	3 cut(s)	119, 261, 323
HspAI	GCGC	1 cut(s)	133
KasI	GGCGCC	1 cut(s)	132
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	204
LpnPI	CCDG	3 cut(s)	136, 250, 285
MaeII	ACGT	2 cut(s)	84, 148
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	1 cut(s)	197
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	1 cut(s)	229
MluNI	TGGCCA	1 cut(s)	194
Mly113I	GGCGCC	1 cut(s)	133
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	3 cut(s)	154, 181, 319
Mox20I	TGGCCA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	3 cut(s)	123, 237, 272
MspR9I	CCNGG	2 cut(s)	237, 272
NarI	GGCGCC	1 cut(s)	133
NciI	CCSGG	2 cut(s)	237, 272
NdeII	GATC	1 cut(s)	57
NlaIII	CATG	3 cut(s)	119, 261, 323
NlaIV	GGNNCC	1 cut(s)	134
NmuCI	GTSAC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	213
PinAI	ACCGGT	1 cut(s)	122
PluTI	GGCGCC	1 cut(s)	136
PmaCI	CACGTG	1 cut(s)	85
PmlI	CACGTG	1 cut(s)	85
Ppu21I	YACGTR	1 cut(s)	85
PspCI	CACGTG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	134
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SalI	GTCGAC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	302
Sau3AI	GATC	1 cut(s)	57
ScaI	AGTACT	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	237, 272
SetI	ASST	6 cut(s)	79, 87, 151, 192, 201, 348
SfcI	CTRYAG	1 cut(s)	52
SfoI	GGCGCC	1 cut(s)	134
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	1 cut(s)	229
SseBI	AGGCCT	1 cut(s)	308
SsiI	CCGC	3 cut(s)	220, 275, 285
SspDI	GGCGCC	1 cut(s)	132
StuI	AGGCCT	1 cut(s)	308
StyD4I	CCNGG	2 cut(s)	235, 270
TaiI	ACGT	2 cut(s)	87, 151
TaqI	TCGA	2 cut(s)	109, 296
TasI	AATT	1 cut(s)	229
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	205
XagI	CCTNNNNNAGG	1 cut(s)	313
XceI	RCATGY	1 cut(s)	323
XcmI	CCANNNNNNNNNTGG	1 cut(s)	255
XmiI	GTMKAC	1 cut(s)	296
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.