Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

57834798 .. 57835860

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00377320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTCGACCTTGAGGTTTGAAGAACGCCGGTGCAACTTACCGGCGGCGATGAATGCCATGGTCGCCGAGCATCCGGAAAAAATCATCAAGGTCTACGTGGACGATATGTTGGTCAAAAGCATAAAGGCCGGCGGACATGTGGCAAACCTCATAATCATATTCGTCATTCTCTTGGCCTACGGTATGCGCCTCAACCTAGAAAAATGCTTCTTCGATGTCACCGCCAGCAAATTTCGGACGCCTGCGCGCATGTTCGTGCCCACACATTCATGTCCTAACAAACCAACTGCCGAGGCAAGTATTGCGAACCCTAAGCACTTGGATCGCTTCGACAAGTGGGCCATCGAGGTCGGCGAGTTCGACATCGATTACAAACCAAGAACCGCCACGAAGGGTCGGGCGGTGGCGGACTTCATTGCTGATCTCACCAAGTGTCGGGATGAACCCAACATAGAAATAGAACCCGGCACGGAAATGATAATTGCGAGAGGGGCTGTCCCCCAACAATCGGACCGGAACCTACACGTGGACGGCTCCGCTAGCGCCAAGCCCGGCGGCGTCGGAGTCATCTTGACAGACCGGGGACCGAGCGTGGAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

200

Amino Acids

22.13

Weight (kDa)

6.96

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	5, 93
AccII	CGCG	1 cut(s)	247
AccIII	TCCGGA	1 cut(s)	73
AciI	CCGC	8 cut(s)	44, 132, 222, 384, 401, 407, 537, 555
AclWI	GGATC	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	230
AcvI	CACGTG	1 cut(s)	526
AcyI	GRCGYC	2 cut(s)	239, 558
AdeI	CACNNNGTG	1 cut(s)	432
AfiI	CCNNNNNNNGG	3 cut(s)	435, 508, 526
AflIII	ACRYGT	2 cut(s)	136, 523
AgsI	TTSAA	1 cut(s)	20
AlwI	GGATC	1 cut(s)	330
Aor13HI	TCCGGA	1 cut(s)	73
AoxI	GGCC	3 cut(s)	126, 174, 339
ApoI	RAATTY	1 cut(s)	230
AspLEI	GCGC	4 cut(s)	189, 247, 249, 545
AspS9I	GGNCC	3 cut(s)	339, 511, 584
AsuC2I	CCSGG	3 cut(s)	465, 552, 581
AsuHPI	GGTGA	2 cut(s)	211, 418
AsuNHI	GCTAGC	1 cut(s)	539
AvaII	GGWCC	2 cut(s)	511, 584
BaeGI	GKGCMC	1 cut(s)	261
BbrPI	CACGTG	1 cut(s)	526
BccI	CCATC	1 cut(s)	350
BceAI	ACGGC	1 cut(s)	547
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BcnI	CCSGG	3 cut(s)	465, 552, 581
BfaI	CTAG	3 cut(s)	197, 540, 601
BfoI	RGCGCY	1 cut(s)	546
BisI	GCNGC	2 cut(s)	45, 556
BlsI	GCNGC	2 cut(s)	46, 557
Bme1390I	CCNGG	3 cut(s)	465, 552, 581
Bme18I	GGWCC	2 cut(s)	511, 584
BmgT120I	GGNCC	3 cut(s)	339, 511, 584
BmiI	GGNNCC	3 cut(s)	518, 535, 585
BmrFI	CCNGG	3 cut(s)	465, 552, 581
BmsI	GCATC	1 cut(s)	79
BmtI	GCTAGC	1 cut(s)	543
Bpu10I	CCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	3 cut(s)	465, 552, 581
Bsa29I	ATCGAT	1 cut(s)	366
BsaAI	YACGTR	2 cut(s)	97, 526
BsaHI	GRCGYC	2 cut(s)	239, 558
BsaJI	CCNNGG	3 cut(s)	57, 291, 580
BsaWI	WCCGGW	2 cut(s)	73, 513
Bsc4I	CCNNNNNNNGG	3 cut(s)	435, 508, 526
Bse118I	RCCGGY	3 cut(s)	27, 40, 128
Bse3DI	GCAATG	1 cut(s)	414
BseAI	TCCGGA	1 cut(s)	73
BseCI	ATCGAT	1 cut(s)	366
BseDI	CCNNGG	3 cut(s)	57, 291, 580
BseGI	GGATG	2 cut(s)	70, 445
BseLI	CCNNNNNNNGG	3 cut(s)	435, 508, 526
BseMI	GCAATG	1 cut(s)	414
BsePI	GCGCGC	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	3 cut(s)	128, 176, 341
BshVI	ATCGAT	1 cut(s)	366
BsiSI	CCGG	8 cut(s)	28, 41, 74, 129, 465, 514, 552, 580
BslFI	GGGAC	2 cut(s)	482, 597
BslI	CCNNNNNNNGG	3 cut(s)	435, 508, 526
BsmFI	GGGAC	2 cut(s)	482, 597
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	3 cut(s)	128, 176, 341
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp13I	TCCGGA	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	322, 421
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	8 cut(s)	44, 132, 222, 384, 401, 407, 537, 555
BspANI	GGCC	3 cut(s)	128, 176, 341
BspDI	ATCGAT	1 cut(s)	366
BspEI	TCCGGA	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	3 cut(s)	518, 535, 585
BspOI	GCTAGC	1 cut(s)	543
BspPI	GGATC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	414
BsrFI	RCCGGY	3 cut(s)	27, 40, 128
BssAI	RCCGGY	3 cut(s)	27, 40, 128
BssECI	CCNNGG	3 cut(s)	57, 291, 580
BssHII	GCGCGC	1 cut(s)	245
BssMI	GATC	2 cut(s)	322, 421
BssNI	GRCGYC	2 cut(s)	239, 558
BssT1I	CCWWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	182
BstACI	GRCGYC	2 cut(s)	239, 558
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstBAI	YACGTR	2 cut(s)	97, 526
BstC8I	GCNNGC	5 cut(s)	130, 226, 243, 247, 541
BstDEI	CTNAG	1 cut(s)	312
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	70, 445
BstFNI	CGCG	1 cut(s)	247
BstH2I	RGCGCY	1 cut(s)	546
BstHHI	GCGC	4 cut(s)	189, 247, 249, 545
BstKTI	GATC	2 cut(s)	325, 424
BstMBI	GATC	2 cut(s)	322, 421
BstMWI	GCNNNNNNNGC	5 cut(s)	53, 62, 302, 491, 540
BstNSI	RCATGY	2 cut(s)	140, 253
BstSCI	CCNGG	3 cut(s)	463, 550, 579
BstSLI	GKGCMC	1 cut(s)	261
BstUI	CGCG	1 cut(s)	247
Bsu15I	ATCGAT	1 cut(s)	366
BsuRI	GGCC	3 cut(s)	128, 176, 341
BsuTUI	ATCGAT	1 cut(s)	366
BtgI	CCRYGG	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	70, 445
Cac8I	GCNNGC	5 cut(s)	130, 226, 243, 247, 541
CfoI	GCGC	4 cut(s)	189, 247, 249, 545
Cfr10I	RCCGGY	3 cut(s)	27, 40, 128
Cfr13I	GGNCC	3 cut(s)	339, 511, 584
ClaI	ATCGAT	1 cut(s)	366
CpoI	CGGWCCG	1 cut(s)	511
CseI	GACGC	2 cut(s)	247, 547
CspI	CGGWCCG	1 cut(s)	511
CviAII	CATG	4 cut(s)	58, 137, 250, 270
CviJI	RGCY	6 cut(s)	128, 176, 341, 494, 534, 550
CviKI_1	RGCY	6 cut(s)	128, 176, 341, 494, 534, 550
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	2 cut(s)	324, 423
DpnII	GATC	2 cut(s)	322, 421
DraIII	CACNNNGTG	1 cut(s)	432
EciI	GGCGGA	2 cut(s)	147, 422
Eco130I	CCWWGG	1 cut(s)	57
Eco47I	GGWCC	2 cut(s)	511, 584
Eco72I	CACGTG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	4 cut(s)	61, 140, 253, 273
FaqI	GGGAC	2 cut(s)	482, 597
FatI	CATG	4 cut(s)	57, 136, 249, 269
FblI	GTMKAC	2 cut(s)	5, 93
Fnu4HI	GCNGC	2 cut(s)	45, 556
FokI	GGATG	2 cut(s)	57, 452
Fsp4HI	GCNGC	2 cut(s)	45, 556
FspBI	CTAG	3 cut(s)	197, 540, 601
GlaI	GCGC	4 cut(s)	188, 246, 248, 544
GluI	GCNGC	2 cut(s)	45, 556
HaeII	RGCGCY	1 cut(s)	546
HaeIII	GGCC	3 cut(s)	128, 176, 341
HapII	CCGG	8 cut(s)	28, 41, 74, 129, 465, 514, 552, 580
HgaI	GACGC	2 cut(s)	247, 547
HhaI	GCGC	4 cut(s)	189, 247, 249, 545
Hin1I	GRCGYC	2 cut(s)	239, 558
Hin1II	CATG	4 cut(s)	61, 140, 253, 273
Hin6I	GCGC	4 cut(s)	187, 245, 247, 543
HinP1I	GCGC	4 cut(s)	187, 245, 247, 543
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	564
HpaII	CCGG	8 cut(s)	28, 41, 74, 129, 465, 514, 552, 580
HphI	GGTGA	2 cut(s)	211, 418
Hpy166II	GTNNAC	4 cut(s)	6, 94, 100, 529
Hpy188I	TCNGA	3 cut(s)	237, 511, 563
Hpy188III	TCNNGA	3 cut(s)	74, 437, 571
Hpy8I	GTNNAC	4 cut(s)	6, 94, 100, 529
Hpy99I	CGWCG	1 cut(s)	563
HpyAV	CCTTC	1 cut(s)	385
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4IV	ACGT	2 cut(s)	96, 525
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	5 cut(s)	53, 62, 302, 491, 540
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	2 cut(s)	96, 525
Hsp92I	GRCGYC	2 cut(s)	239, 558
Hsp92II	CATG	4 cut(s)	61, 140, 253, 273
HspAI	GCGC	4 cut(s)	187, 245, 247, 543
Kpn2I	TCCGGA	1 cut(s)	73
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	322, 421
LmnI	GCTCC	1 cut(s)	539
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	3 cut(s)	197, 540, 601
MaeII	ACGT	2 cut(s)	96, 525
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	324, 423
MboI	GATC	2 cut(s)	322, 421
MboII	GAAGA	2 cut(s)	32, 202
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	2 cut(s)	230, 480
MlyI	GAGTC	1 cut(s)	573
MmeI	TCCRAC	1 cut(s)	541
MnlI	CCTC	6 cut(s)	6, 158, 200, 286, 340, 482
MroI	TCCGGA	1 cut(s)	73
MroNI	GCCGGC	1 cut(s)	128
MslI	CAYNNNNRTG	3 cut(s)	254, 268, 473
MspI	CCGG	8 cut(s)	28, 41, 74, 129, 465, 514, 552, 580
MspR9I	CCNGG	3 cut(s)	465, 552, 581
Mva1269I	GAATGC	1 cut(s)	58
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	5 cut(s)	53, 62, 302, 491, 540
NaeI	GCCGGC	1 cut(s)	130
NciI	CCSGG	3 cut(s)	465, 552, 581
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	322, 421
NgoMIV	GCCGGC	1 cut(s)	128
NheI	GCTAGC	1 cut(s)	539
NlaIII	CATG	4 cut(s)	61, 140, 253, 273
NlaIV	GGNNCC	3 cut(s)	518, 535, 585
NmeAIII	GCCGAG	2 cut(s)	91, 316
NmuCI	GTSAC	1 cut(s)	217
NspI	RCATGY	2 cut(s)	140, 253
PauI	GCGCGC	1 cut(s)	245
PciI	ACATGT	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	2 cut(s)	351, 357
PctI	GAATGC	1 cut(s)	58
PdiI	GCCGGC	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	46, 557
PleI	GAGTC	1 cut(s)	572
PmaCI	CACGTG	1 cut(s)	526
PmlI	CACGTG	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	572
Ppu21I	YACGTR	2 cut(s)	97, 526
PscI	ACATGT	1 cut(s)	136
PspCI	CACGTG	1 cut(s)	526
PspN4I	GGNNCC	3 cut(s)	518, 535, 585
PspPI	GGNCC	3 cut(s)	339, 511, 584
PteI	GCGCGC	1 cut(s)	245
RseI	CAYNNNNRTG	3 cut(s)	254, 268, 473
Rsr2I	CGGWCCG	1 cut(s)	511
RsrII	CGGWCCG	1 cut(s)	511
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	2 cut(s)	45, 556
Sau3AI	GATC	2 cut(s)	322, 421
Sau96I	GGNCC	3 cut(s)	339, 511, 584
SchI	GAGTC	1 cut(s)	573
ScrFI	CCNGG	3 cut(s)	465, 552, 581
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	9 cut(s)	11, 17, 93, 99, 150, 198, 351, 522, 528
SfaNI	GCATC	1 cut(s)	79
SgrAI	CRCCGGYG	1 cut(s)	27
SinI	GGWCC	2 cut(s)	511, 584
SmiMI	CAYNNNNRTG	3 cut(s)	254, 268, 473
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	2 cut(s)	230, 480
SsiI	CCGC	8 cut(s)	44, 132, 222, 384, 401, 407, 537, 555
SspMI	CTAG	3 cut(s)	197, 540, 601
StyD4I	CCNGG	3 cut(s)	463, 550, 579
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	1 cut(s)	182
TaiI	ACGT	2 cut(s)	99, 528
TaqI	TCGA	6 cut(s)	5, 213, 330, 345, 360, 366
TaqII	GACCGA	1 cut(s)	601
TasI	AATT	2 cut(s)	230, 480
TauI	GCSGC	2 cut(s)	47, 558
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	4 cut(s)	65, 258, 403, 456
TspGWI	ACGGA	1 cut(s)	485
VpaK11BI	GGWCC	2 cut(s)	511, 584
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	2 cut(s)	140, 253
XmiI	GTMKAC	2 cut(s)	5, 93
XspI	CTAG	3 cut(s)	197, 540, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.