Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000250

Physical Location & Seq

Genomic Coordinates Reverse (-)

15414750 .. 15417227

Gene Structure 2478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G009170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2154 bp

ATGCGGCTTAACCCACAGAAGTGCATCTTCGAGGTCGAGGCCGGAAAGTTTCTCGGGTACATCATCAGCCACAGGGGAATTGAGGCCAATCCAGAGAAAGTGCAGGCTATAATAGACATGGTATCCCCAACCTACCGGAACGAGGTCCAATCTCTTGTAGGCAAGGTGGCCGCCCTGTCAAGATTCATCTCCAGGCTGACAGACAAGTGTACCCCTTTCTTCAAACTGCTAAAAACCCAACACATCGAGGTGATAGCCTGGACAGCGGAGCACGAGGCTGCTTTCCTTGGCTTGAAGTCGTACCTGTCACAGGTACCTCTACTCTACAAACATGTTCCTGGAGAAATGCTTTACGTATATCTGGCAGCATCGGCAACTGCTGTGAGCTCAGTCCTGATTAGGAAGGACTCCGATTGCGAGTACCCAGTGTACTACGCTGGGAAAGGTTACACTGGTGCAGAGTCCAAGTACCCGGACATTGAAAGAGTAGCACTGGCCCTCCTGGTATCAGCCCGGAAGCTCAGACATTACTTCCAAGCACATTCTATCACCGTTTTCACTAATCACCCATTGAGGCAGGTTTTGCAGAAACCAGAGACATCGGGCAGGTTAATTAAGTGGGTCATCGAGCTTGGGGAATTCGATATCAAGTACCTACCCCGGACAGCCATCAAAGGCCAGGCAGCGGCCGATTTTATTTCCGAATCAATCCCTTCCCATGACCCAAACAAGGAACCACCTGAACCGCTAGCCTCGGATCCACCTCCGCCAAGCACTTGGCGATTATACGTGGACGGATCATCCAACAAGAAAACTAGCGGAGCCGGCATCCTACTCATTAGCCCGGACGAGCAAATCGCCCGGGAACTAGGGGTCCAACACCTCCATATCTTCAGTGATTCCCAGTTGGTCGTAAACCAGGTCAGCGGTAACTTCGAGGCAAAGGAGCCCCACATGTCCTCCTACCAGGCCTTGGCCCGGGCTTTAGTTCAGAGGTTCACCTCCTACATTTTTACCCAAATACCGAGGGCAGAAAACGACAAGGCAGACGCTCTTGCTAAGCTCGCATCAACTTCTCCAAACCCTACCTATGGGACCACTAAAGTCGAAATACTCGCGGGACCTAGCACTTCCAAAACGGTGTCAGAAATATTTTCGGTGGATCACAAACCTTCATGGATGGACCCAATTTTGAAATACATGGAAGGTCACAAAATAATGACGGACATTCACGCTGGTGTATGTGGTAACCATGCCGGAGCTCGATCTCTCGCACACAAGACCCTAAGGGCAGGATATTTCTGGCCAACCATGTCGGCCCTGTGGGGTTTGGACTTGATTGGTAAACTTCCCACGGCAGTGGGACAGTTCAAATACGCCATCGTTGCCGTGGACTACCAAACAAAGTGGGTAGAGGCAGAACCTCTCGTCGCCATCACCACGGAAAAAGTCAAGAACTTCCTATGGAAGAACATCTACTGCAGGTTTGGAGTCCCGGATACCATAGTCACGGACAATGGTACCCAGTTTGACAATGATGAGTTGAGGGCTTACACACAGAACCTCGGCACTAAGATCCTCTATGCTTCCCCGGCTCACCCCCAGACAAACGGTCAGGTCGAAGCTGTCAACAAGATAATCAAGAAAATACTGAAAAAGAAGCTTGACGAAGCCAAGGGTCTTTGGGCCGCTAAGCTCCCGGAAGTGTTGTGGGCTATCAGAACCACGGCAACGGAGGCCACGGGCGAGACCCCTTTCTGCATGGCTTTTGGATCAGAAGCAGTACTCCCTATTGAAACACAAATCCAGAGTCCCCGGATCGAATACTTCGATGCGGGTACCAACTCAGATGGCCTACACCTCGATGCTGATTTACTCGAGGAACGAAGAGAAGTGGCACATATGCATAACTTGGCAAACAAGCGGAGGATAGCTCGTTACTACGATGCCAAGGTACAGTCCCGGACATTAAAATTGGGGGACTGGGTCATGAAGCAAGTCTACCCAGAACCCCGGGGACTGGATCCATCCTGGACAGGGCCTTACGAGATCATTGAAGAAGTAGGTCCCGCAACCTTTTTCATCCGGGATATGAACGGGGTCGTTTCCAGGCATCCATGGAATACCCAGCGCCTGCGGTACTATTACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 rve

Protein Analysis

717

Amino Acids

80.43

Weight (kDa)

8.63

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	87 - 185	1.4e-17	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	116 - 214	1.5e-17	RNase H-like domain found in reverse transcriptase
RVT_3	PF13456	285 - 356	3.9e-11	Reverse transcriptase-like
rve	PF00665	441 - 534	2.7e-11	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22373 FvH4_1g22374 FvH4_1g25831 FvH4_1g28031 FvH4_2g11354 FvH4_3g11301 FvH4_3g11302 FvH4_3g14364 FvH4_3g20862 FvH4_4g15482 FvH4_4g15483 FvH4_4g15484 FvH4_5g25502 FvH4_5g37242 FvH4_6g18432 FvH4_6g18433 FvH4_6g20952 FvH4_7g02201 FvH4_7g10991
prunus_persica	Prupe.6G166700_v2.0.a1
pyrus_communis	pycom01g03860 pycom02g16130 pycom05g08340 pycom07g08280 pycom16g20980 pycom16g25810
rosa_chinensis	RchiOBHm_Chr5g0018261
rosa_laevigata	RLG00000022447
rosa_multiflora	Rmu_co7963284.1_g000001 Rmu_co7968088.1_g000001 Rmu_co8036800.1_g000001 Rmu_co8110294.1_g000001 Rmu_co8291955.1_g000001 Rmu_co8396209.1_g000002 Rmu_co8413879.1_g000001 Rmu_co8464165.1_g000001 Rmu_co8469565.1_g000001 Rmu_co8485695.1_g000003 Rmu_co8486821.1_g000003 Rmu_co8515379.1_g000001 Rmu_sc0000239.1_g000074 Rmu_sc0000327.1_g000028 Rmu_sc0000509.1_g000002 Rmu_sc0000677.1_g000042 Rmu_sc0000756.1_g000032 Rmu_sc0000782.1_g000013 Rmu_sc0001144.1_g000044 Rmu_sc0001861.1_g000003 Rmu_sc0002371.1_g000016 Rmu_sc0002451.1_g000061 Rmu_sc0002764.1_g000053 Rmu_sc0002868.1_g000041 Rmu_sc0003735.1_g000026 Rmu_sc0004654.1_g000006 Rmu_sc0005038.1_g000020 Rmu_sc0005236.1_g000001 Rmu_sc0006725.1_g000004 Rmu_sc0010685.1_g000001 Rmu_sc0011973.1_g000010 Rmu_sc0012722.1_g000001 Rmu_sc0015925.1_g000002 Rmu_sc0017188.1_g000001 Rmu_sc0021806.1_g000001 Rmu_sc0033125.1_g000001 Rmu_sc0038204.1_g000001 Rmu_ssc0000215.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001020 Rroxscaffold_1G00027520 Rroxscaffold_3G00228140 Rroxscaffold_4G00320850 Rroxscaffold_4G00321830 Rroxscaffold_4G00321840 Rroxscaffold_4G00332450 Rroxscaffold_5G00344360 Rroxscaffold_5G00365190 Rroxscaffold_5G00377320 Rroxscaffold_5G00377330 Rroxscaffold_7G00183080 Rroxscaffold_7G00184560 Rroxscaffold_7G00216010
rosa_rugosa	Rorug02G0381000
rosa_samantha	Rh1AG155000 Rh1AG167000 Rh2AG095000 Rh3BG335500 Rh4AG082900 Rh4CG090200 Rh5CG445500 Rh7DG403200
rosa_wichuraiana	Rw0G001000 Rw0G014090 Rw0G019800 Rw0G020130 Rw0G020350 Rw1G002560 Rw1G013310 Rw1G014300 Rw1G014670 Rw1G016610 Rw1G021110 Rw1G024950 Rw1G028180 Rw2G020910 Rw2G024170 Rw2G024770 Rw2G029990 Rw2G031960 Rw2G034100 Rw3G013950 Rw3G028980 Rw3G029200 Rw4G004150 Rw4G008130 Rw4G012200 Rw4G018750 Rw4G019330 Rw4G021010 Rw4G022120 Rw4G030810 Rw5G015840 Rw5G015850 Rw5G022430 Rw5G022480 Rw5G026870 Rw5G033550 Rw6G009170 Rw6G010190 Rw6G011570 Rw6G018280 Rw6G023730 Rw7G025660 Rw7G029890 Rw7G031130 Rw7G042550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	568, 597, 1473
Acc65I	GGTACC	3 cut(s)	313, 1520, 1838
AccB1I	GGYRCC	3 cut(s)	313, 1520, 1838
AccB7I	CCANNNNNTGG	1 cut(s)	973
AccI	GTMKAC	1 cut(s)	2001
AccII	CGCG	1 cut(s)	1118
AclWI	GGATC	9 cut(s)	752, 765, 805, 1170, 1570, 1780, 1826, 2018, 2031
AcoI	YGGCCR	3 cut(s)	168, 687, 1304
AcsI	RAATTY	1 cut(s)	638
AcuI	CTGAAG	1 cut(s)	877
AfiI	CCNNNNNNNGG	9 cut(s)	142, 310, 685, 730, 973, 978, 1091, 2020, 2037
AflIII	ACRYGT	2 cut(s)	331, 954
AgsI	TTSAA	7 cut(s)	223, 295, 482, 1195, 1372, 1796, 2057
AhdI	GACNNNNNGTC	1 cut(s)	1611
AjnI	CCWGG	9 cut(s)	191, 257, 337, 501, 678, 918, 966, 2030, 2108
AleI	CACNNNNGTG	3 cut(s)	19, 1236, 1358
AloI	GAACNNNNNNTCC	2 cut(s)	858, 890
AluBI	AGCT	9 cut(s)	387, 520, 631, 1063, 1262, 1625, 1663, 1696, 1934
AluI	AGCT	9 cut(s)	387, 520, 631, 1063, 1262, 1625, 1663, 1696, 1934
Alw21I	GWGCWC	3 cut(s)	273, 389, 1264
Alw26I	GTCTC	2 cut(s)	590, 1742
AlwI	GGATC	9 cut(s)	752, 765, 805, 1170, 1570, 1780, 1826, 2018, 2031
AlwNI	CAGNNNCTG	1 cut(s)	2134
Ama87I	CYCGRG	5 cut(s)	53, 861, 978, 1877, 2013
ApeKI	GCWGC	3 cut(s)	278, 365, 683
ApoI	RAATTY	1 cut(s)	638
ArsI	GACNNNNNNTTYG	2 cut(s)	1795, 1827
Asp718I	GGTACC	3 cut(s)	313, 1520, 1838
AspLEI	GCGC	1 cut(s)	2133
AsuHPI	GGTGA	6 cut(s)	262, 541, 557, 991, 1429, 1589
AsuNHI	GCTAGC	1 cut(s)	748
AvaI	CYCGRG	5 cut(s)	53, 861, 978, 1877, 2013
AvaII	GGWCC	6 cut(s)	145, 874, 1095, 1121, 1183, 2066
AxyI	CCTNAGG	1 cut(s)	1286
BaeI	ACNNNNGTAYC	6 cut(s)	193, 226, 1491, 1504, 1524, 1537
BalI	TGGCCA	1 cut(s)	1306
BamHI	GGATCC	2 cut(s)	757, 2023
BanI	GGYRCC	3 cut(s)	313, 1520, 1838
BanII	GRGCYC	3 cut(s)	389, 951, 1264
BarI	GAAGNNNNNNTAC	4 cut(s)	1460, 1492, 1985, 2017
BauI	CACGAG	1 cut(s)	272
Bbv12I	GWGCWC	3 cut(s)	273, 389, 1264
BbvI	GCAGC	3 cut(s)	265, 377, 695
BccI	CCATC	6 cut(s)	677, 1174, 1388, 1442, 1844, 2035
BceAI	ACGGC	3 cut(s)	1371, 1373, 1743
BciT130I	CCWGG	9 cut(s)	193, 259, 339, 503, 680, 920, 968, 2032, 2110
BciVI	GTATCC	2 cut(s)	133, 1492
BcoDI	GTCTC	2 cut(s)	590, 1742
BfaI	CTAG	4 cut(s)	749, 816, 869, 1125
BfmI	CTRYAG	1 cut(s)	1480
BfoI	RGCGCY	1 cut(s)	2134
BfuAI	ACCTGC	3 cut(s)	568, 597, 1473
BfuI	GTATCC	2 cut(s)	133, 1492
BisI	GCNGC	7 cut(s)	5, 171, 279, 366, 684, 687, 1689
BlpI	GCTNAGC	2 cut(s)	1059, 1692
BlsI	GCNGC	7 cut(s)	6, 172, 280, 367, 685, 688, 1690
BmcAI	AGTACT	1 cut(s)	1785
Bme18I	GGWCC	6 cut(s)	145, 874, 1095, 1121, 1183, 2066
BmeRI	GACNNNNNGTC	1 cut(s)	1611
BmeT110I	CYCGRG	5 cut(s)	53, 861, 978, 1877, 2013
BmrI	ACTGGG	4 cut(s)	419, 898, 1519, 1993
BmsI	GCATC	8 cut(s)	33, 377, 837, 1076, 1822, 1855, 1936, 2122
BmtI	GCTAGC	1 cut(s)	752
BmuI	ACTGGG	4 cut(s)	419, 898, 1519, 1993
BplI	GAGNNNNNCTC	2 cut(s)	1918, 1950
BpmI	CTGGAG	2 cut(s)	175, 360
Bpu1102I	GCTNAGC	2 cut(s)	1059, 1692
BsaAI	YACGTR	2 cut(s)	355, 790
BsaI	GGTCTC	1 cut(s)	1742
BsaWI	WCCGGW	1 cut(s)	135
BsaXI	ACNNNNNCTCC	4 cut(s)	483, 513, 944, 974
Bsc4I	CCNNNNNNNGG	9 cut(s)	142, 310, 685, 730, 973, 978, 1091, 2020, 2037
Bse118I	RCCGGY	1 cut(s)	824
Bse1I	ACTGG	7 cut(s)	425, 457, 498, 904, 1525, 1988, 2025
Bse21I	CCTNAGG	1 cut(s)	1286
BseBI	CCWGG	9 cut(s)	193, 259, 339, 503, 680, 920, 968, 2032, 2110
BseGI	GGATG	6 cut(s)	800, 828, 1185, 2027, 2082, 2113
BseLI	CCNNNNNNNGG	9 cut(s)	142, 310, 685, 730, 973, 978, 1091, 2020, 2037
BseMII	CTCAG	3 cut(s)	402, 535, 1860
BseNI	ACTGG	7 cut(s)	425, 457, 498, 904, 1525, 1988, 2025
BseX3I	CGGCCG	1 cut(s)	687
BseXI	GCAGC	3 cut(s)	265, 377, 695
BseYI	CCCAGC	2 cut(s)	437, 2127
BsgI	GTGCAG	2 cut(s)	122, 477
Bsh1236I	CGCG	1 cut(s)	1118
Bsh1285I	CGRYCG	1 cut(s)	690
BshNI	GGYRCC	3 cut(s)	313, 1520, 1838
BsiEI	CGRYCG	1 cut(s)	690
BsiHKAI	GWGCWC	3 cut(s)	273, 389, 1264
BsiHKCI	CYCGRG	5 cut(s)	53, 861, 978, 1877, 2013
BslFI	GGGAC	9 cut(s)	1108, 1134, 1377, 1478, 1797, 1945, 1994, 2031, 2052
BslI	CCNNNNNNNGG	9 cut(s)	142, 310, 685, 730, 973, 978, 1091, 2020, 2037
BsmAI	GTCTC	2 cut(s)	590, 1742
BsmFI	GGGAC	9 cut(s)	1108, 1134, 1377, 1478, 1797, 1945, 1994, 2031, 2052
Bso31I	GGTCTC	1 cut(s)	1742
BsoBI	CYCGRG	5 cut(s)	53, 861, 978, 1877, 2013
Bsp1286I	GDGCHC	4 cut(s)	273, 389, 951, 1264
Bsp143I	GATC	9 cut(s)	757, 797, 1162, 1265, 1575, 1772, 1818, 2023, 2049
Bsp1720I	GCTNAGC	2 cut(s)	1059, 1692
Bsp19I	CCATGG	1 cut(s)	2117
BspCNI	CTCAG	3 cut(s)	401, 534, 1859
BspFNI	CGCG	1 cut(s)	1118
BspHI	TCATGA	1 cut(s)	1989
BspMAI	CTGCAG	1 cut(s)	1484
BspMI	ACCTGC	3 cut(s)	568, 597, 1473
BspOI	GCTAGC	1 cut(s)	752
BspPI	GGATC	9 cut(s)	752, 765, 805, 1170, 1570, 1780, 1826, 2018, 2031
BspT107I	GGYRCC	3 cut(s)	313, 1520, 1838
BspTNI	GGTCTC	1 cut(s)	1742
BsrFI	RCCGGY	1 cut(s)	824
BsrI	ACTGG	7 cut(s)	425, 457, 498, 904, 1525, 1988, 2025
BssAI	RCCGGY	1 cut(s)	824
BssMI	GATC	9 cut(s)	757, 797, 1162, 1265, 1575, 1772, 1818, 2023, 2049
BssSI	CACGAG	1 cut(s)	272
BssT1I	CCWWGG	5 cut(s)	286, 972, 1674, 1950, 2117
Bst2BI	CACGAG	1 cut(s)	272
Bst2UI	CCWGG	9 cut(s)	193, 259, 339, 503, 680, 920, 968, 2032, 2110
Bst4CI	ACNGT	5 cut(s)	553, 1141, 1368, 1613, 1959
Bst6I	CTCTTC	1 cut(s)	1882
BstAPI	GCANNNNNTGC	1 cut(s)	583
BstBAI	YACGTR	2 cut(s)	355, 790
BstC8I	GCNNGC	5 cut(s)	105, 750, 826, 1065, 2135
BstDEI	CTNAG	7 cut(s)	388, 521, 1059, 1286, 1572, 1692, 1846
BstDSI	CCRYGG	6 cut(s)	1353, 1389, 1440, 1725, 1740, 2117
BstEII	GGTNACC	1 cut(s)	1247
BstENI	CCTNNNNNAGG	1 cut(s)	308
BstF5I	GGATG	6 cut(s)	800, 828, 1185, 2027, 2082, 2113
BstFNI	CGCG	1 cut(s)	1118
BstH2I	RGCGCY	1 cut(s)	2134
BstHHI	GCGC	1 cut(s)	2133
BstKTI	GATC	9 cut(s)	760, 800, 1165, 1268, 1578, 1775, 1821, 2026, 2052
BstMAI	GTCTC	2 cut(s)	590, 1742
BstMBI	GATC	9 cut(s)	757, 797, 1162, 1265, 1575, 1772, 1818, 2023, 2049
BstMCI	CGRYCG	1 cut(s)	690
BstMWI	GCNNNNNNNGC	8 cut(s)	263, 371, 583, 825, 1064, 1385, 1592, 1736
BstNI	CCWGG	9 cut(s)	193, 259, 339, 503, 680, 920, 968, 2032, 2110
BstNSI	RCATGY	2 cut(s)	335, 958
BstPI	GGTNACC	1 cut(s)	1247
BstSFI	CTRYAG	1 cut(s)	1480
BstSNI	TACGTA	1 cut(s)	355
BstUI	CGCG	1 cut(s)	1118
BstV1I	GCAGC	3 cut(s)	265, 377, 695
BstX2I	RGATCY	3 cut(s)	757, 1575, 2023
BstXI	CCANNNNNNTGG	2 cut(s)	777, 1360
BstYI	RGATCY	3 cut(s)	757, 1575, 2023
BstZI	CGGCCG	1 cut(s)	687
Bsu36I	CCTNAGG	1 cut(s)	1286
BsuI	GTATCC	2 cut(s)	133, 1492
BtgI	CCRYGG	6 cut(s)	1353, 1389, 1440, 1725, 1740, 2117
BtsCI	GGATG	6 cut(s)	800, 828, 1185, 2027, 2082, 2113
BtsI	GCAGTG	1 cut(s)	1365
BtsIMutI	CAGTG	5 cut(s)	432, 450, 491, 901, 1365
BveI	ACCTGC	3 cut(s)	568, 597, 1473
Cac8I	GCNNGC	5 cut(s)	105, 750, 826, 1065, 2135
CaiI	CAGNNNCTG	1 cut(s)	2134
CciI	TCATGA	1 cut(s)	1989
CfoI	GCGC	1 cut(s)	2133
Cfr10I	RCCGGY	1 cut(s)	824
Cfr9I	CCCGGG	3 cut(s)	861, 978, 2013
CseI	GACGC	1 cut(s)	1058
CsiI	ACCWGGT	1 cut(s)	918
CspCI	CAANNNNNGTGG	2 cut(s)	1388, 1423
DdeI	CTNAG	7 cut(s)	388, 521, 1059, 1286, 1572, 1692, 1846
DpnI	GATC	9 cut(s)	759, 799, 1164, 1267, 1577, 1774, 1820, 2025, 2051
DpnII	GATC	9 cut(s)	757, 797, 1162, 1265, 1575, 1772, 1818, 2023, 2049
DriI	GACNNNNNGTC	1 cut(s)	1611
EaeI	YGGCCR	3 cut(s)	168, 687, 1304
EagI	CGGCCG	1 cut(s)	687
Eam1104I	CTCTTC	1 cut(s)	1882
Eam1105I	GACNNNNNGTC	1 cut(s)	1611
EarI	CTCTTC	1 cut(s)	1882
EciI	GGCGGA	1 cut(s)	756
Ecl136II	GAGCTC	2 cut(s)	387, 1262
EclXI	CGGCCG	1 cut(s)	687
Eco105I	TACGTA	1 cut(s)	355
Eco130I	CCWWGG	5 cut(s)	286, 972, 1674, 1950, 2117
Eco147I	AGGCCT	1 cut(s)	971
Eco24I	GRGCYC	3 cut(s)	389, 951, 1264
Eco31I	GGTCTC	1 cut(s)	1742
Eco32I	GATATC	1 cut(s)	646
Eco47I	GGWCC	6 cut(s)	145, 874, 1095, 1121, 1183, 2066
Eco52I	CGGCCG	1 cut(s)	687
Eco53kI	GAGCTC	2 cut(s)	387, 1262
Eco57I	CTGAAG	1 cut(s)	877
Eco81I	CCTNAGG	1 cut(s)	1286
Eco88I	CYCGRG	5 cut(s)	53, 861, 978, 1877, 2013
Eco91I	GGTNACC	1 cut(s)	1247
EcoICRI	GAGCTC	2 cut(s)	387, 1262
EcoNI	CCTNNNNNAGG	1 cut(s)	308
EcoO109I	RGGNCCY	3 cut(s)	1121, 2039, 2066
EcoO65I	GGTNACC	1 cut(s)	1247
EcoRI	GAATTC	1 cut(s)	638
EcoRII	CCWGG	9 cut(s)	191, 257, 337, 501, 678, 918, 966, 2030, 2108
EcoRV	GATATC	1 cut(s)	646
EcoT14I	CCWWGG	5 cut(s)	286, 972, 1674, 1950, 2117
EcoT22I	ATGCAT	1 cut(s)	1908
EcoT38I	GRGCYC	3 cut(s)	389, 951, 1264
ErhI	CCWWGG	5 cut(s)	286, 972, 1674, 1950, 2117
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	9 cut(s)	1108, 1134, 1377, 1478, 1797, 1945, 1994, 2031, 2052
FauI	CCCGC	3 cut(s)	1111, 1828, 2077
FauNDI	CATATG	1 cut(s)	1902
FblI	GTMKAC	1 cut(s)	2001
Fnu4HI	GCNGC	7 cut(s)	5, 171, 279, 366, 684, 687, 1689
FokI	GGATG	6 cut(s)	787, 815, 1192, 2014, 2069, 2100
FriOI	GRGCYC	3 cut(s)	389, 951, 1264
Fsp4HI	GCNGC	7 cut(s)	5, 171, 279, 366, 684, 687, 1689
FspBI	CTAG	4 cut(s)	749, 816, 869, 1125
GlaI	GCGC	1 cut(s)	2132
GluI	GCNGC	7 cut(s)	5, 171, 279, 366, 684, 687, 1689
GsaI	CCCAGC	2 cut(s)	441, 2131
GsuI	CTGGAG	2 cut(s)	175, 360
HaeII	RGCGCY	1 cut(s)	2134
HgaI	GACGC	1 cut(s)	1058
HhaI	GCGC	1 cut(s)	2133
Hin6I	GCGC	1 cut(s)	2131
HinP1I	GCGC	1 cut(s)	2131
HincII	GTYRAC	1 cut(s)	1630
HindII	GTYRAC	1 cut(s)	1630
HindIII	AAGCTT	1 cut(s)	1661
HinfI	GANTC	7 cut(s)	183, 407, 461, 704, 899, 1491, 1810
HphI	GGTGA	6 cut(s)	262, 541, 557, 991, 1429, 1589
Hpy166II	GTNNAC	9 cut(s)	210, 430, 793, 916, 999, 1346, 1393, 1630, 2002
Hpy188I	TCNGA	9 cut(s)	412, 524, 703, 757, 993, 1147, 1721, 1777, 1849
Hpy188III	TCNNGA	7 cut(s)	92, 180, 394, 1453, 1642, 1807, 1990
Hpy8I	GTNNAC	9 cut(s)	210, 430, 793, 916, 999, 1346, 1393, 1630, 2002
Hpy99I	CGWCG	1 cut(s)	1433
HpyAV	CCTTC	4 cut(s)	397, 723, 1182, 1199
HpyCH4III	ACNGT	5 cut(s)	553, 1141, 1368, 1613, 1959
HpyCH4IV	ACGT	2 cut(s)	354, 789
HpyCH4V	TGCA	7 cut(s)	24, 103, 458, 586, 1482, 1761, 1906
HpyF10VI	GCNNNNNNNGC	8 cut(s)	263, 371, 583, 825, 1064, 1385, 1592, 1736
HpyF3I	CTNAG	7 cut(s)	388, 521, 1059, 1286, 1572, 1692, 1846
HpySE526I	ACGT	2 cut(s)	354, 789
HspAI	GCGC	1 cut(s)	2131
KpnI	GGTACC	3 cut(s)	317, 1524, 1842
KroI	GCCGGC	1 cut(s)	824
KroNI	GCCGGC	1 cut(s)	826
Kzo9I	GATC	9 cut(s)	757, 797, 1162, 1265, 1575, 1772, 1818, 2023, 2049
LmnI	GCTCC	5 cut(s)	268, 821, 946, 1259, 1701
Lsp1109I	GCAGC	3 cut(s)	265, 377, 695
LweI	GCATC	8 cut(s)	33, 377, 837, 1076, 1822, 1855, 1936, 2122
MabI	ACCWGGT	1 cut(s)	918
MaeI	CTAG	4 cut(s)	749, 816, 869, 1125
MaeII	ACGT	2 cut(s)	354, 789
MaeIII	GTNAC	7 cut(s)	306, 446, 929, 1208, 1247, 1507, 1937
MalI	GATC	9 cut(s)	759, 799, 1164, 1267, 1577, 1774, 1820, 2025, 2051
MboI	GATC	9 cut(s)	757, 797, 1162, 1265, 1575, 1772, 1818, 2023, 2049
MboII	GAAGA	6 cut(s)	19, 211, 883, 1480, 1899, 2069
MflI	RGATCY	3 cut(s)	757, 1575, 2023
MhlI	GDGCHC	4 cut(s)	273, 389, 951, 1264
MlsI	TGGCCA	1 cut(s)	1306
MluCI	AATT	5 cut(s)	78, 612, 638, 1188, 1973
MluNI	TGGCCA	1 cut(s)	1306
MlyI	GAGTC	4 cut(s)	401, 470, 1500, 1819
MmeI	TCCRAC	2 cut(s)	828, 901
Mox20I	TGGCCA	1 cut(s)	1306
Mph1103I	ATGCAT	1 cut(s)	1908
MroNI	GCCGGC	1 cut(s)	824
MscI	TGGCCA	1 cut(s)	1306
MseI	TTAA	4 cut(s)	9, 611, 615, 1970
MslI	CAYNNNNRTG	5 cut(s)	19, 248, 1236, 1358, 1863
Msp20I	TGGCCA	1 cut(s)	1306
MspA1I	CMGCKG	3 cut(s)	266, 686, 927
MvaI	CCWGG	9 cut(s)	193, 259, 339, 503, 680, 920, 968, 2032, 2110
MvnI	CGCG	1 cut(s)	1118
MwoI	GCNNNNNNNGC	8 cut(s)	263, 371, 583, 825, 1064, 1385, 1592, 1736
NaeI	GCCGGC	1 cut(s)	826
NcoI	CCATGG	1 cut(s)	2117
NdeI	CATATG	1 cut(s)	1902
NdeII	GATC	9 cut(s)	757, 797, 1162, 1265, 1575, 1772, 1818, 2023, 2049
NgoMIV	GCCGGC	1 cut(s)	824
NheI	GCTAGC	1 cut(s)	748
NmeAIII	GCCGAG	1 cut(s)	1545
NmuCI	GTSAC	3 cut(s)	306, 1208, 1507
NsiI	ATGCAT	1 cut(s)	1908
NspI	RCATGY	2 cut(s)	335, 958
OliI	CACNNNNGTG	3 cut(s)	19, 1236, 1358
PacI	TTAATTAA	1 cut(s)	615
PaeR7I	CTCGAG	1 cut(s)	1877
PagI	TCATGA	1 cut(s)	1989
PceI	AGGCCT	1 cut(s)	971
PciI	ACATGT	2 cut(s)	331, 954
PcsI	WCGNNNNNNNCGW	2 cut(s)	1617, 1827
PdiI	GCCGGC	1 cut(s)	826
PfeI	GAWTC	3 cut(s)	183, 704, 899
PflFI	GACNNNGTC	1 cut(s)	1985
PflMI	CCANNNNNTGG	1 cut(s)	973
PfoI	TCCNGGA	6 cut(s)	337, 1494, 1698, 1961, 2030, 2085
PkrI	GCNGC	7 cut(s)	6, 172, 280, 367, 685, 688, 1690
PleI	GAGTC	4 cut(s)	401, 469, 1499, 1818
PpsI	GAGTC	4 cut(s)	401, 469, 1499, 1818
Ppu21I	YACGTR	2 cut(s)	355, 790
PpuMI	RGGWCCY	2 cut(s)	1121, 2066
PscI	ACATGT	2 cut(s)	331, 954
Psp124BI	GAGCTC	2 cut(s)	389, 1264
Psp5II	RGGWCCY	2 cut(s)	1121, 2066
Psp6I	CCWGG	9 cut(s)	191, 257, 337, 501, 678, 918, 966, 2030, 2108
PspEI	GGTNACC	1 cut(s)	1247
PspFI	CCCAGC	2 cut(s)	437, 2127
PspGI	CCWGG	9 cut(s)	191, 257, 337, 501, 678, 918, 966, 2030, 2108
PspPPI	RGGWCCY	2 cut(s)	1121, 2066
PspXI	VCTCGAGB	1 cut(s)	1877
PstI	CTGCAG	1 cut(s)	1484
PstNI	CAGNNNCTG	1 cut(s)	2134
PsuI	RGATCY	3 cut(s)	757, 1575, 2023
PsyI	GACNNNGTC	1 cut(s)	1985
RseI	CAYNNNNRTG	5 cut(s)	19, 248, 1236, 1358, 1863
SacI	GAGCTC	2 cut(s)	389, 1264
SaqAI	TTAA	4 cut(s)	9, 611, 615, 1970
SatI	GCNGC	7 cut(s)	5, 171, 279, 366, 684, 687, 1689
Sau3AI	GATC	9 cut(s)	757, 797, 1162, 1265, 1575, 1772, 1818, 2023, 2049
ScaI	AGTACT	1 cut(s)	1785
SchI	GAGTC	4 cut(s)	401, 470, 1500, 1819
SduI	GDGCHC	4 cut(s)	273, 389, 951, 1264
SexAI	ACCWGGT	1 cut(s)	918
SfaNI	GCATC	8 cut(s)	33, 377, 837, 1076, 1822, 1855, 1936, 2122
SfcI	CTRYAG	1 cut(s)	1480
Sfr274I	CTCGAG	1 cut(s)	1877
SinI	GGWCC	6 cut(s)	145, 874, 1095, 1121, 1183, 2066
SlaI	CTCGAG	1 cut(s)	1877
SmaI	CCCGGG	3 cut(s)	863, 980, 2015
SmiMI	CAYNNNNRTG	5 cut(s)	19, 248, 1236, 1358, 1863
SmlI	CTYRAG	1 cut(s)	1877
SmoI	CTYRAG	1 cut(s)	1877
SnaBI	TACGTA	1 cut(s)	355
SrfI	GCCCGGGC	1 cut(s)	980
Sse9I	AATT	5 cut(s)	78, 612, 638, 1188, 1973
SseBI	AGGCCT	1 cut(s)	971
SspI	AATATT	1 cut(s)	1152
SspMI	CTAG	4 cut(s)	749, 816, 869, 1125
SstI	GAGCTC	2 cut(s)	389, 1264
StuI	AGGCCT	1 cut(s)	971
StyI	CCWWGG	5 cut(s)	286, 972, 1674, 1950, 2117
TaaI	ACNGT	5 cut(s)	553, 1141, 1368, 1613, 1959
TaiI	ACGT	2 cut(s)	357, 792
TasI	AATT	5 cut(s)	78, 612, 638, 1188, 1973
TatI	WGTACW	2 cut(s)	429, 1783
TauI	GCSGC	4 cut(s)	7, 173, 689, 1691
TfiI	GAWTC	3 cut(s)	183, 704, 899
Tru1I	TTAA	4 cut(s)	9, 611, 615, 1970
Tru9I	TTAA	4 cut(s)	9, 611, 615, 1970
TscAI	CASTG	5 cut(s)	432, 457, 498, 901, 1365
TseFI	GTSAC	3 cut(s)	306, 1208, 1507
TseI	GCWGC	3 cut(s)	278, 365, 683
Tsp45I	GTSAC	3 cut(s)	306, 1208, 1507
TspDTI	ATGAA	5 cut(s)	175, 1164, 2006, 2071, 2108
TspGWI	ACGGA	5 cut(s)	810, 1238, 1457, 1526, 1748
TspMI	CCCGGG	3 cut(s)	861, 978, 2013
TspRI	CASTG	5 cut(s)	432, 457, 498, 901, 1365
Tth111I	GACNNNGTC	1 cut(s)	1985
Van91I	CCANNNNNTGG	1 cut(s)	973
VpaK11BI	GGWCC	6 cut(s)	145, 874, 1095, 1121, 1183, 2066
XagI	CCTNNNNNAGG	1 cut(s)	308
XapI	RAATTY	1 cut(s)	638
XceI	RCATGY	2 cut(s)	335, 958
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1387
XhoI	CTCGAG	1 cut(s)	1877
XmaI	CCCGGG	3 cut(s)	861, 978, 2013
XmiI	GTMKAC	1 cut(s)	2001
XspI	CTAG	4 cut(s)	749, 816, 869, 1125
ZrmI	AGTACT	1 cut(s)	1785
Zsp2I	ATGCAT	1 cut(s)	1908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.