Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000239.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

434421 .. 434846

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000239.1_g000074.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgttgatgatgaaagtgccgaccccggccggcactgctacgatccggggtgatcaggctgccgcgaggaaatgctattctctaactgtatctcgcggtaagggaaagtctgaaatgttgcatgtagctactaaccctctgctggacaggtacgaggatcccagagccgataccgactccgacgaagaacggtccggtgccgtagaagacattgaagaggtggtcctatcaaagcagttcccggacaggactgttaggattggtacaaggctgtcttcggttgtcagggaaggattgatctcgtttctccgctctaacacatctgcattcgcctggtcctatgaggacatgcccggtataccgccagagatagccacgcacaatcttagtattgttccttactcaacaccggtaagacaaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

141

Amino Acids

15.58

Weight (kDa)

6.12

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AccBSI	CCGCTC	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	358
AccII	CGCG	2 cut(s)	65, 96
AciI	CCGC	4 cut(s)	63, 96, 310, 362
AclWI	GGATC	3 cut(s)	37, 152, 165
AcoI	YGGCCR	1 cut(s)	27
AfaI	GTAC	2 cut(s)	152, 265
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgeI	ACCGGT	1 cut(s)	409
AgsI	TTSAA	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	332
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
AlwI	GGATC	3 cut(s)	37, 152, 165
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	59
AsiGI	ACCGGT	1 cut(s)	409
AspS9I	GGNCC	3 cut(s)	192, 223, 336
AsuC2I	CCSGG	4 cut(s)	26, 47, 242, 354
AsuHPI	GGTGA	1 cut(s)	62
AvaII	GGWCC	3 cut(s)	192, 223, 336
BamHI	GGATCC	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	2 cut(s)	213, 267
BbvI	GCAGC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	334
BclI	TGATCA	1 cut(s)	52
BcnI	CCSGG	4 cut(s)	26, 47, 242, 354
BisI	GCNGC	2 cut(s)	60, 63
BlsI	GCNGC	2 cut(s)	61, 64
Bme1390I	CCNGG	5 cut(s)	26, 47, 242, 334, 354
Bme18I	GGWCC	3 cut(s)	192, 223, 336
BmgT120I	GGNCC	3 cut(s)	192, 223, 336
BmiI	GGNNCC	2 cut(s)	159, 199
BmrFI	CCNGG	5 cut(s)	26, 47, 242, 334, 354
BpiI	GAAGAC	2 cut(s)	213, 267
BpuMI	CCSGG	4 cut(s)	26, 47, 242, 354
BsaJI	CCNNGG	2 cut(s)	24, 46
BsaWI	WCCGGW	2 cut(s)	194, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse118I	RCCGGY	2 cut(s)	29, 409
BseBI	CCWGG	1 cut(s)	334
BseDI	CCNNGG	2 cut(s)	24, 46
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	46
Bsh1236I	CGCG	2 cut(s)	65, 96
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	197
BshTI	ACCGGT	1 cut(s)	409
BsiEI	CGRYCG	1 cut(s)	30
BsiSI	CCGG	7 cut(s)	26, 30, 46, 195, 242, 354, 410
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	29
Bsp143I	GATC	4 cut(s)	42, 52, 157, 297
BspACI	CCGC	4 cut(s)	63, 96, 310, 362
BspANI	GGCC	1 cut(s)	29
BspFNI	CGCG	2 cut(s)	65, 96
BspLI	GGNNCC	2 cut(s)	159, 199
BspPI	GGATC	3 cut(s)	37, 152, 165
BspT107I	GGYRCC	1 cut(s)	197
BsrBI	CCGCTC	1 cut(s)	312
BsrFI	RCCGGY	2 cut(s)	29, 409
BssAI	RCCGGY	2 cut(s)	29, 409
BssECI	CCNNGG	2 cut(s)	24, 46
BssMI	GATC	4 cut(s)	42, 52, 157, 297
BssNAI	GTATAC	1 cut(s)	359
Bst1107I	GTATAC	1 cut(s)	359
Bst2UI	CCWGG	1 cut(s)	334
Bst4CI	ACNGT	3 cut(s)	88, 192, 253
Bst6I	CTCTTC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	386
BstFNI	CGCG	2 cut(s)	65, 96
BstKTI	GATC	4 cut(s)	45, 55, 160, 300
BstMBI	GATC	4 cut(s)	42, 52, 157, 297
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	334
BstNSI	RCATGY	2 cut(s)	125, 352
BstSCI	CCNGG	5 cut(s)	24, 45, 240, 332, 352
BstUI	CGCG	2 cut(s)	65, 96
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	2 cut(s)	213, 267
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BstZ17I	GTATAC	1 cut(s)	359
BstZI	CGGCCG	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	29
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	31
Cfr10I	RCCGGY	2 cut(s)	29, 409
Cfr13I	GGNCC	3 cut(s)	192, 223, 336
CpoI	CGGWCCG	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	151, 264
CspAI	ACCGGT	1 cut(s)	409
CspI	CGGWCCG	1 cut(s)	192
CviAII	CATG	2 cut(s)	122, 349
CviJI	RGCY	6 cut(s)	29, 59, 128, 167, 271, 374
CviKI_1	RGCY	6 cut(s)	29, 59, 128, 167, 271, 374
CviQI	GTAC	2 cut(s)	151, 264
DdeI	CTNAG	1 cut(s)	386
DpnI	GATC	4 cut(s)	44, 54, 159, 299
DpnII	GATC	4 cut(s)	42, 52, 157, 297
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
EclXI	CGGCCG	1 cut(s)	27
Eco47I	GGWCC	3 cut(s)	192, 223, 336
Eco52I	CGGCCG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	332
FaeI	CATG	2 cut(s)	125, 352
FaiI	YATR	4 cut(s)	123, 342, 350, 359
FalI	AAGNNNNNCTT	2 cut(s)	259, 291
FatI	CATG	2 cut(s)	121, 348
FbaI	TGATCA	1 cut(s)	52
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	60, 63
Fsp4HI	GCNGC	2 cut(s)	60, 63
GluI	GCNGC	2 cut(s)	60, 63
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	7 cut(s)	26, 30, 46, 195, 242, 354, 410
Hin1II	CATG	2 cut(s)	125, 352
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	7 cut(s)	26, 30, 46, 195, 242, 354, 410
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	2 cut(s)	112, 181
Hpy8I	GTNNAC	1 cut(s)	359
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	3 cut(s)	88, 192, 253
HpyCH4V	TGCA	2 cut(s)	121, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	386
Hsp92II	CATG	2 cut(s)	125, 352
KroI	GCCGGC	1 cut(s)	29
KroNI	GCCGGC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	4 cut(s)	42, 52, 157, 297
Lsp1109I	GCAGC	1 cut(s)	46
MalI	GATC	4 cut(s)	44, 54, 159, 299
MbiI	CCGCTC	1 cut(s)	312
MboI	GATC	4 cut(s)	42, 52, 157, 297
MboII	GAAGA	4 cut(s)	197, 218, 227, 267
MflI	RGATCY	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	5 cut(s)	60, 147, 148, 211, 337
MroNI	GCCGGC	1 cut(s)	29
MspI	CCGG	7 cut(s)	26, 30, 46, 195, 242, 354, 410
MspR9I	CCNGG	5 cut(s)	26, 47, 242, 334, 354
Mva1269I	GAATGC	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	334
MvnI	CGCG	2 cut(s)	65, 96
MwoI	GCNNNNNNNGC	1 cut(s)	35
NaeI	GCCGGC	1 cut(s)	31
NciI	CCSGG	4 cut(s)	26, 47, 242, 354
NdeII	GATC	4 cut(s)	42, 52, 157, 297
NgoMIV	GCCGGC	1 cut(s)	29
NlaIII	CATG	2 cut(s)	125, 352
NlaIV	GGNNCC	2 cut(s)	159, 199
NspI	RCATGY	2 cut(s)	125, 352
PctI	GAATGC	1 cut(s)	326
PdiI	GCCGGC	1 cut(s)	31
PfoI	TCCNGGA	1 cut(s)	240
PinAI	ACCGGT	1 cut(s)	409
PkrI	GCNGC	2 cut(s)	61, 64
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	332
PspN4I	GGNNCC	2 cut(s)	159, 199
PspPI	GGNCC	3 cut(s)	192, 223, 336
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	2 cut(s)	152, 265
RsaNI	GTAC	2 cut(s)	151, 264
Rsr2I	CGGWCCG	1 cut(s)	192
RsrII	CGGWCCG	1 cut(s)	192
SatI	GCNGC	2 cut(s)	60, 63
Sau3AI	GATC	4 cut(s)	42, 52, 157, 297
Sau96I	GGNCC	3 cut(s)	192, 223, 336
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	5 cut(s)	26, 47, 242, 334, 354
SetI	ASST	3 cut(s)	130, 152, 222
SinI	GGWCC	3 cut(s)	192, 223, 336
SsiI	CCGC	4 cut(s)	63, 96, 310, 362
StyD4I	CCNGG	5 cut(s)	24, 45, 240, 332, 352
TaaI	ACNGT	3 cut(s)	88, 192, 253
TauI	GCSGC	1 cut(s)	65
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	26
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	3 cut(s)	192, 223, 336
XceI	RCATGY	2 cut(s)	125, 352
XmiI	GTMKAC	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.