Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010685.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 793

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010685.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

gcagagacaactctcccacagtctgattggaacctgcacgtggacggctccgcctgtgctaaggccagcggcgccggagtcgtcttaatcggacccgggggactgaacgcagagtacgcgctgaaattcaacttcaaagcttcaaacaatatggcggaggaaaagaacgccaaggctgattcactagcaagactggcaactgcccaaccgcatcagagtccagcggacacaagggtgaagtatcttgacaagccaagtatcacaaaaaccttggcggaaattttcaacgttcaagtcaaccccagctggatggacgagatcattacatataaacgcaacggaacattaccagaagataaagtccaggcaagacagctccagcgaagagcaacccgctacaacatccagcacggcaagctttaccgccagggattcacccatcctaacctccgctgtctaaccccagaggaaggaagggttgtcttagcggaaatccatggcggggaatgcggcaaccactcgggcgtcatcacccagtgtaggccagaagtacccttaaggctacttctggcccacacttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

194

Amino Acids

21.44

Weight (kDa)

8.92

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	42
AccB1I	GGYRCC	1 cut(s)	71
AccII	CGCG	1 cut(s)	119
AclI	AACGTT	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	125, 279
AcvI	CACGTG	1 cut(s)	40
AcyI	GRCGYC	2 cut(s)	72, 525
AdeI	CACNNNGTG	2 cut(s)	537, 582
AfaI	GTAC	2 cut(s)	116, 552
AfiI	CCNNNNNNNGG	5 cut(s)	40, 470, 502, 540, 579
AflII	CTTAAG	1 cut(s)	556
AgsI	TTSAA	5 cut(s)	130, 136, 144, 286, 293
AjnI	CCWGG	2 cut(s)	363, 426
AleI	CACNNNNGTG	1 cut(s)	233
AluBI	AGCT	4 cut(s)	140, 306, 376, 418
AluI	AGCT	4 cut(s)	140, 306, 376, 418
Ama87I	CYCGRG	2 cut(s)	95, 520
AoxI	GGCC	3 cut(s)	63, 542, 570
ApoI	RAATTY	2 cut(s)	125, 279
AspLEI	GCGC	2 cut(s)	74, 121
AspS9I	GGNCC	2 cut(s)	92, 571
AsuC2I	CCSGG	2 cut(s)	96, 97
AsuHPI	GGTGA	3 cut(s)	247, 427, 523
AvaI	CYCGRG	2 cut(s)	95, 520
AvaII	GGWCC	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	71
BbrPI	CACGTG	1 cut(s)	40
BccI	CCATC	2 cut(s)	304, 447
BceAI	ACGGC	2 cut(s)	61, 427
BciT130I	CCWGG	2 cut(s)	365, 428
BcnI	CCSGG	2 cut(s)	96, 97
BfaI	CTAG	1 cut(s)	185
BfoI	RGCGCY	1 cut(s)	75
BfrI	CTTAAG	1 cut(s)	556
BfuAI	ACCTGC	1 cut(s)	42
BisI	GCNGC	2 cut(s)	70, 511
BlsI	GCNGC	2 cut(s)	71, 512
Bme1390I	CCNGG	4 cut(s)	96, 97, 365, 428
Bme18I	GGWCC	1 cut(s)	92
BmeT110I	CYCGRG	2 cut(s)	95, 520
BmgT120I	GGNCC	2 cut(s)	92, 571
BmiI	GGNNCC	4 cut(s)	32, 49, 73, 94
BmrFI	CCNGG	4 cut(s)	96, 97, 365, 428
BmrI	ACTGGG	1 cut(s)	529
BmsI	GCATC	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	529
BpmI	CTGGAG	1 cut(s)	362
Bpu10I	CCTNAGC	1 cut(s)	60
BpuMI	CCSGG	2 cut(s)	96, 97
BsaAI	YACGTR	1 cut(s)	40
BsaHI	GRCGYC	2 cut(s)	72, 525
BsaJI	CCNNGG	6 cut(s)	95, 96, 171, 270, 427, 496
Bsc4I	CCNNNNNNNGG	5 cut(s)	40, 470, 502, 540, 579
Bse1I	ACTGG	2 cut(s)	198, 535
BseBI	CCWGG	2 cut(s)	365, 428
BseDI	CCNNGG	6 cut(s)	95, 96, 171, 270, 427, 496
BseGI	GGATG	3 cut(s)	315, 402, 439
BseLI	CCNNNNNNNGG	5 cut(s)	40, 470, 502, 540, 579
BseNI	ACTGG	2 cut(s)	198, 535
BseYI	CCCAGC	1 cut(s)	302
BsgI	GTGCAG	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	3 cut(s)	65, 544, 572
BshNI	GGYRCC	1 cut(s)	71
BsiHKCI	CYCGRG	2 cut(s)	95, 520
BsiSI	CCGG	2 cut(s)	75, 96
BslFI	GGGAC	1 cut(s)	114
BslI	CCNNNNNNNGG	5 cut(s)	40, 470, 502, 540, 579
BsmFI	GGGAC	1 cut(s)	114
BsmI	GAATGC	1 cut(s)	512
BsnI	GGCC	3 cut(s)	65, 544, 572
BsoBI	CYCGRG	2 cut(s)	95, 520
Bsp143I	GATC	1 cut(s)	318
Bsp19I	CCATGG	1 cut(s)	496
BspANI	GGCC	3 cut(s)	65, 544, 572
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	4 cut(s)	32, 49, 73, 94
BspMI	ACCTGC	1 cut(s)	42
BspQI	GCTCTTC	1 cut(s)	379
BspT107I	GGYRCC	1 cut(s)	71
BspTI	CTTAAG	1 cut(s)	556
BsrI	ACTGG	2 cut(s)	198, 535
BssECI	CCNNGG	6 cut(s)	95, 96, 171, 270, 427, 496
BssMI	GATC	1 cut(s)	318
BssNI	GRCGYC	2 cut(s)	72, 525
BssT1I	CCWWGG	3 cut(s)	171, 270, 496
Bst2UI	CCWGG	2 cut(s)	365, 428
Bst4CI	ACNGT	1 cut(s)	21
Bst6I	CTCTTC	1 cut(s)	379
BstACI	GRCGYC	2 cut(s)	72, 525
BstAFI	CTTAAG	1 cut(s)	556
BstBAI	YACGTR	1 cut(s)	40
BstC8I	GCNNGC	2 cut(s)	67, 416
BstDEI	CTNAG	2 cut(s)	60, 484
BstDSI	CCRYGG	1 cut(s)	496
BstF5I	GGATG	3 cut(s)	315, 402, 439
BstFNI	CGCG	1 cut(s)	119
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 121
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 116, 194, 415, 507
BstNI	CCWGG	2 cut(s)	365, 428
BstSCI	CCNGG	4 cut(s)	94, 95, 363, 426
BstUI	CGCG	1 cut(s)	119
BstXI	CCANNNNNNTGG	1 cut(s)	310
BsuRI	GGCC	3 cut(s)	65, 544, 572
BtgI	CCRYGG	1 cut(s)	496
BtsCI	GGATG	3 cut(s)	315, 402, 439
BtsIMutI	CAGTG	1 cut(s)	542
BveI	ACCTGC	1 cut(s)	42
Cac8I	GCNNGC	2 cut(s)	67, 416
CfoI	GCGC	2 cut(s)	74, 121
Cfr13I	GGNCC	2 cut(s)	92, 571
Cfr9I	CCCGGG	1 cut(s)	95
CseI	GACGC	1 cut(s)	514
Csp6I	GTAC	2 cut(s)	115, 551
CviAII	CATG	1 cut(s)	497
CviQI	GTAC	2 cut(s)	115, 551
DdeI	CTNAG	2 cut(s)	60, 484
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
DraIII	CACNNNGTG	2 cut(s)	537, 582
Eam1104I	CTCTTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	379
EciI	GGCGGA	3 cut(s)	40, 170, 290
Eco130I	CCWWGG	3 cut(s)	171, 270, 496
Eco47I	GGWCC	1 cut(s)	92
Eco72I	CACGTG	1 cut(s)	40
Eco88I	CYCGRG	2 cut(s)	95, 520
EcoRII	CCWGG	2 cut(s)	363, 426
EcoT14I	CCWWGG	3 cut(s)	171, 270, 496
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
ErhI	CCWWGG	3 cut(s)	171, 270, 496
FaeI	CATG	1 cut(s)	500
FaiI	YATR	4 cut(s)	152, 328, 330, 498
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	1 cut(s)	496
FauI	CCCGC	2 cut(s)	401, 494
Fnu4HI	GCNGC	2 cut(s)	70, 511
FokI	GGATG	3 cut(s)	322, 389, 426
Fsp4HI	GCNGC	2 cut(s)	70, 511
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	2 cut(s)	73, 120
GluI	GCNGC	2 cut(s)	70, 511
GsaI	CCCAGC	1 cut(s)	306
GsuI	CTGGAG	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	65, 544, 572
HapII	CCGG	2 cut(s)	75, 96
HgaI	GACGC	1 cut(s)	514
HhaI	GCGC	2 cut(s)	74, 121
Hin1I	GRCGYC	2 cut(s)	72, 525
Hin1II	CATG	1 cut(s)	500
Hin6I	GCGC	2 cut(s)	72, 119
HinP1I	GCGC	2 cut(s)	72, 119
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	2 cut(s)	138, 416
HinfI	GANTC	4 cut(s)	78, 179, 217, 432
HpaII	CCGG	2 cut(s)	75, 96
HphI	GGTGA	3 cut(s)	247, 427, 523
Hpy166II	GTNNAC	2 cut(s)	43, 298
Hpy188I	TCNGA	3 cut(s)	25, 92, 216
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	2 cut(s)	43, 298
HpyAV	CCTTC	2 cut(s)	464, 468
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4IV	ACGT	2 cut(s)	39, 288
HpyCH4V	TGCA	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 116, 194, 415, 507
HpyF3I	CTNAG	2 cut(s)	60, 484
HpySE526I	ACGT	2 cut(s)	39, 288
Hsp92I	GRCGYC	2 cut(s)	72, 525
Hsp92II	CATG	1 cut(s)	500
HspAI	GCGC	2 cut(s)	72, 119
KasI	GGCGCC	1 cut(s)	71
Kzo9I	GATC	1 cut(s)	318
LguI	GCTCTTC	1 cut(s)	379
LmnI	GCTCC	2 cut(s)	53, 381
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	2 cut(s)	39, 288
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	2 cut(s)	365, 396
MluCI	AATT	2 cut(s)	125, 279
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	2 cut(s)	87, 226
MnlI	CCTC	3 cut(s)	151, 458, 460
MseI	TTAA	2 cut(s)	86, 557
MslI	CAYNNNNRTG	1 cut(s)	233
MspA1I	CMGCKG	4 cut(s)	69, 224, 306, 453
MspCI	CTTAAG	1 cut(s)	556
MspI	CCGG	2 cut(s)	75, 96
MspR9I	CCNGG	4 cut(s)	96, 97, 365, 428
Mva1269I	GAATGC	1 cut(s)	512
MvaI	CCWGG	2 cut(s)	365, 428
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	5 cut(s)	71, 116, 194, 415, 507
NarI	GGCGCC	1 cut(s)	72
NciI	CCSGG	2 cut(s)	96, 97
NcoI	CCATGG	1 cut(s)	496
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	1 cut(s)	500
NlaIV	GGNNCC	4 cut(s)	32, 49, 73, 94
OliI	CACNNNNGTG	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	379
PctI	GAATGC	1 cut(s)	512
PfeI	GAWTC	2 cut(s)	179, 432
PkrI	GCNGC	2 cut(s)	71, 512
PleI	GAGTC	2 cut(s)	86, 225
PluTI	GGCGCC	1 cut(s)	75
PmaCI	CACGTG	1 cut(s)	40
PmlI	CACGTG	1 cut(s)	40
PpsI	GAGTC	2 cut(s)	86, 225
Ppu21I	YACGTR	1 cut(s)	40
Psp1406I	AACGTT	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	363, 426
PspCI	CACGTG	1 cut(s)	40
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	2 cut(s)	363, 426
PspN4I	GGNNCC	4 cut(s)	32, 49, 73, 94
PspPI	GGNCC	2 cut(s)	92, 571
PsrI	GAACNNNNNNTAC	2 cut(s)	98, 130
PvuII	CAGCTG	1 cut(s)	306
RsaI	GTAC	2 cut(s)	116, 552
RsaNI	GTAC	2 cut(s)	115, 551
RseI	CAYNNNNRTG	1 cut(s)	233
SapI	GCTCTTC	1 cut(s)	379
SaqAI	TTAA	2 cut(s)	86, 557
SatI	GCNGC	2 cut(s)	70, 511
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	2 cut(s)	92, 571
SchI	GAGTC	2 cut(s)	87, 226
ScrFI	CCNGG	4 cut(s)	96, 97, 365, 428
SetI	ASST	9 cut(s)	36, 42, 142, 272, 291, 308, 378, 420, 450
SfaNI	GCATC	1 cut(s)	220
SfoI	GGCGCC	1 cut(s)	73
SinI	GGWCC	1 cut(s)	92
SmaI	CCCGGG	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
Sse9I	AATT	2 cut(s)	125, 279
SspDI	GGCGCC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	4 cut(s)	94, 95, 363, 426
StyI	CCWWGG	3 cut(s)	171, 270, 496
TaaI	ACNGT	1 cut(s)	21
TaiI	ACGT	2 cut(s)	42, 291
TasI	AATT	2 cut(s)	125, 279
TauI	GCSGC	2 cut(s)	72, 513
TfiI	GAWTC	2 cut(s)	179, 432
Tru1I	TTAA	2 cut(s)	86, 557
Tru9I	TTAA	2 cut(s)	86, 557
TscAI	CASTG	1 cut(s)	542
TspGWI	ACGGA	1 cut(s)	354
TspMI	CCCGGG	1 cut(s)	95
TspRI	CASTG	1 cut(s)	542
Vha464I	CTTAAG	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	2 cut(s)	125, 279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	24
XmaI	CCCGGG	1 cut(s)	95
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.