Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Forward (+)

83405801 .. 83406602

Gene Structure 802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022447

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTGCCTATCAATTGGAACCAGCCCTTACATGGCGGAGATACATACTAAGTTCATCTTTGTATATTGCTTGAGTTCCTACAATGCCATTGGACGTCCAGCCCTCAACAAGCTAAAGTGCATCATCGCCAGGTACATGCTACTCATGATGTTCCCTACGACTAACGACATTGGCTGTGTGAGGGGAAGCCAACCAATTGCACGAGAATGCTACTCAACGATCGTGATGCACTTAAGGAGATGCCACGAGATTCTAAAGGTGAGAAATTCGCCAGCTCTAACAGACAGAATAGATGATCCGAGAGATGACAAAAAGAAATATGTCAAGAAGGAACCCGTCAATCCGAAAACATCCTTATGTGTCGTTAGTGTCATTGACAAGCATCCAGAGCGGACAGTGCGCATTAGCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

138

Amino Acids

15.68

Weight (kDa)

9.46

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	97
Acc16I	TGCGCA	1 cut(s)	401
AccBSI	CCGCTC	1 cut(s)	391
AciI	CCGC	2 cut(s)	35, 391
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	265
AcyI	GRCGYC	1 cut(s)	94
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	31
AflII	CTTAAG	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	2 cut(s)	112, 275
AluI	AGCT	2 cut(s)	112, 275
AlwI	GGATC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	402
AsuHPI	GGTGA	1 cut(s)	271
BauI	CACGAG	2 cut(s)	201, 245
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BciT130I	CCWGG	1 cut(s)	130
BfrI	CTTAAG	1 cut(s)	232
Bme1390I	CCNGG	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	19, 333
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	4 cut(s)	129, 216, 230, 391
BpuEI	CTTGAG	1 cut(s)	91
BsaHI	GRCGYC	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	130
BseGI	GGATG	2 cut(s)	350, 382
BseLI	CCNNNNNNNGG	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	222
BsiEI	CGRYCG	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	219, 295
BspACI	CCGC	2 cut(s)	35, 391
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	19, 333
BspPI	GGATC	1 cut(s)	290
BspTI	CTTAAG	1 cut(s)	232
BsrBI	CCGCTC	1 cut(s)	391
BssMI	GATC	2 cut(s)	219, 295
BssNI	GRCGYC	1 cut(s)	94
BssSI	CACGAG	2 cut(s)	201, 245
Bst2BI	CACGAG	2 cut(s)	201, 245
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	397
BstACI	GRCGYC	1 cut(s)	94
BstAFI	CTTAAG	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	1 cut(s)	48
BstF5I	GGATG	2 cut(s)	350, 382
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	2 cut(s)	222, 298
BstMBI	GATC	2 cut(s)	219, 295
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	2 cut(s)	388, 397
BstNI	CCWGG	1 cut(s)	130
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	128
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	2 cut(s)	350, 382
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	1 cut(s)	273
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	1 cut(s)	402
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	3 cut(s)	31, 136, 145
CviJI	RGCY	6 cut(s)	24, 101, 112, 174, 189, 275
CviKI_1	RGCY	6 cut(s)	24, 101, 112, 174, 189, 275
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	2 cut(s)	221, 297
DpnII	GATC	2 cut(s)	219, 295
EciI	GGCGGA	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	128
FaeI	CATG	3 cut(s)	34, 139, 148
FaiI	YATR	7 cut(s)	32, 45, 64, 137, 146, 321, 358
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FatI	CATG	3 cut(s)	30, 135, 144
FokI	GGATG	2 cut(s)	337, 369
FspAI	RTGCGCAY	1 cut(s)	401
FspI	TGCGCA	1 cut(s)	401
GlaI	GCGC	1 cut(s)	401
HhaI	GCGC	1 cut(s)	402
Hin1I	GRCGYC	1 cut(s)	94
Hin1II	CATG	3 cut(s)	34, 139, 148
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HinfI	GANTC	1 cut(s)	250
HphI	GGTGA	1 cut(s)	271
Hpy188I	TCNGA	2 cut(s)	300, 345
Hpy188III	TCNNGA	4 cut(s)	145, 223, 325, 386
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	3 cut(s)	120, 200, 229
HpyF10VI	GCNNNNNNNGC	2 cut(s)	388, 397
HpyF3I	CTNAG	1 cut(s)	48
HpySE526I	ACGT	1 cut(s)	94
Hsp92I	GRCGYC	1 cut(s)	94
Hsp92II	CATG	3 cut(s)	34, 139, 148
HspAI	GCGC	1 cut(s)	400
Kzo9I	GATC	2 cut(s)	219, 295
LpnPI	CCDG	6 cut(s)	34, 111, 115, 142, 285, 399
LweI	GCATC	4 cut(s)	129, 216, 230, 391
MaeII	ACGT	1 cut(s)	94
MalI	GATC	2 cut(s)	221, 297
MbiI	CCGCTC	1 cut(s)	391
MboI	GATC	2 cut(s)	219, 295
MfeI	CAATTG	2 cut(s)	12, 195
MluCI	AATT	3 cut(s)	12, 195, 265
MnlI	CCTC	2 cut(s)	113, 174
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	2 cut(s)	205, 355
MspCI	CTTAAG	1 cut(s)	232
MspR9I	CCNGG	1 cut(s)	130
MunI	CAATTG	2 cut(s)	12, 195
Mva1269I	GAATGC	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	388, 397
NdeII	GATC	2 cut(s)	219, 295
NlaIII	CATG	3 cut(s)	34, 139, 148
NlaIV	GGNNCC	2 cut(s)	19, 333
NsbI	TGCGCA	1 cut(s)	401
NspI	RCATGY	1 cut(s)	139
PagI	TCATGA	1 cut(s)	144
PctI	GAATGC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	250
Ple19I	CGATCG	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	2 cut(s)	19, 333
PvuI	CGATCG	1 cut(s)	222
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	2 cut(s)	205, 355
SaqAI	TTAA	1 cut(s)	233
Sau3AI	GATC	2 cut(s)	219, 295
ScrFI	CCNGG	1 cut(s)	130
SetI	ASST	6 cut(s)	97, 114, 134, 261, 277, 413
SfaNI	GCATC	4 cut(s)	129, 216, 230, 391
SmiMI	CAYNNNNRTG	2 cut(s)	205, 355
SmlI	CTYRAG	2 cut(s)	70, 232
SmoI	CTYRAG	2 cut(s)	70, 232
Sse9I	AATT	3 cut(s)	12, 195, 265
SsiI	CCGC	2 cut(s)	35, 391
StyD4I	CCNGG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	1 cut(s)	97
TasI	AATT	3 cut(s)	12, 195, 265
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	1 cut(s)	402
TspDTI	ATGAA	1 cut(s)	43
TspRI	CASTG	1 cut(s)	402
Vha464I	CTTAAG	1 cut(s)	232
XapI	RAATTY	1 cut(s)	265
XceI	RCATGY	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
ZraI	GACGTC	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.