Rroxscaffold_3G00228140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000250
Physical Location & Seq
Forward (+)
12486359 .. 12488686
2328 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00228140.1

Sequence Viewer

Length: 282 bp
ATGGATGAAATAATTGAATACAAGCGCAATAGAACACCGCCAACCGACAAGGTCGAAGCAAGGCAACTTAAGTGGAGGGTAATCCGCTATAACATCCGAATGACAAGCTTTGCTACCAAGGGTTCACCCATCCCAACCTCCGGTGTCCGACCCCGGAGGAGGAAAGGTTGTTCTAGCAATGATACAAGCCGGGGAGTATGGAAACCACTCGGGCGCCGGGTCTCTAGCCAATTGCACCATACGGCAAGGCTACTTCTAGCCCACGCTCGGCGACGACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.86

Weight (kDa)

11.86

Isoelectric Point (pI)

66.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica Prupe.6G166700_v2.0.a1
pyrus_communis pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis RchiOBHm_Chr5g0018261
rosa_laevigata RLG00000022447
rosa_multiflora Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa Rorug02G0381000
rosa_samantha Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 213
AciI CCGC 2 cut(s) 38, 85
AcyI GRCGYC 1 cut(s) 214
AfiI CCNNNNNNNGG 3 cut(s) 140, 159, 267
AflII CTTAAG 1 cut(s) 68
AgsI TTSAA 1 cut(s) 17
AloI GAACNNNNNNTCC 2 cut(s) 154, 186
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 226
Ama87I CYCGRG 1 cut(s) 209
AspLEI GCGC 2 cut(s) 27, 216
AsuC2I CCSGG 3 cut(s) 154, 191, 218
AsuHPI GGTGA 1 cut(s) 117
AvaI CYCGRG 1 cut(s) 209
BanI GGYRCC 1 cut(s) 213
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 258
BcnI CCSGG 3 cut(s) 154, 191, 218
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 3 cut(s) 174, 225, 257
BfoI RGCGCY 1 cut(s) 217
BfrI CTTAAG 1 cut(s) 68
Bme1390I CCNGG 3 cut(s) 154, 191, 218
BmeT110I CYCGRG 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 3 cut(s) 154, 191, 218
BpuMI CCSGG 3 cut(s) 154, 191, 218
BsaHI GRCGYC 1 cut(s) 214
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 3 cut(s) 117, 152, 190
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 159, 267
Bse3DI GCAATG 1 cut(s) 184
BseDI CCNNGG 3 cut(s) 117, 152, 190
BseGI GGATG 3 cut(s) 10, 93, 129
BseLI CCNNNNNNNGG 3 cut(s) 140, 159, 267
BseMI GCAATG 1 cut(s) 184
BseRI GAGGAG 1 cut(s) 172
BshNI GGYRCC 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 4 cut(s) 141, 154, 190, 217
BslI CCNNNNNNNGG 3 cut(s) 140, 159, 267
BsmAI GTCTC 1 cut(s) 226
Bso31I GGTCTC 1 cut(s) 226
BsoBI CYCGRG 1 cut(s) 209
BspACI CCGC 2 cut(s) 38, 85
BspLI GGNNCC 1 cut(s) 215
BspT107I GGYRCC 1 cut(s) 213
BspTI CTTAAG 1 cut(s) 68
BspTNI GGTCTC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 184
BssECI CCNNGG 3 cut(s) 117, 152, 190
BssNI GRCGYC 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 117
BstACI GRCGYC 1 cut(s) 214
BstAFI CTTAAG 1 cut(s) 68
BstF5I GGATG 3 cut(s) 10, 93, 129
BstH2I RGCGCY 1 cut(s) 217
BstHHI GCGC 2 cut(s) 27, 216
BstMAI GTCTC 1 cut(s) 226
BstSCI CCNGG 3 cut(s) 152, 189, 216
BtsCI GGATG 3 cut(s) 10, 93, 129
CfoI GCGC 2 cut(s) 27, 216
CspCI CAANNNNNGTGG 2 cut(s) 53, 88
CviJI RGCY 5 cut(s) 108, 189, 228, 250, 260
CviKI_1 RGCY 5 cut(s) 108, 189, 228, 250, 260
DinI GGCGCC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 226
Eco88I CYCGRG 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 117
EgeI GGCGCC 1 cut(s) 215
EheI GGCGCC 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 117
FaiI YATR 3 cut(s) 90, 199, 240
FokI GGATG 3 cut(s) 17, 80, 116
FspBI CTAG 3 cut(s) 174, 225, 257
GlaI GCGC 2 cut(s) 26, 215
HaeII RGCGCY 1 cut(s) 217
HapII CCGG 4 cut(s) 141, 154, 190, 217
HhaI GCGC 2 cut(s) 27, 216
Hin1I GRCGYC 1 cut(s) 214
Hin6I GCGC 2 cut(s) 25, 214
HinP1I GCGC 2 cut(s) 25, 214
HindIII AAGCTT 1 cut(s) 106
HpaII CCGG 4 cut(s) 141, 154, 190, 217
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 125
Hpy188I TCNGA 2 cut(s) 98, 149
Hpy8I GTNNAC 1 cut(s) 125
Hpy99I CGWCG 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 235
Hsp92I GRCGYC 1 cut(s) 214
HspAI GCGC 2 cut(s) 25, 214
KasI GGCGCC 1 cut(s) 213
LpnPI CCDG 4 cut(s) 154, 167, 203, 230
MaeI CTAG 3 cut(s) 174, 225, 257
MfeI CAATTG 1 cut(s) 230
MluCI AATT 2 cut(s) 12, 230
Mly113I GGCGCC 1 cut(s) 214
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 4 cut(s) 69, 148, 150, 153
MseI TTAA 2 cut(s) 69, 280
MslI CAYNNNNRTG 1 cut(s) 98
MspCI CTTAAG 1 cut(s) 68
MspI CCGG 4 cut(s) 141, 154, 190, 217
MspR9I CCNGG 3 cut(s) 154, 191, 218
MunI CAATTG 1 cut(s) 230
NarI GGCGCC 1 cut(s) 214
NciI CCSGG 3 cut(s) 154, 191, 218
NlaIV GGNNCC 1 cut(s) 215
NmeAIII GCCGAG 1 cut(s) 247
PflFI GACNNNGTC 1 cut(s) 50
PluTI GGCGCC 1 cut(s) 217
PspN4I GGNNCC 1 cut(s) 215
PsyI GACNNNGTC 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 2 cut(s) 69, 280
ScrFI CCNGG 3 cut(s) 154, 191, 218
SetI ASST 5 cut(s) 54, 110, 140, 169, 280
SfoI GGCGCC 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 2 cut(s) 12, 230
SsiI CCGC 2 cut(s) 38, 85
SspDI GGCGCC 1 cut(s) 213
SspMI CTAG 3 cut(s) 174, 225, 257
StyD4I CCNGG 3 cut(s) 152, 189, 216
StyI CCWWGG 1 cut(s) 117
TaqI TCGA 1 cut(s) 54
TasI AATT 2 cut(s) 12, 230
Tru1I TTAA 2 cut(s) 69, 280
Tru9I TTAA 2 cut(s) 69, 280
TspDTI ATGAA 1 cut(s) 21
Tth111I GACNNNGTC 1 cut(s) 50
Vha464I CTTAAG 1 cut(s) 68
XspI CTAG 3 cut(s) 174, 225, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.