Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8464165.1

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

163 .. 797

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8464165.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgtcatcttaccaggctctcgccaaggcattagtgcaacgattcaccatctttacaattactcagatactgagggcaaagaacaacaaggctgataccttagccaagctcacagcagccccgccaagtagtgcctatggtgccacgaaggtgaaaattaacattagacaagccaatcacctcgaaagtggtatgcgagatatttgccatcgacactacaccctcatggatcgacacaatattaaagtacatggtcgatggccttactccggaggacaaggtcgaggctacgaggttacaactcagataagcccggtacacgataatgaatggcaagttatacaagaggggtcacagcttcccctatttgaagtgtgtcacggaggacgagggctctccgtgctgggtatttatggccaacaatgtcagcactggcagaaacattctccagttcctgccataagtgctagatgtacgccaatatccctagggcaccttcgattgccctttccattctacttgcaccatgacccttttgccagtagggactggacctcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

186

Amino Acids

20.97

Weight (kDa)

9.66

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	140, 492
AccIII	TCCGGA	1 cut(s)	269
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	237
AcoI	YGGCCR	1 cut(s)	415
AfaI	GTAC	3 cut(s)	249, 318, 475
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	12
AleI	CACNNNNGTG	1 cut(s)	149
AluBI	AGCT	2 cut(s)	109, 358
AluI	AGCT	2 cut(s)	109, 358
AlwI	GGATC	1 cut(s)	237
AlwNI	CAGNNNCTG	2 cut(s)	70, 455
Aor13HI	TCCGGA	1 cut(s)	269
AoxI	GGCC	2 cut(s)	260, 415
ApeKI	GCWGC	1 cut(s)	116
AspA2I	CCTAGG	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	552
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	3 cut(s)	37, 163, 170
AvaII	GGWCC	1 cut(s)	552
AvrII	CCTAGG	1 cut(s)	487
BaeGI	GKGCMC	1 cut(s)	495
BalI	TGGCCA	1 cut(s)	417
BanI	GGYRCC	2 cut(s)	140, 492
BanII	GRGCYC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	3 cut(s)	56, 216, 252
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BciT130I	CCWGG	1 cut(s)	14
BcnI	CCSGG	1 cut(s)	314
BfaI	CTAG	2 cut(s)	468, 488
BisI	GCNGC	1 cut(s)	117
BlnI	CCTAGG	1 cut(s)	487
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	14, 314
Bme18I	GGWCC	1 cut(s)	552
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	2 cut(s)	142, 494
BmrFI	CCNGG	2 cut(s)	14, 314
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	100
BpuMI	CCSGG	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	24, 487
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	4 cut(s)	437, 449, 540, 554
BseAI	TCCGGA	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	24, 487
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMII	CTCAG	3 cut(s)	62, 77, 317
BseNI	ACTGG	4 cut(s)	437, 449, 540, 554
BseSI	GKGCMC	1 cut(s)	495
BseXI	GCAGC	1 cut(s)	128
BseYI	CCCAGC	1 cut(s)	403
BshFI	GGCC	2 cut(s)	262, 417
BshNI	GGYRCC	2 cut(s)	140, 492
BsiSI	CCGG	2 cut(s)	270, 314
BslI	CCNNNNNNNGG	1 cut(s)	269
BsnI	GGCC	2 cut(s)	262, 417
Bsp1286I	GDGCHC	2 cut(s)	396, 495
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	2 cut(s)	262, 417
BspCNI	CTCAG	3 cut(s)	63, 76, 316
BspEI	TCCGGA	1 cut(s)	269
BspLI	GGNNCC	2 cut(s)	142, 494
BspPI	GGATC	1 cut(s)	237
BspT107I	GGYRCC	2 cut(s)	140, 492
BsrI	ACTGG	4 cut(s)	437, 449, 540, 554
BssECI	CCNNGG	2 cut(s)	24, 487
BssMI	GATC	1 cut(s)	229
BssT1I	CCWWGG	2 cut(s)	24, 487
Bst2UI	CCWGG	1 cut(s)	14
BstDEI	CTNAG	4 cut(s)	63, 71, 100, 303
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 400, 464
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	12, 312
BstSLI	GKGCMC	1 cut(s)	495
BstV1I	GCAGC	1 cut(s)	128
BsuRI	GGCC	2 cut(s)	262, 417
BtsIMutI	CAGTG	1 cut(s)	430
CaiI	CAGNNNCTG	2 cut(s)	70, 455
Cfr13I	GGNCC	1 cut(s)	552
Csp6I	GTAC	3 cut(s)	248, 317, 474
CviAII	CATG	3 cut(s)	226, 251, 527
CviQI	GTAC	3 cut(s)	248, 317, 474
DdeI	CTNAG	4 cut(s)	63, 71, 100, 303
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	415
Eco130I	CCWWGG	2 cut(s)	24, 487
Eco24I	GRGCYC	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	552
EcoRII	CCWGG	1 cut(s)	12
EcoT14I	CCWWGG	2 cut(s)	24, 487
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	2 cut(s)	24, 487
FaeI	CATG	3 cut(s)	229, 254, 530
FaiI	YATR	9 cut(s)	138, 194, 227, 252, 341, 414, 461, 528, 559
FatI	CATG	3 cut(s)	225, 250, 526
FauI	CCCGC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	117
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	2 cut(s)	468, 488
GluI	GCNGC	1 cut(s)	117
GsaI	CCCAGC	1 cut(s)	407
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	262, 417
HapII	CCGG	2 cut(s)	270, 314
Hin1II	CATG	3 cut(s)	229, 254, 530
HinfI	GANTC	1 cut(s)	42
HpaII	CCGG	2 cut(s)	270, 314
HphI	GGTGA	3 cut(s)	37, 163, 170
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	2 cut(s)	66, 306
Hpy188III	TCNNGA	1 cut(s)	270
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	2 cut(s)	142, 506
HpyCH4V	TGCA	2 cut(s)	37, 523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 400, 464
HpyF3I	CTNAG	4 cut(s)	63, 71, 100, 303
Hsp92II	CATG	3 cut(s)	229, 254, 530
Kpn2I	TCCGGA	1 cut(s)	269
Kzo9I	GATC	1 cut(s)	229
LpnPI	CCDG	9 cut(s)	26, 283, 327, 389, 418, 462, 468, 535, 553
Lsp1109I	GCAGC	1 cut(s)	128
MaeI	CTAG	2 cut(s)	468, 488
MaeIII	GTNAC	3 cut(s)	295, 351, 377
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MhlI	GDGCHC	2 cut(s)	396, 495
MlsI	TGGCCA	1 cut(s)	417
MluCI	AATT	2 cut(s)	57, 156
MluNI	TGGCCA	1 cut(s)	417
MnlI	CCTC	9 cut(s)	66, 191, 233, 266, 278, 286, 340, 377, 383
Mox20I	TGGCCA	1 cut(s)	417
MroI	TCCGGA	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	417
MseI	TTAA	2 cut(s)	159, 243
MslI	CAYNNNNRTG	3 cut(s)	149, 224, 324
Msp20I	TGGCCA	1 cut(s)	417
MspI	CCGG	2 cut(s)	270, 314
MspR9I	CCNGG	2 cut(s)	14, 314
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	3 cut(s)	140, 400, 464
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	3 cut(s)	229, 254, 530
NlaIV	GGNNCC	2 cut(s)	142, 494
NmuCI	GTSAC	2 cut(s)	351, 377
OliI	CACNNNNGTG	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	42
PflFI	GACNNNGTC	1 cut(s)	279
PkrI	GCNGC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	12
PspFI	CCCAGC	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	12
PspN4I	GGNNCC	2 cut(s)	142, 494
PspPI	GGNCC	1 cut(s)	552
PstNI	CAGNNNCTG	2 cut(s)	70, 455
PsyI	GACNNNGTC	1 cut(s)	279
RsaI	GTAC	3 cut(s)	249, 318, 475
RsaNI	GTAC	3 cut(s)	248, 317, 474
RseI	CAYNNNNRTG	3 cut(s)	149, 224, 324
SaqAI	TTAA	2 cut(s)	159, 243
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	552
ScrFI	CCNGG	2 cut(s)	14, 314
SduI	GDGCHC	2 cut(s)	396, 495
SetI	ASST	9 cut(s)	101, 111, 153, 183, 283, 297, 360, 498, 557
SinI	GGWCC	1 cut(s)	552
SmiMI	CAYNNNNRTG	3 cut(s)	149, 224, 324
Sse9I	AATT	2 cut(s)	57, 156
SsiI	CCGC	1 cut(s)	122
SspI	AATATT	1 cut(s)	241
SspMI	CTAG	2 cut(s)	468, 488
StyD4I	CCNGG	2 cut(s)	12, 312
StyI	CCWWGG	2 cut(s)	24, 487
TaqI	TCGA	6 cut(s)	183, 211, 232, 256, 283, 499
TasI	AATT	2 cut(s)	57, 156
TatI	WGTACW	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	2 cut(s)	159, 243
Tru9I	TTAA	2 cut(s)	159, 243
TscAI	CASTG	1 cut(s)	437
TseFI	GTSAC	2 cut(s)	351, 377
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	2 cut(s)	351, 377
TspDTI	ATGAA	1 cut(s)	342
TspGWI	ACGGA	2 cut(s)	388, 396
TspRI	CASTG	1 cut(s)	437
Tth111I	GACNNNGTC	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	552
XmaJI	CCTAGG	1 cut(s)	487
XspI	CTAG	2 cut(s)	468, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.