Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

45283344 .. 45285263

Gene Structure 1920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G021010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1671 bp

ATGCGCCTCAACCCAGAAAAATGTTTCTTTGCAGTCACCGCCAGCAAATTTCTGGGTTACATTGTCAGCGAGCGAGGAATCGAGGCTAACCCAGACAAGGTGCAGGCCATCCTTAACATGTCGGACCCCAAGTATAAGGTAGACAAGGTCATCGACTGGAACCCAGAGTGTCGGGCGGCGTTCCAGAGCCTAAAAGAATATCTGGCGGCGGTCCCTCTCCTTTCTGTCCCTGTACAAGGAGAAACGTTATTCATATACCTGGCGGTCTCGGCAACTGCAATAAGTTGCGCCATTGTTCGGCGGGAAGGCCAGGATGAACTCCCGGTATTTTACGCCGGCAGAGGTATGAACGGAGCAGAAACAAGGTATCCACCATTGGAACAGCTGGCACTTGCACTTATCGTTGCCGCCAGACGCCTTCGGCAGTATTTCCAGGCTCACACGATCCATGTGTTGACCAATCAACCGCTGAGACAGGTGATGCAGAGCCCTGAACACTCGGGGCGCCTCAGTAAGTGGGCGATTGAGCTCAGCGAATTTGACATCGAGTACAAGCCAAGAACCGCCATGAAGGGCCAGGCAGCCAGCGGCGCCGGAGTCATCTTAACCGGACCTGGGGGACTAAACGCAGAGTACGCGTTGAAGTTCAACTTCAAAGCTTCAAACAATATGGCGGAGTACGAGGCGCTCATCGCCGGCTTACTCCTCGCCATTGACTCAGGAGCTGACAGCGTCAACATATTCAGCGACTCTCAACTAGTCGTCAACCAGGTCAATGACAGTTTCCAAGCCAAGGACCAGCAGCTAGCGGCGTATTTGGGGTACGTCAAAACATTGCTAAAAAAGTTCAAATTCCATACAATCACACAGATCCCCAGGGAAAAGAACGCTAAGGCTGATTCACTGGCGAGACTGGCGACCGCCCAACCACATCAGAGTCCAGCGGACACAAGGGTGGAGTGCCTGGACAAGCCAAGTATCACAAAGACTCTGGCGGAAATCTTCAACGTTCAGGTCAACCCCAGCTGGATGGATGAGATCATTGCATATAAGCGCAACGGAACGTTGCCAGAAGATAAGGTCCAGGCAAGACAGCTCCAGCGGAGAGCAACCCGCTACAACATTCAGCACGGCAAGCTTTACCGCCAGGGATTCACCCATCCTAACCTCCGCTGTCTAACCCCAGAGGAAGGAAGGGTTGTCCTAACTGAAATCCATGGCGGGGAATGCGGAAATCACTCGGGCGCCAGATCCCTGACCAATCGCACAATGCGACAAGGATACTTCTGGCCCACACTTGGCGATGACGCTCGGCGGATTTCAAGGTCTTGCCACAAATGCCAACAGTTTGCAGATCTCCCGCATGCACCAGCGGAACCACTGTCAATCATCGTGGGCCCATGGATTCATTCCACGTGGGGCCTTGACCTGATGGGAAAGTTCCAAACTGCCAAGGGTCAGTTCAAATACATCATTGTTGCCATTGACTACAACAGCAAGTGGATAGAGGCAGAGCCACTGACGGCAATAACTACCGCCAAGGTAATTCACTTCCTTTGGAAGAATATCTATTGCCGCTACGGTGTCCCACACACAATCATCACAGACAACGGCACACAGTTCAACAATGACGAGCTCATCTCTTTCACCACCAACTGGGCACCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

556

Amino Acids

62.29

Weight (kDa)

8.92

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	53 - 151	3.4e-16	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	82 - 180	3.7e-16	RNase H-like domain found in reverse transcriptase
RVT_3	PF13456	191 - 305	8.7e-20	Reverse transcriptase-like
Integrase_H2C2	PF17921	399 - 450	1.1e-08	Integrase zinc binding domain
rve	PF00665	472 - 553	1.6e-09	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	504, 590, 1244, 1660
AccB7I	CCANNNNNTGG	1 cut(s)	1656
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	1 cut(s)	638
AclI	AACGTT	3 cut(s)	245, 1008, 1064
AclWI	GGATC	3 cut(s)	439, 865, 1245
AcsI	RAATTY	3 cut(s)	47, 536, 851
AcvI	CACGTG	1 cut(s)	1416
AcyI	GRCGYC	4 cut(s)	415, 505, 591, 1245
AfaI	GTAC	5 cut(s)	234, 551, 635, 680, 824
AfiI	CCNNNNNNNGG	9 cut(s)	97, 236, 297, 615, 793, 1190, 1222, 1298, 1656
AflIII	ACRYGT	2 cut(s)	117, 636
AgsI	TTSAA	9 cut(s)	643, 649, 655, 663, 850, 1006, 1323, 1465, 1624
AhlI	ACTAGT	1 cut(s)	757
AjuI	GAANNNNNNNTTGG	2 cut(s)	1445, 1477
AleI	CACNNNNGTG	1 cut(s)	953
AluBI	AGCT	9 cut(s)	385, 529, 659, 725, 805, 1026, 1096, 1138, 1636
AluI	AGCT	9 cut(s)	385, 529, 659, 725, 805, 1026, 1096, 1138, 1636
Alw21I	GWGCWC	2 cut(s)	531, 1638
Alw26I	GTCTC	3 cut(s)	271, 466, 904
AlwI	GGATC	3 cut(s)	439, 865, 1245
AlwNI	CAGNNNCTG	1 cut(s)	725
Ama87I	CYCGRG	2 cut(s)	499, 1240
AoxI	GGCC	6 cut(s)	105, 307, 574, 1289, 1396, 1420
ApaI	GGGCCC	1 cut(s)	1400
ApeKI	GCWGC	2 cut(s)	581, 802
ApoI	RAATTY	3 cut(s)	47, 536, 851
AspLEI	GCGC	7 cut(s)	6, 290, 507, 593, 688, 1056, 1247
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	4 cut(s)	28, 490, 1147, 1639
AsuNHI	GCTAGC	1 cut(s)	805
AvaI	CYCGRG	2 cut(s)	499, 1240
AvaII	GGWCC	5 cut(s)	124, 211, 611, 796, 1081
BaeGI	GKGCMC	2 cut(s)	1400, 1663
BanI	GGYRCC	4 cut(s)	504, 590, 1244, 1660
BanII	GRGCYC	4 cut(s)	491, 531, 1400, 1638
BbrPI	CACGTG	1 cut(s)	1416
Bbv12I	GWGCWC	2 cut(s)	531, 1638
BbvI	GCAGC	2 cut(s)	593, 814
BccI	CCATC	4 cut(s)	116, 1024, 1167, 1426
BceAI	ACGGC	3 cut(s)	1147, 1539, 1627
BciVI	GTATCC	2 cut(s)	378, 1274
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	3 cut(s)	271, 466, 904
BcuI	ACTAGT	1 cut(s)	757
BfaI	CTAG	2 cut(s)	758, 806
BfoI	RGCGCY	4 cut(s)	508, 594, 689, 1248
BfuI	GTATCC	2 cut(s)	378, 1274
BglII	AGATCT	1 cut(s)	1354
BisI	GCNGC	8 cut(s)	177, 207, 408, 582, 589, 803, 810, 1576
BlpI	GCTNAGC	1 cut(s)	530
BlsI	GCNGC	8 cut(s)	178, 208, 409, 583, 590, 804, 811, 1577
Bme18I	GGWCC	5 cut(s)	124, 211, 611, 796, 1081
BmeT110I	CYCGRG	2 cut(s)	499, 1240
BmrI	ACTGGG	1 cut(s)	1666
BmsI	GCATC	1 cut(s)	471
BmtI	GCTAGC	1 cut(s)	809
BmuI	ACTGGG	1 cut(s)	1666
BplI	GAGNNNNNCTC	2 cut(s)	1625, 1657
BpmI	CTGGAG	1 cut(s)	1082
Bpu10I	CCTNAGC	1 cut(s)	891
Bpu1102I	GCTNAGC	1 cut(s)	530
BpuMI	CCSGG	1 cut(s)	323
BsaAI	YACGTR	1 cut(s)	1416
BsaHI	GRCGYC	4 cut(s)	415, 505, 591, 1245
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	9 cut(s)	614, 792, 875, 876, 1147, 1216, 1400, 1452, 1539
BsaWI	WCCGGW	1 cut(s)	608
Bsc4I	CCNNNNNNNGG	9 cut(s)	97, 236, 297, 615, 793, 1190, 1222, 1298, 1656
Bse118I	RCCGGY	2 cut(s)	335, 695
Bse1I	ACTGG	4 cut(s)	161, 909, 918, 1661
Bse3DI	GCAATG	2 cut(s)	833, 1041
BseDI	CCNNGG	9 cut(s)	614, 792, 875, 876, 1147, 1216, 1400, 1452, 1539
BseGI	GGATG	5 cut(s)	108, 319, 1035, 1039, 1159
BseLI	CCNNNNNNNGG	9 cut(s)	97, 236, 297, 615, 793, 1190, 1222, 1298, 1656
BseMI	GCAATG	2 cut(s)	833, 1041
BseMII	CTCAG	4 cut(s)	461, 523, 544, 732
BseNI	ACTGG	4 cut(s)	161, 909, 918, 1661
BseRI	GAGGAG	1 cut(s)	695
BseSI	GKGCMC	2 cut(s)	1400, 1663
BseXI	GCAGC	2 cut(s)	593, 814
BseYI	CCCAGC	1 cut(s)	1022
BsgI	GTGCAG	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	638
Bsh1285I	CGRYCG	1 cut(s)	921
BshFI	GGCC	6 cut(s)	107, 309, 576, 1291, 1398, 1422
BshNI	GGYRCC	4 cut(s)	504, 590, 1244, 1660
BsiEI	CGRYCG	1 cut(s)	921
BsiHKAI	GWGCWC	2 cut(s)	531, 1638
BsiHKCI	CYCGRG	2 cut(s)	499, 1240
BsiSI	CCGG	5 cut(s)	323, 336, 594, 609, 696
BslFI	GGGAC	4 cut(s)	197, 212, 633, 1571
BslI	CCNNNNNNNGG	9 cut(s)	97, 236, 297, 615, 793, 1190, 1222, 1298, 1656
BsmAI	GTCTC	3 cut(s)	271, 466, 904
BsmFI	GGGAC	4 cut(s)	197, 212, 633, 1571
BsmI	GAATGC	1 cut(s)	1232
BsnI	GGCC	6 cut(s)	107, 309, 576, 1291, 1398, 1422
Bso31I	GGTCTC	1 cut(s)	271
BsoBI	CYCGRG	2 cut(s)	499, 1240
Bsp120I	GGGCCC	1 cut(s)	1396
Bsp1286I	GDGCHC	5 cut(s)	491, 531, 1400, 1638, 1663
Bsp1407I	TGTACA	1 cut(s)	232
Bsp143I	GATC	5 cut(s)	444, 870, 1038, 1250, 1354
Bsp1720I	GCTNAGC	1 cut(s)	530
Bsp19I	CCATGG	2 cut(s)	1216, 1400
BspANI	GGCC	6 cut(s)	107, 309, 576, 1291, 1398, 1422
BspCNI	CTCAG	4 cut(s)	462, 522, 543, 731
BspFNI	CGCG	1 cut(s)	638
BspOI	GCTAGC	1 cut(s)	809
BspPI	GGATC	3 cut(s)	439, 865, 1245
BspT107I	GGYRCC	4 cut(s)	504, 590, 1244, 1660
BspTNI	GGTCTC	1 cut(s)	271
BsrDI	GCAATG	2 cut(s)	833, 1041
BsrFI	RCCGGY	2 cut(s)	335, 695
BsrGI	TGTACA	1 cut(s)	232
BsrI	ACTGG	4 cut(s)	161, 909, 918, 1661
BssAI	RCCGGY	2 cut(s)	335, 695
BssECI	CCNNGG	9 cut(s)	614, 792, 875, 876, 1147, 1216, 1400, 1452, 1539
BssMI	GATC	5 cut(s)	444, 870, 1038, 1250, 1354
BssNI	GRCGYC	4 cut(s)	415, 505, 591, 1245
BssT1I	CCWWGG	5 cut(s)	792, 1216, 1400, 1452, 1539
Bst4CI	ACNGT	5 cut(s)	782, 1347, 1383, 1583, 1620
BstACI	GRCGYC	4 cut(s)	415, 505, 591, 1245
BstAUI	TGTACA	1 cut(s)	232
BstBAI	YACGTR	1 cut(s)	1416
BstDEI	CTNAG	5 cut(s)	470, 509, 530, 718, 891
BstDSI	CCRYGG	2 cut(s)	1216, 1400
BstENI	CCTNNNNNAGG	1 cut(s)	234
BstF5I	GGATG	5 cut(s)	108, 319, 1035, 1039, 1159
BstFNI	CGCG	1 cut(s)	638
BstH2I	RGCGCY	4 cut(s)	508, 594, 689, 1248
BstHHI	GCGC	7 cut(s)	6, 290, 507, 593, 688, 1056, 1247
BstKTI	GATC	5 cut(s)	447, 873, 1041, 1253, 1357
BstMAI	GTCTC	3 cut(s)	271, 466, 904
BstMBI	GATC	5 cut(s)	444, 870, 1038, 1250, 1354
BstMCI	CGRYCG	1 cut(s)	921
BstMWI	GCNNNNNNNGC	9 cut(s)	38, 269, 590, 635, 692, 914, 1135, 1227, 1338
BstNSI	RCATGY	2 cut(s)	121, 1367
BstSLI	GKGCMC	2 cut(s)	1400, 1663
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	2 cut(s)	593, 814
BstX2I	RGATCY	3 cut(s)	870, 1250, 1354
BstXI	CCANNNNNNTGG	1 cut(s)	1030
BstYI	RGATCY	3 cut(s)	870, 1250, 1354
BsuI	GTATCC	2 cut(s)	378, 1274
BsuRI	GGCC	6 cut(s)	107, 309, 576, 1291, 1398, 1422
BtgI	CCRYGG	2 cut(s)	1216, 1400
BtgZI	GCGATG	2 cut(s)	676, 1317
BtsCI	GGATG	5 cut(s)	108, 319, 1035, 1039, 1159
BtsIMutI	CAGTG	3 cut(s)	902, 1379, 1517
CaiI	CAGNNNCTG	1 cut(s)	725
CfoI	GCGC	7 cut(s)	6, 290, 507, 593, 688, 1056, 1247
Cfr10I	RCCGGY	2 cut(s)	335, 695
CseI	GACGC	3 cut(s)	423, 721, 1316
CsiI	ACCWGGT	1 cut(s)	768
Csp6I	GTAC	5 cut(s)	233, 550, 634, 679, 823
CspCI	CAANNNNNGTGG	2 cut(s)	1374, 1409
CviAII	CATG	6 cut(s)	118, 449, 568, 1217, 1364, 1401
CviQI	GTAC	5 cut(s)	233, 550, 634, 679, 823
DdeI	CTNAG	5 cut(s)	470, 509, 530, 718, 891
DinI	GGCGCC	3 cut(s)	506, 592, 1246
DpnI	GATC	5 cut(s)	446, 872, 1040, 1252, 1356
DpnII	GATC	5 cut(s)	444, 870, 1038, 1250, 1354
EciI	GGCGGA	3 cut(s)	689, 1010, 1330
Ecl136II	GAGCTC	2 cut(s)	529, 1636
Eco130I	CCWWGG	5 cut(s)	792, 1216, 1400, 1452, 1539
Eco24I	GRGCYC	4 cut(s)	491, 531, 1400, 1638
Eco31I	GGTCTC	1 cut(s)	271
Eco47I	GGWCC	5 cut(s)	124, 211, 611, 796, 1081
Eco53kI	GAGCTC	2 cut(s)	529, 1636
Eco72I	CACGTG	1 cut(s)	1416
Eco88I	CYCGRG	2 cut(s)	499, 1240
EcoICRI	GAGCTC	2 cut(s)	529, 1636
EcoNI	CCTNNNNNAGG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	1420
EcoT14I	CCWWGG	5 cut(s)	792, 1216, 1400, 1452, 1539
EcoT38I	GRGCYC	4 cut(s)	491, 531, 1400, 1638
EgeI	GGCGCC	3 cut(s)	506, 592, 1246
EheI	GGCGCC	3 cut(s)	506, 592, 1246
ErhI	CCWWGG	5 cut(s)	792, 1216, 1400, 1452, 1539
FaeI	CATG	6 cut(s)	121, 452, 571, 1220, 1367, 1404
FalI	AAGNNNNNCTT	2 cut(s)	635, 667
FaqI	GGGAC	4 cut(s)	197, 212, 633, 1571
FatI	CATG	6 cut(s)	117, 448, 567, 1216, 1363, 1400
FauI	CCCGC	4 cut(s)	294, 1121, 1214, 1368
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	8 cut(s)	177, 207, 408, 582, 589, 803, 810, 1576
FokI	GGATG	5 cut(s)	95, 326, 1042, 1046, 1146
FriOI	GRGCYC	4 cut(s)	491, 531, 1400, 1638
Fsp4HI	GCNGC	8 cut(s)	177, 207, 408, 582, 589, 803, 810, 1576
FspBI	CTAG	2 cut(s)	758, 806
GlaI	GCGC	7 cut(s)	5, 289, 506, 592, 687, 1055, 1246
GluI	GCNGC	8 cut(s)	177, 207, 408, 582, 589, 803, 810, 1576
GsaI	CCCAGC	1 cut(s)	1026
GsuI	CTGGAG	1 cut(s)	1082
HaeII	RGCGCY	4 cut(s)	508, 594, 689, 1248
HaeIII	GGCC	6 cut(s)	107, 309, 576, 1291, 1398, 1422
HapII	CCGG	5 cut(s)	323, 336, 594, 609, 696
HgaI	GACGC	3 cut(s)	423, 721, 1316
HhaI	GCGC	7 cut(s)	6, 290, 507, 593, 688, 1056, 1247
Hin1I	GRCGYC	4 cut(s)	415, 505, 591, 1245
Hin1II	CATG	6 cut(s)	121, 452, 571, 1220, 1367, 1404
Hin6I	GCGC	7 cut(s)	4, 288, 505, 591, 686, 1054, 1245
HinP1I	GCGC	7 cut(s)	4, 288, 505, 591, 686, 1054, 1245
HincII	GTYRAC	4 cut(s)	456, 736, 766, 1018
HindII	GTYRAC	4 cut(s)	456, 736, 766, 1018
HindIII	AAGCTT	2 cut(s)	657, 1136
HinfI	GANTC	9 cut(s)	78, 597, 716, 749, 899, 937, 988, 1152, 1405
HpaII	CCGG	5 cut(s)	323, 336, 594, 609, 696
HphI	GGTGA	4 cut(s)	28, 490, 1147, 1639
Hpy166II	GTNNAC	5 cut(s)	142, 456, 736, 766, 1018
Hpy188I	TCNGA	2 cut(s)	124, 936
Hpy188III	TCNNGA	2 cut(s)	184, 720
Hpy8I	GTNNAC	5 cut(s)	142, 456, 736, 766, 1018
HpyAV	CCTTC	5 cut(s)	299, 428, 565, 1184, 1188
HpyCH4III	ACNGT	5 cut(s)	782, 1347, 1383, 1583, 1620
HpyCH4IV	ACGT	5 cut(s)	245, 825, 1008, 1064, 1415
HpyCH4V	TGCA	8 cut(s)	32, 103, 278, 395, 484, 1046, 1352, 1367
HpyF10VI	GCNNNNNNNGC	9 cut(s)	38, 269, 590, 635, 692, 914, 1135, 1227, 1338
HpyF3I	CTNAG	5 cut(s)	470, 509, 530, 718, 891
HpySE526I	ACGT	5 cut(s)	245, 825, 1008, 1064, 1415
Hsp92I	GRCGYC	4 cut(s)	415, 505, 591, 1245
Hsp92II	CATG	6 cut(s)	121, 452, 571, 1220, 1367, 1404
HspAI	GCGC	7 cut(s)	4, 288, 505, 591, 686, 1054, 1245
KasI	GGCGCC	3 cut(s)	504, 590, 1244
KroI	GCCGGC	2 cut(s)	335, 695
KroNI	GCCGGC	2 cut(s)	337, 697
Kzo9I	GATC	5 cut(s)	444, 870, 1038, 1250, 1354
LmnI	GCTCC	3 cut(s)	353, 722, 1101
Lsp1109I	GCAGC	2 cut(s)	593, 814
LweI	GCATC	1 cut(s)	471
MabI	ACCWGGT	1 cut(s)	768
MaeI	CTAG	2 cut(s)	758, 806
MaeII	ACGT	5 cut(s)	245, 825, 1008, 1064, 1415
MaeIII	GTNAC	2 cut(s)	34, 56
MalI	GATC	5 cut(s)	446, 872, 1040, 1252, 1356
MboI	GATC	5 cut(s)	444, 870, 1038, 1250, 1354
MboII	GAAGA	3 cut(s)	994, 1085, 1573
MflI	RGATCY	3 cut(s)	870, 1250, 1354
MhlI	GDGCHC	5 cut(s)	491, 531, 1400, 1638, 1663
MluCI	AATT	4 cut(s)	47, 536, 851, 1545
MluI	ACGCGT	1 cut(s)	636
Mly113I	GGCGCC	3 cut(s)	505, 591, 1245
MlyI	GAGTC	5 cut(s)	606, 710, 743, 946, 982
MmeI	TCCRAC	1 cut(s)	102
MroNI	GCCGGC	2 cut(s)	335, 695
MseI	TTAA	2 cut(s)	114, 605
MslI	CAYNNNNRTG	1 cut(s)	953
MspA1I	CMGCKG	8 cut(s)	385, 469, 588, 944, 1026, 1102, 1173, 1373
MspI	CCGG	5 cut(s)	323, 336, 594, 609, 696
Mva1269I	GAATGC	1 cut(s)	1232
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	9 cut(s)	38, 269, 590, 635, 692, 914, 1135, 1227, 1338
NaeI	GCCGGC	2 cut(s)	337, 697
NarI	GGCGCC	3 cut(s)	505, 591, 1245
NciI	CCSGG	1 cut(s)	323
NcoI	CCATGG	2 cut(s)	1216, 1400
NdeII	GATC	5 cut(s)	444, 870, 1038, 1250, 1354
NgoMIV	GCCGGC	2 cut(s)	335, 695
NheI	GCTAGC	1 cut(s)	805
NlaIII	CATG	6 cut(s)	121, 452, 571, 1220, 1367, 1404
NmeAIII	GCCGAG	2 cut(s)	248, 1291
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	2 cut(s)	121, 1367
OliI	CACNNNNGTG	1 cut(s)	953
PaeI	GCATGC	1 cut(s)	1367
PasI	CCCWGGG	1 cut(s)	876
PciI	ACATGT	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	1270
PctI	GAATGC	1 cut(s)	1232
PdiI	GCCGGC	2 cut(s)	337, 697
PfeI	GAWTC	4 cut(s)	78, 899, 1152, 1405
PflFI	GACNNNGTC	2 cut(s)	146, 731
PflMI	CCANNNNNTGG	1 cut(s)	1656
PkrI	GCNGC	8 cut(s)	178, 208, 409, 583, 590, 804, 811, 1577
PleI	GAGTC	5 cut(s)	605, 710, 743, 945, 982
PluTI	GGCGCC	3 cut(s)	508, 594, 1248
PmaCI	CACGTG	1 cut(s)	1416
PmlI	CACGTG	1 cut(s)	1416
PpsI	GAGTC	5 cut(s)	605, 710, 743, 945, 982
Ppu21I	YACGTR	1 cut(s)	1416
PscI	ACATGT	1 cut(s)	117
Psp124BI	GAGCTC	2 cut(s)	531, 1638
Psp1406I	AACGTT	3 cut(s)	245, 1008, 1064
PspCI	CACGTG	1 cut(s)	1416
PspFI	CCCAGC	1 cut(s)	1022
PspOMI	GGGCCC	1 cut(s)	1396
PstNI	CAGNNNCTG	1 cut(s)	725
PsuI	RGATCY	3 cut(s)	870, 1250, 1354
PsyI	GACNNNGTC	2 cut(s)	146, 731
PvuII	CAGCTG	2 cut(s)	385, 1026
RsaI	GTAC	5 cut(s)	234, 551, 635, 680, 824
RsaNI	GTAC	5 cut(s)	233, 550, 634, 679, 823
RseI	CAYNNNNRTG	1 cut(s)	953
SacI	GAGCTC	2 cut(s)	531, 1638
SaqAI	TTAA	2 cut(s)	114, 605
SatI	GCNGC	8 cut(s)	177, 207, 408, 582, 589, 803, 810, 1576
Sau3AI	GATC	5 cut(s)	444, 870, 1038, 1250, 1354
SchI	GAGTC	5 cut(s)	606, 710, 743, 946, 982
SduI	GDGCHC	5 cut(s)	491, 531, 1400, 1638, 1663
SexAI	ACCWGGT	1 cut(s)	768
SfaNI	GCATC	1 cut(s)	471
SfoI	GGCGCC	3 cut(s)	506, 592, 1246
SinI	GGWCC	5 cut(s)	124, 211, 611, 796, 1081
SmiMI	CAYNNNNRTG	1 cut(s)	953
SpeI	ACTAGT	1 cut(s)	757
SphI	GCATGC	1 cut(s)	1367
Sse9I	AATT	4 cut(s)	47, 536, 851, 1545
SspDI	GGCGCC	3 cut(s)	504, 590, 1244
SspMI	CTAG	2 cut(s)	758, 806
SstI	GAGCTC	2 cut(s)	531, 1638
StyI	CCWWGG	5 cut(s)	792, 1216, 1400, 1452, 1539
TaaI	ACNGT	5 cut(s)	782, 1347, 1383, 1583, 1620
TaiI	ACGT	5 cut(s)	248, 828, 1011, 1067, 1418
TaqI	TCGA	3 cut(s)	81, 153, 546
TasI	AATT	4 cut(s)	47, 536, 851, 1545
TatI	WGTACW	2 cut(s)	232, 549
TauI	GCSGC	6 cut(s)	179, 209, 410, 591, 812, 1578
TfiI	GAWTC	4 cut(s)	78, 899, 1152, 1405
Tru1I	TTAA	2 cut(s)	114, 605
Tru9I	TTAA	2 cut(s)	114, 605
TscAI	CASTG	3 cut(s)	909, 1386, 1524
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	2 cut(s)	581, 802
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	5 cut(s)	241, 330, 362, 584, 1397
TspGWI	ACGGA	2 cut(s)	366, 1074
TspRI	CASTG	3 cut(s)	909, 1386, 1524
Tth111I	GACNNNGTC	2 cut(s)	146, 731
Van91I	CCANNNNNTGG	1 cut(s)	1656
VpaK11BI	GGWCC	5 cut(s)	124, 211, 611, 796, 1081
XagI	CCTNNNNNAGG	1 cut(s)	234
XapI	RAATTY	3 cut(s)	47, 536, 851
XceI	RCATGY	2 cut(s)	121, 1367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	2 cut(s)	758, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.